RNA–Protein interactions for RNA: ENST00000344937.11

CLCN2-202, Transcript of chloride voltage-gated channel 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLCN2, Length 3,187 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN2-202ENST00000344937 NISCHQ9Y2I1 1504 aa32.98■■■□□ 2.87
CLCN2-202ENST00000344937 CCDC180Q9P1Z9 1646 aa28.38■■■□□ 2.13
CLCN2-202ENST00000344937 ZCCHC6Q5VYS8 1495 aaKnown RBP27.72■■■□□ 2.03
CLCN2-202ENST00000344937 DCAF8L2P0C7V8 631 aa27.68■■■□□ 2.02
CLCN2-202ENST00000344937 SHROOM4Q9ULL8 1493 aa27.61■■■□□ 2.01
CLCN2-202ENST00000344937 ABCC9O60706 1549 aa27.06■■□□□ 1.92
CLCN2-202ENST00000344937 DCAF1Q9Y4B6 1507 aa27.02■■□□□ 1.92
CLCN2-202ENST00000344937 SUPT5HO00267 1087 aaKnown RBP26.96■■□□□ 1.91
CLCN2-202ENST00000344937 MYO15BQ96JP2 1530 aa26.53■■□□□ 1.84
CLCN2-202ENST00000344937 SCRIBQ14160 1630 aa26.52■■□□□ 1.84
CLCN2-202ENST00000344937 NACADO15069 1562 aa26.44■■□□□ 1.82
CLCN2-202ENST00000344937 RB1CC1Q8TDY2 1594 aa26.21■■□□□ 1.79
CLCN2-202ENST00000344937 PCGF6Q9BYE7 350 aa26■■□□□ 1.75
CLCN2-202ENST00000344937 CHIC1Q5VXU3 224 aa25.95■■□□□ 1.74
CLCN2-202ENST00000344937 HRCP23327 699 aa25.87■■□□□ 1.73
CLCN2-202ENST00000344937 CECR2Q9BXF3 1484 aa25.81■■□□□ 1.72
CLCN2-202ENST00000344937 UNC13AQ9UPW8 1703 aa25.8■■□□□ 1.72
CLCN2-202ENST00000344937 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
CLCN2-202ENST00000344937 PPARGC1BQ86YN6 1023 aaKnown RBP25.79■■□□□ 1.72
CLCN2-202ENST00000344937 PABPN1Q86U42 306 aaKnown RBP eCLIP25.74■■□□□ 1.71
CLCN2-202ENST00000344937 MROH2BQ7Z745 1585 aa25.62■■□□□ 1.69
CLCN2-202ENST00000344937 LOC105371045A0A1W2PR82 267 aa25.6■■□□□ 1.69
CLCN2-202ENST00000344937 PELP1Q8IZL8 1130 aaKnown RBP25.53■■□□□ 1.68
CLCN2-202ENST00000344937 BICRAQ9NZM4 1560 aa25.52■■□□□ 1.68
CLCN2-202ENST00000344937 WIZO95785 1651 aa25.44■■□□□ 1.66
CLCN2-202ENST00000344937 BAZ1AQ9NRL2 1556 aaPredicted RBP25.38■■□□□ 1.65
CLCN2-202ENST00000344937 SMARCA4P51532 1647 aa25.28■■□□□ 1.64
CLCN2-202ENST00000344937 EHMT2Q96KQ7 1210 aa25.24■■□□□ 1.63
CLCN2-202ENST00000344937 FAM9AQ8IZU1 332 aaPredicted RBP25.07■■□□□ 1.6
CLCN2-202ENST00000344937 TOP2AP11388 1531 aaKnown RBP25■■□□□ 1.59
CLCN2-202ENST00000344937 TRIM26Q12899 539 aaPredicted RBP24.96■■□□□ 1.59
CLCN2-202ENST00000344937 CCDC88BA6NC98 1476 aa24.9■■□□□ 1.58
CLCN2-202ENST00000344937 TRIM41Q8WV44 630 aa24.9■■□□□ 1.58
CLCN2-202ENST00000344937 SMARCA2P51531 1590 aa24.85■■□□□ 1.57
CLCN2-202ENST00000344937 ATAD2BQ9ULI0 1458 aa24.84■■□□□ 1.57
CLCN2-202ENST00000344937 PEG3Q9GZU2 1588 aa24.8■■□□□ 1.56
CLCN2-202ENST00000344937 SCAF1Q9H7N4 1312 aaKnown RBP24.76■■□□□ 1.55
CLCN2-202ENST00000344937 EIF4G1Q04637 1599 aaKnown RBP24.73■■□□□ 1.55
CLCN2-202ENST00000344937 BAZ1BQ9UIG0 1483 aaKnown RBP24.73■■□□□ 1.55
CLCN2-202ENST00000344937 MYT1Q01538 1121 aa24.63■■□□□ 1.53
CLCN2-202ENST00000344937 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
CLCN2-202ENST00000344937 NCAPD3P42695 1498 aa24.49■■□□□ 1.51
CLCN2-202ENST00000344937 TTBK1Q5TCY1 1321 aaPredicted RBP24.45■■□□□ 1.51
CLCN2-202ENST00000344937 ZEB1P37275 1124 aaPredicted RBP24.41■■□□□ 1.5
CLCN2-202ENST00000344937 HMGXB3Q12766 1538 aa24.4■■□□□ 1.5
CLCN2-202ENST00000344937 CC2D2AQ9P2K1 1620 aa24.34■■□□□ 1.49
CLCN2-202ENST00000344937 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.31■■□□□ 1.48
CLCN2-202ENST00000344937 WRNQ14191 1432 aaPredicted RBP eCLIP24.26■■□□□ 1.47
CLCN2-202ENST00000344937 SOGA1O94964 1423 aa24.21■■□□□ 1.47
CLCN2-202ENST00000344937 CCER1Q8TC90 406 aaPredicted RBP24.18■■□□□ 1.46
CLCN2-202ENST00000344937 SYNJ1O43426 1573 aa24.17■■□□□ 1.46
CLCN2-202ENST00000344937 RUSC2Q8N2Y8 1516 aa24.14■■□□□ 1.46
CLCN2-202ENST00000344937 CFTRP13569 1480 aa24.07■■□□□ 1.44
CLCN2-202ENST00000344937 DNAJC5BQ9UF47 199 aa24.05■■□□□ 1.44
CLCN2-202ENST00000344937 CSRNP3Q8WYN3 585 aa23.99■■□□□ 1.43
CLCN2-202ENST00000344937 CADPSQ9ULU8 1353 aa23.98■■□□□ 1.43
CLCN2-202ENST00000344937 ACIN1Q9UKV3 1341 aaKnown RBP23.97■■□□□ 1.43
CLCN2-202ENST00000344937 TOP2BQ02880 1626 aa23.92■■□□□ 1.42
CLCN2-202ENST00000344937 NEUROD1Q13562 356 aa23.92■■□□□ 1.42
CLCN2-202ENST00000344937 CUX1P39880 1505 aa23.9■■□□□ 1.42
CLCN2-202ENST00000344937 NESP48681 1621 aa23.87■■□□□ 1.41
CLCN2-202ENST00000344937 EEA1Q15075 1411 aa23.87■■□□□ 1.41
CLCN2-202ENST00000344937 UBTFP17480 764 aaKnown RBP23.86■■□□□ 1.41
CLCN2-202ENST00000344937 BIVM-ERCC5R4GMW8 1640 aa23.83■■□□□ 1.41
CLCN2-202ENST00000344937 DIEXFQ68CQ4 756 aaKnown RBP23.82■■□□□ 1.4
CLCN2-202ENST00000344937 GTF3C3Q9Y5Q9 886 aa23.81■■□□□ 1.4
CLCN2-202ENST00000344937 PRDM2Q13029 1718 aa23.79■■□□□ 1.4
CLCN2-202ENST00000344937 YTHDC1Q96MU7 727 aaKnown RBP23.75■■□□□ 1.39
CLCN2-202ENST00000344937 FANCD2Q9BXW9 1451 aa23.74■■□□□ 1.39
CLCN2-202ENST00000344937 GOLGA3Q08378 1498 aa23.69■■□□□ 1.38
CLCN2-202ENST00000344937 CEP162Q5TB80 1403 aa23.69■■□□□ 1.38
CLCN2-202ENST00000344937 TNIKQ9UKE5 1360 aa23.68■■□□□ 1.38
CLCN2-202ENST00000344937 RANGAP1P46060 587 aaPredicted RBP23.65■■□□□ 1.38
CLCN2-202ENST00000344937 CEP164Q9UPV0 1460 aa23.65■■□□□ 1.38
CLCN2-202ENST00000344937 RAPGEF2Q9Y4G8 1499 aa23.64■■□□□ 1.38
CLCN2-202ENST00000344937 CENPBP07199 599 aaPredicted RBP23.6■■□□□ 1.37
CLCN2-202ENST00000344937 FGD5Q6ZNL6 1462 aa23.6■■□□□ 1.37
CLCN2-202ENST00000344937 KIF21BO75037 1637 aa23.59■■□□□ 1.37
CLCN2-202ENST00000344937 KIF27Q86VH2 1401 aa23.58■■□□□ 1.36
CLCN2-202ENST00000344937 HNRNPUL2Q1KMD3 747 aaKnown RBP23.56■■□□□ 1.36
CLCN2-202ENST00000344937 LAMC3Q9Y6N6 1575 aa23.56■■□□□ 1.36
CLCN2-202ENST00000344937 CUX2O14529 1486 aa23.55■■□□□ 1.36
CLCN2-202ENST00000344937 TOPBP1Q92547 1522 aa23.5■■□□□ 1.35
CLCN2-202ENST00000344937 RAD54L2Q9Y4B4 1467 aa23.49■■□□□ 1.35
CLCN2-202ENST00000344937 PRXQ9BXM0 1461 aa23.47■■□□□ 1.35
CLCN2-202ENST00000344937 DNMBPQ6XZF7 1577 aa23.46■■□□□ 1.35
CLCN2-202ENST00000344937 PDS5BQ9NTI5 1447 aa23.46■■□□□ 1.35
CLCN2-202ENST00000344937 URB2Q14146 1524 aaKnown RBP23.45■■□□□ 1.34
CLCN2-202ENST00000344937 POLA1P09884 1462 aaPredicted RBP23.43■■□□□ 1.34
CLCN2-202ENST00000344937 CLIP1P30622 1438 aa23.42■■□□□ 1.34
CLCN2-202ENST00000344937 IGF1RP08069 1367 aa23.42■■□□□ 1.34
CLCN2-202ENST00000344937 KIF21AQ7Z4S6 1674 aa23.42■■□□□ 1.34
CLCN2-202ENST00000344937 ZNF316A6NFI3 1004 aaPredicted RBP23.38■■□□□ 1.33
CLCN2-202ENST00000344937 ERICH3Q5RHP9 1530 aa23.35■■□□□ 1.33
CLCN2-202ENST00000344937 MIER1Q8N108 512 aa23.31■■□□□ 1.32
CLCN2-202ENST00000344937 CARMIL1Q5VZK9 1371 aa23.31■■□□□ 1.32
CLCN2-202ENST00000344937 ABCA10Q8WWZ4 1543 aa23.28■■□□□ 1.32
CLCN2-202ENST00000344937 TDRD9Q8NDG6 1382 aaKnown RBP23.28■■□□□ 1.32
CLCN2-202ENST00000344937 VPS8Q8N3P4 1428 aa23.19■■□□□ 1.3
CLCN2-202ENST00000344937 APLP2Q06481 763 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms