RNA–Protein interactions for RNA: ENST00000340650.5

NHLRC1-201, Transcript of NHL repeat containing E3 ubiquitin protein ligase 1, humanhuman

APPRIS P1 BASIC

Gene NHLRC1, Length 2,248 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1-201ENST00000340650 NISCHQ9Y2I1 1504 aa42.57■■■■■ 4.41
NHLRC1-201ENST00000340650 CCDC180Q9P1Z9 1646 aa36.89■■■■□ 3.5
NHLRC1-201ENST00000340650 ZCCHC6Q5VYS8 1495 aaKnown RBP35.78■■■■□ 3.32
NHLRC1-201ENST00000340650 DCAF8L2P0C7V8 631 aa35.43■■■■□ 3.26
NHLRC1-201ENST00000340650 SHROOM4Q9ULL8 1493 aa35.16■■■■□ 3.22
NHLRC1-201ENST00000340650 DCAF1Q9Y4B6 1507 aa35.05■■■■□ 3.2
NHLRC1-201ENST00000340650 ABCC9O60706 1549 aa35.04■■■■□ 3.2
NHLRC1-201ENST00000340650 MYO15BQ96JP2 1530 aa34.53■■■■□ 3.12
NHLRC1-201ENST00000340650 NACADO15069 1562 aa34.37■■■■□ 3.09
NHLRC1-201ENST00000340650 SCRIBQ14160 1630 aa34.21■■■■□ 3.07
NHLRC1-201ENST00000340650 RB1CC1Q8TDY2 1594 aa34.07■■■■□ 3.04
NHLRC1-201ENST00000340650 SUPT5HO00267 1087 aaKnown RBP33.89■■■■□ 3.02
NHLRC1-201ENST00000340650 UNC13AQ9UPW8 1703 aa33.43■■■□□ 2.94
NHLRC1-201ENST00000340650 CECR2Q9BXF3 1484 aa33.19■■■□□ 2.9
NHLRC1-201ENST00000340650 PABPN1Q86U42 306 aaKnown RBP eCLIP33.18■■■□□ 2.9
NHLRC1-201ENST00000340650 RSF1Q96T23 1441 aaPredicted RBP33.16■■■□□ 2.9
NHLRC1-201ENST00000340650 BICRAQ9NZM4 1560 aa33.11■■■□□ 2.89
NHLRC1-201ENST00000340650 MROH2BQ7Z745 1585 aa32.98■■■□□ 2.87
NHLRC1-201ENST00000340650 BAZ1AQ9NRL2 1556 aaPredicted RBP32.83■■■□□ 2.85
NHLRC1-201ENST00000340650 WIZO95785 1651 aa32.72■■■□□ 2.83
NHLRC1-201ENST00000340650 SMARCA4P51532 1647 aa32.69■■■□□ 2.82
NHLRC1-201ENST00000340650 CHIC1Q5VXU3 224 aa32.47■■■□□ 2.79
NHLRC1-201ENST00000340650 HRCP23327 699 aa32.44■■■□□ 2.78
NHLRC1-201ENST00000340650 TOP2AP11388 1531 aaKnown RBP32.29■■■□□ 2.76
NHLRC1-201ENST00000340650 PEG3Q9GZU2 1588 aa32.18■■■□□ 2.74
NHLRC1-201ENST00000340650 ATAD2BQ9ULI0 1458 aa32.14■■■□□ 2.74
NHLRC1-201ENST00000340650 EIF4G1Q04637 1599 aaKnown RBP32.11■■■□□ 2.73
NHLRC1-201ENST00000340650 CCDC88BA6NC98 1476 aa32.05■■■□□ 2.72
NHLRC1-201ENST00000340650 SMARCA2P51531 1590 aa32.05■■■□□ 2.72
NHLRC1-201ENST00000340650 BAZ1BQ9UIG0 1483 aaKnown RBP31.98■■■□□ 2.71
NHLRC1-201ENST00000340650 PCGF6Q9BYE7 350 aa31.92■■■□□ 2.7
NHLRC1-201ENST00000340650 NCAPD3P42695 1498 aa31.77■■■□□ 2.68
NHLRC1-201ENST00000340650 TRIM41Q8WV44 630 aa31.75■■■□□ 2.67
NHLRC1-201ENST00000340650 HMGXB3Q12766 1538 aa31.7■■■□□ 2.67
NHLRC1-201ENST00000340650 CC2D2AQ9P2K1 1620 aa31.61■■■□□ 2.65
NHLRC1-201ENST00000340650 PPARGC1BQ86YN6 1023 aaKnown RBP31.55■■■□□ 2.64
NHLRC1-201ENST00000340650 ABCC8Q09428 1581 aa31.51■■■□□ 2.63
NHLRC1-201ENST00000340650 LOC105371045A0A1W2PR82 267 aa31.44■■■□□ 2.62
NHLRC1-201ENST00000340650 FAM9AQ8IZU1 332 aaPredicted RBP31.33■■■□□ 2.61
NHLRC1-201ENST00000340650 TRIM26Q12899 539 aaPredicted RBP31.3■■■□□ 2.6
NHLRC1-201ENST00000340650 WRNQ14191 1432 aaPredicted RBP eCLIP31.2■■■□□ 2.58
NHLRC1-201ENST00000340650 CFTRP13569 1480 aa31.15■■■□□ 2.58
NHLRC1-201ENST00000340650 SYNJ1O43426 1573 aa31.08■■■□□ 2.57
NHLRC1-201ENST00000340650 CADPSQ9ULU8 1353 aa31.03■■■□□ 2.56
NHLRC1-201ENST00000340650 EHMT2Q96KQ7 1210 aa31.02■■■□□ 2.56
NHLRC1-201ENST00000340650 DNAJC5BQ9UF47 199 aa31.01■■■□□ 2.55
NHLRC1-201ENST00000340650 SOGA1O94964 1423 aa30.96■■■□□ 2.55
NHLRC1-201ENST00000340650 ZEB1P37275 1124 aaPredicted RBP30.92■■■□□ 2.54
NHLRC1-201ENST00000340650 PRDM2Q13029 1718 aa30.87■■■□□ 2.53
NHLRC1-201ENST00000340650 TOP2BQ02880 1626 aa30.85■■■□□ 2.53
NHLRC1-201ENST00000340650 RUSC2Q8N2Y8 1516 aa30.85■■■□□ 2.53
NHLRC1-201ENST00000340650 NESP48681 1621 aa30.83■■■□□ 2.53
NHLRC1-201ENST00000340650 CUX1P39880 1505 aa30.81■■■□□ 2.52
NHLRC1-201ENST00000340650 BIVM-ERCC5R4GMW8 1640 aa30.78■■■□□ 2.52
NHLRC1-201ENST00000340650 FANCD2Q9BXW9 1451 aa30.72■■■□□ 2.51
NHLRC1-201ENST00000340650 EEA1Q15075 1411 aa30.71■■■□□ 2.51
NHLRC1-201ENST00000340650 CSRNP3Q8WYN3 585 aa30.69■■■□□ 2.5
NHLRC1-201ENST00000340650 LAMC3Q9Y6N6 1575 aa30.63■■■□□ 2.49
NHLRC1-201ENST00000340650 CEP164Q9UPV0 1460 aa30.48■■■□□ 2.47
NHLRC1-201ENST00000340650 PDS5BQ9NTI5 1447 aa30.46■■■□□ 2.47
NHLRC1-201ENST00000340650 FGD5Q6ZNL6 1462 aa30.45■■■□□ 2.47
NHLRC1-201ENST00000340650 UBTFP17480 764 aaKnown RBP30.41■■■□□ 2.46
NHLRC1-201ENST00000340650 DNMBPQ6XZF7 1577 aa30.4■■■□□ 2.46
NHLRC1-201ENST00000340650 GOLGA3Q08378 1498 aa30.39■■■□□ 2.46
NHLRC1-201ENST00000340650 TOPBP1Q92547 1522 aa30.38■■■□□ 2.45
NHLRC1-201ENST00000340650 KIF27Q86VH2 1401 aa30.37■■■□□ 2.45
NHLRC1-201ENST00000340650 PELP1Q8IZL8 1130 aaKnown RBP30.36■■■□□ 2.45
NHLRC1-201ENST00000340650 KIF21AQ7Z4S6 1674 aa30.35■■■□□ 2.45
NHLRC1-201ENST00000340650 KIF21BO75037 1637 aa30.34■■■□□ 2.45
NHLRC1-201ENST00000340650 URB2Q14146 1524 aaKnown RBP30.33■■■□□ 2.45
NHLRC1-201ENST00000340650 TNIKQ9UKE5 1360 aa30.32■■■□□ 2.45
NHLRC1-201ENST00000340650 CUX2O14529 1486 aa30.31■■■□□ 2.44
NHLRC1-201ENST00000340650 RAPGEF2Q9Y4G8 1499 aa30.29■■■□□ 2.44
NHLRC1-201ENST00000340650 POLA1P09884 1462 aaPredicted RBP30.27■■■□□ 2.44
NHLRC1-201ENST00000340650 CEP162Q5TB80 1403 aa30.26■■■□□ 2.43
NHLRC1-201ENST00000340650 RAD54L2Q9Y4B4 1467 aa30.26■■■□□ 2.43
NHLRC1-201ENST00000340650 PRXQ9BXM0 1461 aa30.19■■■□□ 2.42
NHLRC1-201ENST00000340650 SCAF1Q9H7N4 1312 aaKnown RBP30.19■■■□□ 2.42
NHLRC1-201ENST00000340650 IGF1RP08069 1367 aa30.12■■■□□ 2.41
NHLRC1-201ENST00000340650 ABCA10Q8WWZ4 1543 aa30.11■■■□□ 2.41
NHLRC1-201ENST00000340650 ERICH3Q5RHP9 1530 aa30.09■■■□□ 2.41
NHLRC1-201ENST00000340650 MRC2Q9UBG0 1479 aa30.06■■■□□ 2.4
NHLRC1-201ENST00000340650 RANGAP1P46060 587 aaPredicted RBP30.04■■■□□ 2.4
NHLRC1-201ENST00000340650 ERCC6Q03468 1493 aa29.99■■■□□ 2.39
NHLRC1-201ENST00000340650 CARMIL1Q5VZK9 1371 aa29.97■■■□□ 2.39
NHLRC1-201ENST00000340650 CLIP1P30622 1438 aa29.97■■■□□ 2.39
NHLRC1-201ENST00000340650 TDRD9Q8NDG6 1382 aaKnown RBP29.97■■■□□ 2.39
NHLRC1-201ENST00000340650 WDR97A6NE52 1622 aa29.95■■■□□ 2.39
NHLRC1-201ENST00000340650 TARBP1Q13395 1621 aaKnown RBP29.88■■■□□ 2.37
NHLRC1-201ENST00000340650 WDR62O43379 1518 aa29.87■■■□□ 2.37
NHLRC1-201ENST00000340650 ABCA5Q8WWZ7 1642 aa29.85■■■□□ 2.37
NHLRC1-201ENST00000340650 GAPVD1Q14C86 1478 aa29.84■■■□□ 2.37
NHLRC1-201ENST00000340650 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.83■■■□□ 2.37
NHLRC1-201ENST00000340650 CCER1Q8TC90 406 aaPredicted RBP29.81■■■□□ 2.36
NHLRC1-201ENST00000340650 ACIN1Q9UKV3 1341 aaKnown RBP29.75■■■□□ 2.35
NHLRC1-201ENST00000340650 THOC2Q8NI27 1593 aaKnown RBP29.75■■■□□ 2.35
NHLRC1-201ENST00000340650 CUL7Q14999 1698 aa29.75■■■□□ 2.35
NHLRC1-201ENST00000340650 AQRO60306 1485 aaKnown RBP eCLIP29.73■■■□□ 2.35
NHLRC1-201ENST00000340650 TTBK1Q5TCY1 1321 aaPredicted RBP29.7■■■□□ 2.35
NHLRC1-201ENST00000340650 IFT140Q96RY7 1462 aa29.7■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms