RNA–Protein interactions for RNA: ENST00000344204.8

TRIO-202, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIO, Length 11,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-202ENST00000344204 PELP1Q8IZL8 1130 aaKnown RBP22.86■■□□□ 1.25
TRIO-202ENST00000344204 MYT1Q01538 1121 aa22.74■■□□□ 1.23
TRIO-202ENST00000344204 CENPBP07199 599 aaPredicted RBP21.52■■□□□ 1.04
TRIO-202ENST00000344204 PCGF6Q9BYE7 350 aa21.34■■□□□ 1.01
TRIO-202ENST00000344204 SUPT5HO00267 1087 aaKnown RBP21.28■■□□□ 1
TRIO-202ENST00000344204 ZEB1P37275 1124 aaPredicted RBP21.26■□□□□ 0.99
TRIO-202ENST00000344204 ERICH6Q7L0X2 663 aa21.24■□□□□ 0.99
TRIO-202ENST00000344204 CCER1Q8TC90 406 aaPredicted RBP21.09■□□□□ 0.97
TRIO-202ENST00000344204 TTBK1Q5TCY1 1321 aaPredicted RBP20.97■□□□□ 0.95
TRIO-202ENST00000344204 HRCP23327 699 aa20.95■□□□□ 0.94
TRIO-202ENST00000344204 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
TRIO-202ENST00000344204 NISCHQ9Y2I1 1504 aa20.94■□□□□ 0.94
TRIO-202ENST00000344204 SHROOM4Q9ULL8 1493 aa20.74■□□□□ 0.91
TRIO-202ENST00000344204 NEFLP07196 543 aa20.63■□□□□ 0.89
TRIO-202ENST00000344204 YTHDC1Q96MU7 727 aaKnown RBP20.61■□□□□ 0.89
TRIO-202ENST00000344204 EHMT2Q96KQ7 1210 aa20.49■□□□□ 0.87
TRIO-202ENST00000344204 APLP2Q06481 763 aa20.3■□□□□ 0.84
TRIO-202ENST00000344204 TRIM26Q12899 539 aaPredicted RBP20.29■□□□□ 0.84
TRIO-202ENST00000344204 PPARGC1BQ86YN6 1023 aaKnown RBP20.28■□□□□ 0.84
TRIO-202ENST00000344204 GTF3C3Q9Y5Q9 886 aa20.08■□□□□ 0.8
TRIO-202ENST00000344204 RTL5Q5HYW3 569 aaPredicted RBP20.07■□□□□ 0.8
TRIO-202ENST00000344204 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
TRIO-202ENST00000344204 DAXXQ9UER7 740 aaPredicted RBP19.96■□□□□ 0.79
TRIO-202ENST00000344204 DIEXFQ68CQ4 756 aaKnown RBP19.95■□□□□ 0.78
TRIO-202ENST00000344204 ACIN1Q9UKV3 1341 aaKnown RBP19.88■□□□□ 0.77
TRIO-202ENST00000344204 TRIM41Q8WV44 630 aa19.71■□□□□ 0.75
TRIO-202ENST00000344204 SCAF1Q9H7N4 1312 aaKnown RBP19.68■□□□□ 0.74
TRIO-202ENST00000344204 CLSPNQ9HAW4 1339 aa19.61■□□□□ 0.73
TRIO-202ENST00000344204 MYT1LQ9UL68 1186 aa19.6■□□□□ 0.73
TRIO-202ENST00000344204 ZNF316A6NFI3 1004 aaPredicted RBP19.59■□□□□ 0.73
TRIO-202ENST00000344204 GLIPR1L2Q4G1C9 344 aa19.59■□□□□ 0.73
TRIO-202ENST00000344204 CDK11AQ9UQ88 783 aaPredicted RBP19.47■□□□□ 0.71
TRIO-202ENST00000344204 BCANQ96GW7 911 aa19.47■□□□□ 0.71
TRIO-202ENST00000344204 EIF5BO60841 1220 aaKnown RBP19.47■□□□□ 0.71
TRIO-202ENST00000344204 BCL11AQ9H165 835 aa19.45■□□□□ 0.7
TRIO-202ENST00000344204 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.44■□□□□ 0.7
TRIO-202ENST00000344204 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
TRIO-202ENST00000344204 UBTFP17480 764 aaKnown RBP19.38■□□□□ 0.69
TRIO-202ENST00000344204 LOC105371045A0A1W2PR82 267 aa19.37■□□□□ 0.69
TRIO-202ENST00000344204 ANP32EQ9BTT0 268 aa19.28■□□□□ 0.68
TRIO-202ENST00000344204 NEUROD1Q13562 356 aa19.28■□□□□ 0.68
TRIO-202ENST00000344204 RANGAP1P46060 587 aaPredicted RBP19.25■□□□□ 0.67
TRIO-202ENST00000344204 CCDC180Q9P1Z9 1646 aa19.25■□□□□ 0.67
TRIO-202ENST00000344204 ANP32AP39687 249 aaKnown RBP19.25■□□□□ 0.67
TRIO-202ENST00000344204 DCAF1Q9Y4B6 1507 aa19.23■□□□□ 0.67
TRIO-202ENST00000344204 HNRNPUL2Q1KMD3 747 aaKnown RBP19.11■□□□□ 0.65
TRIO-202ENST00000344204 NBR1Q14596 966 aa19.01■□□□□ 0.63
TRIO-202ENST00000344204 ANP32CO43423 234 aa18.97■□□□□ 0.63
TRIO-202ENST00000344204 FKBP8Q14318 412 aa18.93■□□□□ 0.62
TRIO-202ENST00000344204 ATP1B4Q9UN42 357 aaPredicted RBP18.91■□□□□ 0.62
TRIO-202ENST00000344204 POLR3GLQ9BT43 218 aa18.87■□□□□ 0.61
TRIO-202ENST00000344204 ITGAEP38570 1179 aa18.83■□□□□ 0.61
TRIO-202ENST00000344204 NPM2Q86SE8 214 aaKnown RBP18.82■□□□□ 0.6
TRIO-202ENST00000344204 ANP32BQ92688 251 aaKnown RBP18.77■□□□□ 0.6
TRIO-202ENST00000344204 ZBTB47Q9UFB7 747 aaPredicted RBP18.76■□□□□ 0.59
TRIO-202ENST00000344204 CNGB1Q14028 1251 aaPredicted RBP18.7■□□□□ 0.58
TRIO-202ENST00000344204 TNNT2P45379 298 aaPredicted RBP18.61■□□□□ 0.57
TRIO-202ENST00000344204 MIER1Q8N108 512 aa18.59■□□□□ 0.57
TRIO-202ENST00000344204 CSRNP3Q8WYN3 585 aa18.59■□□□□ 0.57
TRIO-202ENST00000344204 DEKP35659 375 aaKnown RBP18.58■□□□□ 0.57
TRIO-202ENST00000344204 RTN4Q9NQC3 1192 aaKnown RBP18.58■□□□□ 0.56
TRIO-202ENST00000344204 ERICH6BQ5W0A0 696 aa18.57■□□□□ 0.56
TRIO-202ENST00000344204 NEFMP07197 916 aa18.55■□□□□ 0.56
TRIO-202ENST00000344204 SUPT16HQ9Y5B9 1047 aaKnown RBP18.47■□□□□ 0.55
TRIO-202ENST00000344204 CCDC136Q96JN2 1154 aa18.46■□□□□ 0.55
TRIO-202ENST00000344204 NOP58Q9Y2X3 529 aaKnown RBP18.46■□□□□ 0.55
TRIO-202ENST00000344204 PRKCSHP14314 528 aaPredicted RBP18.45■□□□□ 0.54
TRIO-202ENST00000344204 MYO15BQ96JP2 1530 aa18.45■□□□□ 0.54
TRIO-202ENST00000344204 NAP1L5Q96NT1 182 aaPredicted RBP18.45■□□□□ 0.54
TRIO-202ENST00000344204 HNRNPUQ00839 825 aaKnown RBP eCLIP18.43■□□□□ 0.54
TRIO-202ENST00000344204 DDRGK1Q96HY6 314 aa18.43■□□□□ 0.54
TRIO-202ENST00000344204 ARXQ96QS3 562 aa18.42■□□□□ 0.54
TRIO-202ENST00000344204 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.42■□□□□ 0.54
TRIO-202ENST00000344204 CANXP27824 592 aaKnown RBP18.4■□□□□ 0.54
TRIO-202ENST00000344204 UPF2Q9HAU5 1272 aaKnown RBP18.4■□□□□ 0.54
TRIO-202ENST00000344204 HSP90AA1P07900 732 aaKnown RBP18.37■□□□□ 0.53
TRIO-202ENST00000344204 TRIM52Q96A61 297 aa18.34■□□□□ 0.53
TRIO-202ENST00000344204 FAM50AQ14320 339 aaKnown RBP18.34■□□□□ 0.53
TRIO-202ENST00000344204 PPM1GO15355 546 aaPredicted RBP18.33■□□□□ 0.53
TRIO-202ENST00000344204 NCLP19338 710 aaKnown RBP18.31■□□□□ 0.52
TRIO-202ENST00000344204 TRIM44Q96DX7 344 aaPredicted RBP18.31■□□□□ 0.52
TRIO-202ENST00000344204 CDK11BP21127 795 aaKnown RBP18.29■□□□□ 0.52
TRIO-202ENST00000344204 IRX6P78412 446 aaPredicted RBP18.29■□□□□ 0.52
TRIO-202ENST00000344204 RBM19Q9Y4C8 960 aaKnown RBP18.26■□□□□ 0.51
TRIO-202ENST00000344204 DDX10Q13206 875 aaKnown RBP18.25■□□□□ 0.51
TRIO-202ENST00000344204 BECN1Q14457 450 aa18.23■□□□□ 0.51
TRIO-202ENST00000344204 LAS1LQ9Y4W2 734 aaKnown RBP18.23■□□□□ 0.51
TRIO-202ENST00000344204 TSHZ2Q9NRE2 1034 aa18.18■□□□□ 0.5
TRIO-202ENST00000344204 FAM9BQ8IZU0 186 aa18.13■□□□□ 0.49
TRIO-202ENST00000344204 TONSLQ96HA7 1378 aa18.12■□□□□ 0.49
TRIO-202ENST00000344204 RSPH6AQ9H0K4 717 aa18.12■□□□□ 0.49
TRIO-202ENST00000344204 PPP4R2Q9NY27 417 aa18.12■□□□□ 0.49
TRIO-202ENST00000344204 SLC4A1APQ9BWU0 796 aaKnown RBP18.11■□□□□ 0.49
TRIO-202ENST00000344204 L1TD1Q5T7N2 865 aaKnown RBP18.09■□□□□ 0.49
TRIO-202ENST00000344204 ZNF326Q5BKZ1 582 aaKnown RBP18.07■□□□□ 0.48
TRIO-202ENST00000344204 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.04■□□□□ 0.48
TRIO-202ENST00000344204 PKNOX2Q96KN3 472 aa18.02■□□□□ 0.47
TRIO-202ENST00000344204 MRS2Q9HD23 443 aa18■□□□□ 0.47
TRIO-202ENST00000344204 SLC24A1O60721 1099 aa18■□□□□ 0.47
TRIO-202ENST00000344204 GOLGA6L22H0YM25 854 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms