RNA–Protein interactions for RNA: ENST00000344135.5

TRIO-201, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 2 BASIC

Gene TRIO, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-201ENST00000344135 NISCHQ9Y2I1 1504 aa19.09■□□□□ 0.65
TRIO-201ENST00000344135 CCDC180Q9P1Z9 1646 aa16.43■□□□□ 0.22
TRIO-201ENST00000344135 DCAF8L2P0C7V8 631 aa16.13■□□□□ 0.17
TRIO-201ENST00000344135 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.16
TRIO-201ENST00000344135 SHROOM4Q9ULL8 1493 aa15.99■□□□□ 0.15
TRIO-201ENST00000344135 ABCC9O60706 1549 aa15.86■□□□□ 0.13
TRIO-201ENST00000344135 DCAF1Q9Y4B6 1507 aa15.6■□□□□ 0.09
TRIO-201ENST00000344135 SCRIBQ14160 1630 aa15.41■□□□□ 0.06
TRIO-201ENST00000344135 SUPT5HO00267 1087 aaKnown RBP15.39■□□□□ 0.05
TRIO-201ENST00000344135 MYO15BQ96JP2 1530 aa15.35■□□□□ 0.05
TRIO-201ENST00000344135 NACADO15069 1562 aa15.34■□□□□ 0.05
TRIO-201ENST00000344135 RB1CC1Q8TDY2 1594 aa15.24■□□□□ 0.03
TRIO-201ENST00000344135 PABPN1Q86U42 306 aaKnown RBP eCLIP15.08■□□□□ 0.01
TRIO-201ENST00000344135 UNC13AQ9UPW8 1703 aa15.02■□□□□ -0
TRIO-201ENST00000344135 CECR2Q9BXF3 1484 aa15□□□□□ -0.01
TRIO-201ENST00000344135 RSF1Q96T23 1441 aaPredicted RBP14.92□□□□□ -0.02
TRIO-201ENST00000344135 BICRAQ9NZM4 1560 aa14.89□□□□□ -0.03
TRIO-201ENST00000344135 MROH2BQ7Z745 1585 aa14.86□□□□□ -0.03
TRIO-201ENST00000344135 WIZO95785 1651 aa14.74□□□□□ -0.05
TRIO-201ENST00000344135 BAZ1AQ9NRL2 1556 aaPredicted RBP14.69□□□□□ -0.06
TRIO-201ENST00000344135 SMARCA4P51532 1647 aa14.65□□□□□ -0.06
TRIO-201ENST00000344135 CHIC1Q5VXU3 224 aa14.64□□□□□ -0.07
TRIO-201ENST00000344135 TOP2AP11388 1531 aaKnown RBP14.44□□□□□ -0.1
TRIO-201ENST00000344135 ATAD2BQ9ULI0 1458 aa14.44□□□□□ -0.1
TRIO-201ENST00000344135 EIF4G1Q04637 1599 aaKnown RBP14.43□□□□□ -0.1
TRIO-201ENST00000344135 CCDC88BA6NC98 1476 aa14.42□□□□□ -0.1
TRIO-201ENST00000344135 SMARCA2P51531 1590 aa14.37□□□□□ -0.11
TRIO-201ENST00000344135 PEG3Q9GZU2 1588 aa14.36□□□□□ -0.11
TRIO-201ENST00000344135 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
TRIO-201ENST00000344135 TRIM41Q8WV44 630 aa14.33□□□□□ -0.12
TRIO-201ENST00000344135 FAM9AQ8IZU1 332 aaPredicted RBP14.27□□□□□ -0.13
TRIO-201ENST00000344135 LOC105371045A0A1W2PR82 267 aa14.25□□□□□ -0.13
TRIO-201ENST00000344135 NCAPD3P42695 1498 aa14.23□□□□□ -0.13
TRIO-201ENST00000344135 ABCC8Q09428 1581 aa14.23□□□□□ -0.13
TRIO-201ENST00000344135 CC2D2AQ9P2K1 1620 aa14.22□□□□□ -0.13
TRIO-201ENST00000344135 EHMT2Q96KQ7 1210 aa14.22□□□□□ -0.13
TRIO-201ENST00000344135 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
TRIO-201ENST00000344135 HMGXB3Q12766 1538 aa14.15□□□□□ -0.14
TRIO-201ENST00000344135 WRNQ14191 1432 aaPredicted RBP eCLIP14.02□□□□□ -0.17
TRIO-201ENST00000344135 SOGA1O94964 1423 aa13.99□□□□□ -0.17
TRIO-201ENST00000344135 SYNJ1O43426 1573 aa13.98□□□□□ -0.17
TRIO-201ENST00000344135 CFTRP13569 1480 aa13.97□□□□□ -0.17
TRIO-201ENST00000344135 RUSC2Q8N2Y8 1516 aa13.97□□□□□ -0.17
TRIO-201ENST00000344135 NESP48681 1621 aa13.96□□□□□ -0.17
TRIO-201ENST00000344135 CADPSQ9ULU8 1353 aa13.94□□□□□ -0.18
TRIO-201ENST00000344135 CUX1P39880 1505 aa13.85□□□□□ -0.19
TRIO-201ENST00000344135 CSRNP3Q8WYN3 585 aa13.82□□□□□ -0.2
TRIO-201ENST00000344135 FANCD2Q9BXW9 1451 aa13.81□□□□□ -0.2
TRIO-201ENST00000344135 TOP2BQ02880 1626 aa13.81□□□□□ -0.2
TRIO-201ENST00000344135 UBTFP17480 764 aaKnown RBP13.75□□□□□ -0.21
TRIO-201ENST00000344135 BIVM-ERCC5R4GMW8 1640 aa13.75□□□□□ -0.21
TRIO-201ENST00000344135 PRDM2Q13029 1718 aa13.75□□□□□ -0.21
TRIO-201ENST00000344135 RANGAP1P46060 587 aaPredicted RBP13.72□□□□□ -0.21
TRIO-201ENST00000344135 FGD5Q6ZNL6 1462 aa13.7□□□□□ -0.22
TRIO-201ENST00000344135 LAMC3Q9Y6N6 1575 aa13.7□□□□□ -0.22
TRIO-201ENST00000344135 PPARGC1BQ86YN6 1023 aaKnown RBP13.69□□□□□ -0.22
TRIO-201ENST00000344135 EEA1Q15075 1411 aa13.68□□□□□ -0.22
TRIO-201ENST00000344135 CEP164Q9UPV0 1460 aa13.68□□□□□ -0.22
TRIO-201ENST00000344135 RAD54L2Q9Y4B4 1467 aa13.67□□□□□ -0.22
TRIO-201ENST00000344135 RAPGEF2Q9Y4G8 1499 aa13.66□□□□□ -0.22
TRIO-201ENST00000344135 URB2Q14146 1524 aaKnown RBP13.66□□□□□ -0.22
TRIO-201ENST00000344135 TOPBP1Q92547 1522 aa13.65□□□□□ -0.22
TRIO-201ENST00000344135 KIF21AQ7Z4S6 1674 aa13.65□□□□□ -0.22
TRIO-201ENST00000344135 PDS5BQ9NTI5 1447 aa13.65□□□□□ -0.22
TRIO-201ENST00000344135 CUX2O14529 1486 aa13.65□□□□□ -0.22
TRIO-201ENST00000344135 PCGF6Q9BYE7 350 aa13.63□□□□□ -0.23
TRIO-201ENST00000344135 POLA1P09884 1462 aaPredicted RBP13.62□□□□□ -0.23
TRIO-201ENST00000344135 KIF27Q86VH2 1401 aa13.62□□□□□ -0.23
TRIO-201ENST00000344135 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
TRIO-201ENST00000344135 CEP162Q5TB80 1403 aa13.61□□□□□ -0.23
TRIO-201ENST00000344135 DNMBPQ6XZF7 1577 aa13.6□□□□□ -0.23
TRIO-201ENST00000344135 TTBK1Q5TCY1 1321 aaPredicted RBP13.59□□□□□ -0.23
TRIO-201ENST00000344135 TNIKQ9UKE5 1360 aa13.58□□□□□ -0.23
TRIO-201ENST00000344135 TDRD9Q8NDG6 1382 aaKnown RBP13.57□□□□□ -0.24
TRIO-201ENST00000344135 IGF1RP08069 1367 aa13.56□□□□□ -0.24
TRIO-201ENST00000344135 PRXQ9BXM0 1461 aa13.54□□□□□ -0.24
TRIO-201ENST00000344135 KIF21BO75037 1637 aa13.54□□□□□ -0.24
TRIO-201ENST00000344135 ERCC6Q03468 1493 aa13.51□□□□□ -0.25
TRIO-201ENST00000344135 ABCA10Q8WWZ4 1543 aa13.49□□□□□ -0.25
TRIO-201ENST00000344135 CARMIL1Q5VZK9 1371 aa13.49□□□□□ -0.25
TRIO-201ENST00000344135 MRC2Q9UBG0 1479 aa13.47□□□□□ -0.25
TRIO-201ENST00000344135 CLIP1P30622 1438 aa13.47□□□□□ -0.25
TRIO-201ENST00000344135 AQRO60306 1485 aaKnown RBP eCLIP13.44□□□□□ -0.264e-6■■□□□ 13.9
TRIO-201ENST00000344135 ERICH3Q5RHP9 1530 aa13.42□□□□□ -0.26
TRIO-201ENST00000344135 ZNF608Q9ULD9 1512 aaPredicted RBP13.42□□□□□ -0.26
TRIO-201ENST00000344135 TRIM26Q12899 539 aaPredicted RBP13.41□□□□□ -0.26
TRIO-201ENST00000344135 GAPVD1Q14C86 1478 aa13.41□□□□□ -0.26
TRIO-201ENST00000344135 TARBP1Q13395 1621 aaKnown RBP13.41□□□□□ -0.26
TRIO-201ENST00000344135 P3H3Q8IVL6 736 aa13.39□□□□□ -0.27
TRIO-201ENST00000344135 WDR97A6NE52 1622 aa13.39□□□□□ -0.27
TRIO-201ENST00000344135 WDR62O43379 1518 aa13.37□□□□□ -0.27
TRIO-201ENST00000344135 ABCA5Q8WWZ7 1642 aa13.36□□□□□ -0.27
TRIO-201ENST00000344135 ARAP1Q96P48 1450 aa13.35□□□□□ -0.27
TRIO-201ENST00000344135 THOC2Q8NI27 1593 aaKnown RBP13.35□□□□□ -0.27
TRIO-201ENST00000344135 ARHGAP35Q9NRY4 1499 aa13.32□□□□□ -0.28
TRIO-201ENST00000344135 VPS8Q8N3P4 1428 aa13.31□□□□□ -0.28
TRIO-201ENST00000344135 IFT140Q96RY7 1462 aa13.29□□□□□ -0.28
TRIO-201ENST00000344135 FBLN2P98095 1184 aa13.28□□□□□ -0.28
TRIO-201ENST00000344135 CUL7Q14999 1698 aa13.27□□□□□ -0.29
TRIO-201ENST00000344135 PBRM1Q86U86 1689 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms