RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 NISCHQ9Y2I1 1504 aa33.27■■■□□ 2.92
TPM3-205ENST00000328159 CCDC180Q9P1Z9 1646 aa28.9■■■□□ 2.22
TPM3-205ENST00000328159 ZCCHC6Q5VYS8 1495 aaKnown RBP28■■■□□ 2.07
TPM3-205ENST00000328159 DCAF1Q9Y4B6 1507 aa27.49■■□□□ 1.99
TPM3-205ENST00000328159 DCAF8L2P0C7V8 631 aa27.42■■□□□ 1.98
TPM3-205ENST00000328159 SHROOM4Q9ULL8 1493 aa27.36■■□□□ 1.97
TPM3-205ENST00000328159 ABCC9O60706 1549 aa27.12■■□□□ 1.93
TPM3-205ENST00000328159 MYO15BQ96JP2 1530 aa27.06■■□□□ 1.92
TPM3-205ENST00000328159 NACADO15069 1562 aa26.84■■□□□ 1.89
TPM3-205ENST00000328159 SCRIBQ14160 1630 aa26.64■■□□□ 1.85
TPM3-205ENST00000328159 RB1CC1Q8TDY2 1594 aa26.56■■□□□ 1.84
TPM3-205ENST00000328159 SUPT5HO00267 1087 aaKnown RBP26.45■■□□□ 1.82
TPM3-205ENST00000328159 UNC13AQ9UPW8 1703 aa26.08■■□□□ 1.77
TPM3-205ENST00000328159 RSF1Q96T23 1441 aaPredicted RBP25.91■■□□□ 1.74
TPM3-205ENST00000328159 CECR2Q9BXF3 1484 aa25.85■■□□□ 1.73
TPM3-205ENST00000328159 BICRAQ9NZM4 1560 aa25.77■■□□□ 1.72
TPM3-205ENST00000328159 MROH2BQ7Z745 1585 aa25.73■■□□□ 1.71
TPM3-205ENST00000328159 BAZ1AQ9NRL2 1556 aaPredicted RBP25.66■■□□□ 1.7
TPM3-205ENST00000328159 PABPN1Q86U42 306 aaKnown RBP eCLIP25.62■■□□□ 1.69
TPM3-205ENST00000328159 WIZO95785 1651 aa25.55■■□□□ 1.68
TPM3-205ENST00000328159 SMARCA4P51532 1647 aa25.54■■□□□ 1.68
TPM3-205ENST00000328159 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
TPM3-205ENST00000328159 TOP2AP11388 1531 aaKnown RBP25.27■■□□□ 1.64
TPM3-205ENST00000328159 PEG3Q9GZU2 1588 aa25.19■■□□□ 1.62
TPM3-205ENST00000328159 SMARCA2P51531 1590 aa25.06■■□□□ 1.6
TPM3-205ENST00000328159 ATAD2BQ9ULI0 1458 aa25.04■■□□□ 1.6
TPM3-205ENST00000328159 CCDC88BA6NC98 1476 aa25.02■■□□□ 1.6
TPM3-205ENST00000328159 EIF4G1Q04637 1599 aaKnown RBP24.96■■□□□ 1.59
TPM3-205ENST00000328159 BAZ1BQ9UIG0 1483 aaKnown RBP24.92■■□□□ 1.58
TPM3-205ENST00000328159 TRIM41Q8WV44 630 aa24.83■■□□□ 1.57
TPM3-205ENST00000328159 NCAPD3P42695 1498 aa24.77■■□□□ 1.56
TPM3-205ENST00000328159 HMGXB3Q12766 1538 aa24.75■■□□□ 1.55
TPM3-205ENST00000328159 ABCC8Q09428 1581 aa24.6■■□□□ 1.53
TPM3-205ENST00000328159 CC2D2AQ9P2K1 1620 aa24.54■■□□□ 1.52
TPM3-205ENST00000328159 LOC105371045A0A1W2PR82 267 aa24.49■■□□□ 1.51
TPM3-205ENST00000328159 FAM9AQ8IZU1 332 aaPredicted RBP24.42■■□□□ 1.5
TPM3-205ENST00000328159 WRNQ14191 1432 aaPredicted RBP eCLIP24.38■■□□□ 1.499e-7■■■□□ 18.8
TPM3-205ENST00000328159 SYNJ1O43426 1573 aa24.29■■□□□ 1.48
TPM3-205ENST00000328159 CFTRP13569 1480 aa24.29■■□□□ 1.48
TPM3-205ENST00000328159 PRDM2Q13029 1718 aa24.23■■□□□ 1.47
TPM3-205ENST00000328159 SOGA1O94964 1423 aa24.18■■□□□ 1.46
TPM3-205ENST00000328159 TOP2BQ02880 1626 aa24.16■■□□□ 1.46
TPM3-205ENST00000328159 EEA1Q15075 1411 aa24.15■■□□□ 1.46
TPM3-205ENST00000328159 CADPSQ9ULU8 1353 aa24.15■■□□□ 1.46
TPM3-205ENST00000328159 BIVM-ERCC5R4GMW8 1640 aa24.14■■□□□ 1.46
TPM3-205ENST00000328159 RUSC2Q8N2Y8 1516 aa24.08■■□□□ 1.45
TPM3-205ENST00000328159 EHMT2Q96KQ7 1210 aa24.07■■□□□ 1.44
TPM3-205ENST00000328159 CUX1P39880 1505 aa24.04■■□□□ 1.44
TPM3-205ENST00000328159 CSRNP3Q8WYN3 585 aa24.01■■□□□ 1.43
TPM3-205ENST00000328159 FANCD2Q9BXW9 1451 aa23.9■■□□□ 1.42
TPM3-205ENST00000328159 NESP48681 1621 aa23.89■■□□□ 1.42
TPM3-205ENST00000328159 LAMC3Q9Y6N6 1575 aa23.89■■□□□ 1.41
TPM3-205ENST00000328159 KIF21BO75037 1637 aa23.86■■□□□ 1.41
TPM3-205ENST00000328159 GOLGA3Q08378 1498 aa23.86■■□□□ 1.41
TPM3-205ENST00000328159 DNAJC5BQ9UF47 199 aa23.84■■□□□ 1.41
TPM3-205ENST00000328159 CEP164Q9UPV0 1460 aa23.83■■□□□ 1.41
TPM3-205ENST00000328159 TNIKQ9UKE5 1360 aa23.83■■□□□ 1.4
TPM3-205ENST00000328159 DNMBPQ6XZF7 1577 aa23.74■■□□□ 1.39
TPM3-205ENST00000328159 KIF27Q86VH2 1401 aa23.74■■□□□ 1.39
TPM3-205ENST00000328159 UBTFP17480 764 aaKnown RBP23.74■■□□□ 1.39
TPM3-205ENST00000328159 FGD5Q6ZNL6 1462 aa23.74■■□□□ 1.39
TPM3-205ENST00000328159 CEP162Q5TB80 1403 aa23.73■■□□□ 1.39
TPM3-205ENST00000328159 PDS5BQ9NTI5 1447 aa23.68■■□□□ 1.38
TPM3-205ENST00000328159 TOPBP1Q92547 1522 aa23.68■■□□□ 1.38
TPM3-205ENST00000328159 RAPGEF2Q9Y4G8 1499 aa23.67■■□□□ 1.38
TPM3-205ENST00000328159 PRXQ9BXM0 1461 aa23.64■■□□□ 1.38
TPM3-205ENST00000328159 PCGF6Q9BYE7 350 aa23.64■■□□□ 1.37
TPM3-205ENST00000328159 ERICH3Q5RHP9 1530 aa23.64■■□□□ 1.37
TPM3-205ENST00000328159 CUX2O14529 1486 aa23.63■■□□□ 1.37
TPM3-205ENST00000328159 KIF21AQ7Z4S6 1674 aa23.62■■□□□ 1.37
TPM3-205ENST00000328159 URB2Q14146 1524 aaKnown RBP23.6■■□□□ 1.37
TPM3-205ENST00000328159 POLA1P09884 1462 aaPredicted RBP23.58■■□□□ 1.37
TPM3-205ENST00000328159 TRIM26Q12899 539 aaPredicted RBP23.56■■□□□ 1.36
TPM3-205ENST00000328159 RAD54L2Q9Y4B4 1467 aa23.52■■□□□ 1.36
TPM3-205ENST00000328159 ABCA10Q8WWZ4 1543 aa23.52■■□□□ 1.36
TPM3-205ENST00000328159 IGF1RP08069 1367 aa23.5■■□□□ 1.35
TPM3-205ENST00000328159 CLIP1P30622 1438 aa23.48■■□□□ 1.35
TPM3-205ENST00000328159 WDR97A6NE52 1622 aa23.45■■□□□ 1.34
TPM3-205ENST00000328159 CARMIL1Q5VZK9 1371 aa23.39■■□□□ 1.34
TPM3-205ENST00000328159 MRC2Q9UBG0 1479 aa23.39■■□□□ 1.33
TPM3-205ENST00000328159 PPARGC1BQ86YN6 1023 aaKnown RBP23.34■■□□□ 1.33
TPM3-205ENST00000328159 ABCA5Q8WWZ7 1642 aa23.33■■□□□ 1.32
TPM3-205ENST00000328159 VPS8Q8N3P4 1428 aa23.31■■□□□ 1.32
TPM3-205ENST00000328159 TARBP1Q13395 1621 aaKnown RBP23.31■■□□□ 1.32
TPM3-205ENST00000328159 CUL7Q14999 1698 aa23.31■■□□□ 1.32
TPM3-205ENST00000328159 RANGAP1P46060 587 aaPredicted RBP23.3■■□□□ 1.32
TPM3-205ENST00000328159 TDRD9Q8NDG6 1382 aaKnown RBP23.26■■□□□ 1.31
TPM3-205ENST00000328159 WDR62O43379 1518 aa23.25■■□□□ 1.31
TPM3-205ENST00000328159 GAPVD1Q14C86 1478 aa23.25■■□□□ 1.31
TPM3-205ENST00000328159 ARAP1Q96P48 1450 aa23.23■■□□□ 1.31
TPM3-205ENST00000328159 ERCC6Q03468 1493 aa23.2■■□□□ 1.31
TPM3-205ENST00000328159 HRCP23327 699 aa23.17■■□□□ 1.3
TPM3-205ENST00000328159 ARHGAP35Q9NRY4 1499 aa23.17■■□□□ 1.3
TPM3-205ENST00000328159 THOC2Q8NI27 1593 aaKnown RBP23.14■■□□□ 1.29
TPM3-205ENST00000328159 IFT140Q96RY7 1462 aa23.14■■□□□ 1.29
TPM3-205ENST00000328159 PBRM1Q86U86 1689 aa23.13■■□□□ 1.29
TPM3-205ENST00000328159 CTTNBP2Q8WZ74 1663 aa23.12■■□□□ 1.29
TPM3-205ENST00000328159 TTBK1Q5TCY1 1321 aaPredicted RBP23.11■■□□□ 1.29
TPM3-205ENST00000328159 APLP2Q06481 763 aa23.08■■□□□ 1.29
TPM3-205ENST00000328159 AQRO60306 1485 aaKnown RBP eCLIP23.07■■□□□ 1.284e-7■■□□□ 12.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms