RNA–Protein interactions for RNA: ENST00000342287.9

PBX3-201, Transcript of PBX homeobox 3, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene PBX3, Length 2,755 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PBX3-201ENST00000342287 NISCHQ9Y2I1 1504 aa32.52■■■□□ 2.8
PBX3-201ENST00000342287 CCDC180Q9P1Z9 1646 aa28.27■■■□□ 2.12
PBX3-201ENST00000342287 ZCCHC6Q5VYS8 1495 aaKnown RBP27.31■■□□□ 1.96
PBX3-201ENST00000342287 DCAF8L2P0C7V8 631 aa26.93■■□□□ 1.9
PBX3-201ENST00000342287 DCAF1Q9Y4B6 1507 aa26.88■■□□□ 1.89
PBX3-201ENST00000342287 ABCC9O60706 1549 aa26.74■■□□□ 1.87
PBX3-201ENST00000342287 SHROOM4Q9ULL8 1493 aa26.6■■□□□ 1.85
PBX3-201ENST00000342287 MYO15BQ96JP2 1530 aa26.54■■□□□ 1.84
PBX3-201ENST00000342287 NACADO15069 1562 aa26.36■■□□□ 1.81
PBX3-201ENST00000342287 RB1CC1Q8TDY2 1594 aa26.11■■□□□ 1.77
PBX3-201ENST00000342287 SCRIBQ14160 1630 aa26.03■■□□□ 1.76
PBX3-201ENST00000342287 SUPT5HO00267 1087 aaKnown RBP25.67■■□□□ 1.7
PBX3-201ENST00000342287 UNC13AQ9UPW8 1703 aa25.51■■□□□ 1.67
PBX3-201ENST00000342287 BICRAQ9NZM4 1560 aa25.31■■□□□ 1.64
PBX3-201ENST00000342287 RSF1Q96T23 1441 aaPredicted RBP25.27■■□□□ 1.64
PBX3-201ENST00000342287 PABPN1Q86U42 306 aaKnown RBP eCLIP25.27■■□□□ 1.64
PBX3-201ENST00000342287 CECR2Q9BXF3 1484 aa25.27■■□□□ 1.64
PBX3-201ENST00000342287 MROH2BQ7Z745 1585 aa25.12■■□□□ 1.61
PBX3-201ENST00000342287 BAZ1AQ9NRL2 1556 aaPredicted RBP25.1■■□□□ 1.61
PBX3-201ENST00000342287 SMARCA4P51532 1647 aa24.95■■□□□ 1.59
PBX3-201ENST00000342287 WIZO95785 1651 aa24.89■■□□□ 1.58
PBX3-201ENST00000342287 PEG3Q9GZU2 1588 aa24.66■■□□□ 1.54
PBX3-201ENST00000342287 TOP2AP11388 1531 aaKnown RBP24.65■■□□□ 1.54
PBX3-201ENST00000342287 CHIC1Q5VXU3 224 aa24.6■■□□□ 1.53
PBX3-201ENST00000342287 ATAD2BQ9ULI0 1458 aa24.56■■□□□ 1.52
PBX3-201ENST00000342287 EIF4G1Q04637 1599 aaKnown RBP24.55■■□□□ 1.52
PBX3-201ENST00000342287 SMARCA2P51531 1590 aa24.55■■□□□ 1.52
PBX3-201ENST00000342287 PELP1Q8IZL8 1130 aaKnown RBP24.43■■□□□ 1.5
PBX3-201ENST00000342287 CCDC88BA6NC98 1476 aa24.43■■□□□ 1.5
PBX3-201ENST00000342287 BAZ1BQ9UIG0 1483 aaKnown RBP24.43■■□□□ 1.5
PBX3-201ENST00000342287 NCAPD3P42695 1498 aa24.36■■□□□ 1.49
PBX3-201ENST00000342287 HMGXB3Q12766 1538 aa24.29■■□□□ 1.48
PBX3-201ENST00000342287 CC2D2AQ9P2K1 1620 aa24.17■■□□□ 1.46
PBX3-201ENST00000342287 TRIM41Q8WV44 630 aa24.14■■□□□ 1.46
PBX3-201ENST00000342287 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
PBX3-201ENST00000342287 CFTRP13569 1480 aa23.83■■□□□ 1.41
PBX3-201ENST00000342287 HRCP23327 699 aa23.8■■□□□ 1.4
PBX3-201ENST00000342287 WRNQ14191 1432 aaPredicted RBP eCLIP23.79■■□□□ 1.4
PBX3-201ENST00000342287 MYT1Q01538 1121 aa23.79■■□□□ 1.4
PBX3-201ENST00000342287 CADPSQ9ULU8 1353 aa23.75■■□□□ 1.39
PBX3-201ENST00000342287 FAM9AQ8IZU1 332 aaPredicted RBP23.69■■□□□ 1.38
PBX3-201ENST00000342287 LOC105371045A0A1W2PR82 267 aa23.67■■□□□ 1.38
PBX3-201ENST00000342287 SYNJ1O43426 1573 aa23.64■■□□□ 1.37
PBX3-201ENST00000342287 PRDM2Q13029 1718 aa23.61■■□□□ 1.37
PBX3-201ENST00000342287 DNAJC5BQ9UF47 199 aa23.58■■□□□ 1.37
PBX3-201ENST00000342287 TOP2BQ02880 1626 aa23.55■■□□□ 1.36
PBX3-201ENST00000342287 SOGA1O94964 1423 aa23.51■■□□□ 1.35
PBX3-201ENST00000342287 BIVM-ERCC5R4GMW8 1640 aa23.5■■□□□ 1.35
PBX3-201ENST00000342287 EEA1Q15075 1411 aa23.49■■□□□ 1.35
PBX3-201ENST00000342287 LAMC3Q9Y6N6 1575 aa23.49■■□□□ 1.35
PBX3-201ENST00000342287 NESP48681 1621 aa23.48■■□□□ 1.35
PBX3-201ENST00000342287 CUX1P39880 1505 aa23.48■■□□□ 1.35
PBX3-201ENST00000342287 FANCD2Q9BXW9 1451 aa23.47■■□□□ 1.35
PBX3-201ENST00000342287 PPARGC1BQ86YN6 1023 aaKnown RBP23.41■■□□□ 1.34
PBX3-201ENST00000342287 RUSC2Q8N2Y8 1516 aa23.41■■□□□ 1.34
PBX3-201ENST00000342287 CSRNP3Q8WYN3 585 aa23.4■■□□□ 1.34
PBX3-201ENST00000342287 PDS5BQ9NTI5 1447 aa23.35■■□□□ 1.33
PBX3-201ENST00000342287 EHMT2Q96KQ7 1210 aa23.35■■□□□ 1.33
PBX3-201ENST00000342287 CEP164Q9UPV0 1460 aa23.31■■□□□ 1.32
PBX3-201ENST00000342287 DNMBPQ6XZF7 1577 aa23.24■■□□□ 1.31
PBX3-201ENST00000342287 FGD5Q6ZNL6 1462 aa23.22■■□□□ 1.31
PBX3-201ENST00000342287 TOPBP1Q92547 1522 aa23.21■■□□□ 1.31
PBX3-201ENST00000342287 KIF27Q86VH2 1401 aa23.19■■□□□ 1.3
PBX3-201ENST00000342287 URB2Q14146 1524 aaKnown RBP23.16■■□□□ 1.3
PBX3-201ENST00000342287 GOLGA3Q08378 1498 aa23.15■■□□□ 1.3
PBX3-201ENST00000342287 KIF21AQ7Z4S6 1674 aa23.15■■□□□ 1.3
PBX3-201ENST00000342287 KIF21BO75037 1637 aa23.13■■□□□ 1.29
PBX3-201ENST00000342287 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
PBX3-201ENST00000342287 TNIKQ9UKE5 1360 aa23.12■■□□□ 1.29
PBX3-201ENST00000342287 UBTFP17480 764 aaKnown RBP23.12■■□□□ 1.29
PBX3-201ENST00000342287 POLA1P09884 1462 aaPredicted RBP23.11■■□□□ 1.29
PBX3-201ENST00000342287 CUX2O14529 1486 aa23.1■■□□□ 1.29
PBX3-201ENST00000342287 RAD54L2Q9Y4B4 1467 aa23.04■■□□□ 1.28
PBX3-201ENST00000342287 PRXQ9BXM0 1461 aa23.04■■□□□ 1.28
PBX3-201ENST00000342287 ABCA10Q8WWZ4 1543 aa23.03■■□□□ 1.28
PBX3-201ENST00000342287 RAPGEF2Q9Y4G8 1499 aa23.02■■□□□ 1.28
PBX3-201ENST00000342287 MRC2Q9UBG0 1479 aa23.02■■□□□ 1.27
PBX3-201ENST00000342287 IGF1RP08069 1367 aa22.99■■□□□ 1.27
PBX3-201ENST00000342287 ERICH3Q5RHP9 1530 aa22.98■■□□□ 1.27
PBX3-201ENST00000342287 CEP162Q5TB80 1403 aa22.98■■□□□ 1.27
PBX3-201ENST00000342287 PCGF6Q9BYE7 350 aa22.96■■□□□ 1.27
PBX3-201ENST00000342287 ERCC6Q03468 1493 aa22.94■■□□□ 1.26
PBX3-201ENST00000342287 CARMIL1Q5VZK9 1371 aa22.88■■□□□ 1.25
PBX3-201ENST00000342287 WDR97A6NE52 1622 aa22.87■■□□□ 1.25
PBX3-201ENST00000342287 WDR62O43379 1518 aa22.87■■□□□ 1.25
PBX3-201ENST00000342287 TDRD9Q8NDG6 1382 aaKnown RBP22.84■■□□□ 1.25
PBX3-201ENST00000342287 TARBP1Q13395 1621 aaKnown RBP22.83■■□□□ 1.25
PBX3-201ENST00000342287 CLIP1P30622 1438 aa22.8■■□□□ 1.24
PBX3-201ENST00000342287 GAPVD1Q14C86 1478 aa22.8■■□□□ 1.24
PBX3-201ENST00000342287 ABCA5Q8WWZ7 1642 aa22.79■■□□□ 1.24
PBX3-201ENST00000342287 IFT140Q96RY7 1462 aa22.76■■□□□ 1.23
PBX3-201ENST00000342287 THOC2Q8NI27 1593 aaKnown RBP22.76■■□□□ 1.23
PBX3-201ENST00000342287 CUL7Q14999 1698 aa22.74■■□□□ 1.23
PBX3-201ENST00000342287 RANGAP1P46060 587 aaPredicted RBP22.71■■□□□ 1.23
PBX3-201ENST00000342287 AQRO60306 1485 aaKnown RBP eCLIP22.67■■□□□ 1.22
PBX3-201ENST00000342287 TRIM26Q12899 539 aaPredicted RBP22.66■■□□□ 1.22
PBX3-201ENST00000342287 ZNF608Q9ULD9 1512 aaPredicted RBP22.61■■□□□ 1.21
PBX3-201ENST00000342287 GRIN2BQ13224 1484 aa22.61■■□□□ 1.21
PBX3-201ENST00000342287 VPS8Q8N3P4 1428 aa22.6■■□□□ 1.21
PBX3-201ENST00000342287 TTBK1Q5TCY1 1321 aaPredicted RBP22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 172 ms