RNA–Protein interactions for RNA: ENST00000340413.6

NUP43-201, Transcript of nucleoporin 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP43, Length 3,874 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP43-201ENST00000340413 NISCHQ9Y2I1 1504 aa16.77■□□□□ 0.28
NUP43-201ENST00000340413 CCDC180Q9P1Z9 1646 aa14.95□□□□□ -0.02
NUP43-201ENST00000340413 DCAF1Q9Y4B6 1507 aa14.15□□□□□ -0.14
NUP43-201ENST00000340413 ZCCHC6Q5VYS8 1495 aaKnown RBP14.12□□□□□ -0.15
NUP43-201ENST00000340413 MYO15BQ96JP2 1530 aa14.08□□□□□ -0.16
NUP43-201ENST00000340413 NACADO15069 1562 aa13.83□□□□□ -0.19
NUP43-201ENST00000340413 RB1CC1Q8TDY2 1594 aa13.67□□□□□ -0.22
NUP43-201ENST00000340413 ABCC9O60706 1549 aa13.63□□□□□ -0.23
NUP43-201ENST00000340413 SHROOM4Q9ULL8 1493 aa13.42□□□□□ -0.26
NUP43-201ENST00000340413 UNC13AQ9UPW8 1703 aa13.33□□□□□ -0.28
NUP43-201ENST00000340413 SCRIBQ14160 1630 aa13.29□□□□□ -0.28
NUP43-201ENST00000340413 DCAF8L2P0C7V8 631 aa13.22□□□□□ -0.29
NUP43-201ENST00000340413 BICRAQ9NZM4 1560 aa13.16□□□□□ -0.3
NUP43-201ENST00000340413 BAZ1AQ9NRL2 1556 aaPredicted RBP13.02□□□□□ -0.33
NUP43-201ENST00000340413 PEG3Q9GZU2 1588 aa12.96□□□□□ -0.34
NUP43-201ENST00000340413 SMARCA4P51532 1647 aa12.93□□□□□ -0.34
NUP43-201ENST00000340413 RSF1Q96T23 1441 aaPredicted RBP12.86□□□□□ -0.35
NUP43-201ENST00000340413 MROH2BQ7Z745 1585 aa12.81□□□□□ -0.36
NUP43-201ENST00000340413 SMARCA2P51531 1590 aa12.81□□□□□ -0.36
NUP43-201ENST00000340413 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
NUP43-201ENST00000340413 TOP2AP11388 1531 aaKnown RBP12.77□□□□□ -0.37
NUP43-201ENST00000340413 EIF4G1Q04637 1599 aaKnown RBP12.75□□□□□ -0.37
NUP43-201ENST00000340413 HMGXB3Q12766 1538 aa12.75□□□□□ -0.37
NUP43-201ENST00000340413 WIZO95785 1651 aa12.71□□□□□ -0.38
NUP43-201ENST00000340413 NCAPD3P42695 1498 aa12.67□□□□□ -0.38
NUP43-201ENST00000340413 ATAD2BQ9ULI0 1458 aa12.67□□□□□ -0.38
NUP43-201ENST00000340413 PABPN1Q86U42 306 aaKnown RBP eCLIP12.65□□□□□ -0.38
NUP43-201ENST00000340413 BAZ1BQ9UIG0 1483 aaKnown RBP12.57□□□□□ -0.4
NUP43-201ENST00000340413 CC2D2AQ9P2K1 1620 aa12.54□□□□□ -0.4
NUP43-201ENST00000340413 SUPT5HO00267 1087 aaKnown RBP12.51□□□□□ -0.41
NUP43-201ENST00000340413 PRDM2Q13029 1718 aa12.5□□□□□ -0.41
NUP43-201ENST00000340413 CCDC88BA6NC98 1476 aa12.45□□□□□ -0.42
NUP43-201ENST00000340413 CFTRP13569 1480 aa12.33□□□□□ -0.44
NUP43-201ENST00000340413 LAMC3Q9Y6N6 1575 aa12.32□□□□□ -0.44
NUP43-201ENST00000340413 BIVM-ERCC5R4GMW8 1640 aa12.24□□□□□ -0.45
NUP43-201ENST00000340413 CADPSQ9ULU8 1353 aa12.23□□□□□ -0.45
NUP43-201ENST00000340413 TOP2BQ02880 1626 aa12.18□□□□□ -0.46
NUP43-201ENST00000340413 ABCC8Q09428 1581 aa12.17□□□□□ -0.46
NUP43-201ENST00000340413 CHIC1Q5VXU3 224 aa12.16□□□□□ -0.46
NUP43-201ENST00000340413 EEA1Q15075 1411 aa12.13□□□□□ -0.47
NUP43-201ENST00000340413 WRNQ14191 1432 aaPredicted RBP eCLIP12.11□□□□□ -0.47
NUP43-201ENST00000340413 PDS5BQ9NTI5 1447 aa12.1□□□□□ -0.47
NUP43-201ENST00000340413 DNMBPQ6XZF7 1577 aa12.09□□□□□ -0.47
NUP43-201ENST00000340413 WDR97A6NE52 1622 aa12.08□□□□□ -0.47
NUP43-201ENST00000340413 SYNJ1O43426 1573 aa12.07□□□□□ -0.48
NUP43-201ENST00000340413 FANCD2Q9BXW9 1451 aa12.07□□□□□ -0.48
NUP43-201ENST00000340413 CEP164Q9UPV0 1460 aa12.05□□□□□ -0.48
NUP43-201ENST00000340413 CUX1P39880 1505 aa12.03□□□□□ -0.48
NUP43-201ENST00000340413 KIF21AQ7Z4S6 1674 aa12.01□□□□□ -0.49
NUP43-201ENST00000340413 WDR62O43379 1518 aa11.98□□□□□ -0.49
NUP43-201ENST00000340413 MRC2Q9UBG0 1479 aa11.97□□□□□ -0.49
NUP43-201ENST00000340413 TRIM41Q8WV44 630 aa11.97□□□□□ -0.49
NUP43-201ENST00000340413 TOPBP1Q92547 1522 aa11.96□□□□□ -0.49
NUP43-201ENST00000340413 KIF21BO75037 1637 aa11.95□□□□□ -0.5
NUP43-201ENST00000340413 NESP48681 1621 aa11.94□□□□□ -0.5
NUP43-201ENST00000340413 THOC2Q8NI27 1593 aaKnown RBP11.94□□□□□ -0.5
NUP43-201ENST00000340413 ABCA10Q8WWZ4 1543 aa11.92□□□□□ -0.5
NUP43-201ENST00000340413 DNAJC5BQ9UF47 199 aa11.92□□□□□ -0.5
NUP43-201ENST00000340413 URB2Q14146 1524 aaKnown RBP11.91□□□□□ -0.5
NUP43-201ENST00000340413 ERICH3Q5RHP9 1530 aa11.9□□□□□ -0.5
NUP43-201ENST00000340413 FGD5Q6ZNL6 1462 aa11.89□□□□□ -0.51
NUP43-201ENST00000340413 CUL7Q14999 1698 aa11.87□□□□□ -0.51
NUP43-201ENST00000340413 TARBP1Q13395 1621 aaKnown RBP11.87□□□□□ -0.51
NUP43-201ENST00000340413 ABCA5Q8WWZ7 1642 aa11.87□□□□□ -0.51
NUP43-201ENST00000340413 POLA1P09884 1462 aaPredicted RBP11.86□□□□□ -0.51
NUP43-201ENST00000340413 KIF27Q86VH2 1401 aa11.86□□□□□ -0.51
NUP43-201ENST00000340413 IFT140Q96RY7 1462 aa11.84□□□□□ -0.51
NUP43-201ENST00000340413 PRXQ9BXM0 1461 aa11.8□□□□□ -0.52
NUP43-201ENST00000340413 GOLGA3Q08378 1498 aa11.79□□□□□ -0.52
NUP43-201ENST00000340413 ERCC6Q03468 1493 aa11.78□□□□□ -0.52
NUP43-201ENST00000340413 SOGA1O94964 1423 aa11.78□□□□□ -0.52
NUP43-201ENST00000340413 PBRM1Q86U86 1689 aa11.77□□□□□ -0.53
NUP43-201ENST00000340413 CUX2O14529 1486 aa11.76□□□□□ -0.53
NUP43-201ENST00000340413 CSRNP3Q8WYN3 585 aa11.74□□□□□ -0.53
NUP43-201ENST00000340413 TNIKQ9UKE5 1360 aa11.73□□□□□ -0.53
NUP43-201ENST00000340413 GAPVD1Q14C86 1478 aa11.7□□□□□ -0.54
NUP43-201ENST00000340413 ADAMTS12P58397 1594 aa11.69□□□□□ -0.54
NUP43-201ENST00000340413 RUSC2Q8N2Y8 1516 aa11.69□□□□□ -0.54
NUP43-201ENST00000340413 RAPGEF2Q9Y4G8 1499 aa11.69□□□□□ -0.54
NUP43-201ENST00000340413 GRIN2BQ13224 1484 aa11.69□□□□□ -0.54
NUP43-201ENST00000340413 CTTNBP2Q8WZ74 1663 aa11.68□□□□□ -0.54
NUP43-201ENST00000340413 IGF1RP08069 1367 aa11.68□□□□□ -0.54
NUP43-201ENST00000340413 EIF4G3O43432 1585 aaKnown RBP11.67□□□□□ -0.54
NUP43-201ENST00000340413 MAGI1Q96QZ7 1491 aaPredicted RBP11.67□□□□□ -0.54
NUP43-201ENST00000340413 RAD54L2Q9Y4B4 1467 aa11.67□□□□□ -0.54
NUP43-201ENST00000340413 FHAD1B1AJZ9 1412 aa11.64□□□□□ -0.55
NUP43-201ENST00000340413 EFCAB5A4FU69 1503 aa11.62□□□□□ -0.55
NUP43-201ENST00000340413 CARMIL1Q5VZK9 1371 aa11.61□□□□□ -0.55
NUP43-201ENST00000340413 SYNJ2O15056 1496 aa11.56□□□□□ -0.56
NUP43-201ENST00000340413 SAMD9Q5K651 1589 aa11.55□□□□□ -0.56
NUP43-201ENST00000340413 CEP162Q5TB80 1403 aa11.55□□□□□ -0.56
NUP43-201ENST00000340413 ZNF608Q9ULD9 1512 aaPredicted RBP11.52□□□□□ -0.56
NUP43-201ENST00000340413 UGGT2Q9NYU1 1516 aa11.52□□□□□ -0.57
NUP43-201ENST00000340413 GRIN2AQ12879 1464 aa11.51□□□□□ -0.57
NUP43-201ENST00000340413 MAP3K1Q13233 1512 aa11.51□□□□□ -0.57
NUP43-201ENST00000340413 SNAPC4Q5SXM2 1469 aa11.51□□□□□ -0.57
NUP43-201ENST00000340413 AQRO60306 1485 aaKnown RBP eCLIP11.5□□□□□ -0.578e-7■■■□□ 16.1
NUP43-201ENST00000340413 TDRD9Q8NDG6 1382 aaKnown RBP11.5□□□□□ -0.57
NUP43-201ENST00000340413 NUP160Q12769 1436 aa11.5□□□□□ -0.57
NUP43-201ENST00000340413 IQGAP2Q13576 1575 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms