RNA–Protein interactions for RNA: ENST00000318842.11

RPGR-201, Transcript of retinitis pigmentosa GTPase regulator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RPGR, Length 3,108 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPGR-201ENST00000318842 NISCHQ9Y2I1 1504 aa18.45■□□□□ 0.54
RPGR-201ENST00000318842 SHROOM4Q9ULL8 1493 aa16.99■□□□□ 0.31
RPGR-201ENST00000318842 SUPT5HO00267 1087 aaKnown RBP16.78■□□□□ 0.28
RPGR-201ENST00000318842 PPARGC1BQ86YN6 1023 aaKnown RBP16.43■□□□□ 0.22
RPGR-201ENST00000318842 PCGF6Q9BYE7 350 aa16.33■□□□□ 0.2
RPGR-201ENST00000318842 MYO15BQ96JP2 1530 aa16.28■□□□□ 0.2
RPGR-201ENST00000318842 DCAF8L2P0C7V8 631 aa16.24■□□□□ 0.19
RPGR-201ENST00000318842 HRCP23327 699 aa16.21■□□□□ 0.19
RPGR-201ENST00000318842 CHIC1Q5VXU3 224 aa16.1■□□□□ 0.17
RPGR-201ENST00000318842 LOC105371045A0A1W2PR82 267 aa16.05■□□□□ 0.16
RPGR-201ENST00000318842 EHMT2Q96KQ7 1210 aa15.92■□□□□ 0.14
RPGR-201ENST00000318842 FAM9AQ8IZU1 332 aaPredicted RBP15.66■□□□□ 0.1
RPGR-201ENST00000318842 ZCCHC6Q5VYS8 1495 aaKnown RBP15.61■□□□□ 0.09
RPGR-201ENST00000318842 TRIM26Q12899 539 aaPredicted RBP15.46■□□□□ 0.07
RPGR-201ENST00000318842 SCAF1Q9H7N4 1312 aaKnown RBP15.45■□□□□ 0.06
RPGR-201ENST00000318842 TTBK1Q5TCY1 1321 aaPredicted RBP15.42■□□□□ 0.06
RPGR-201ENST00000318842 DCAF1Q9Y4B6 1507 aa15.35■□□□□ 0.05
RPGR-201ENST00000318842 TRIM41Q8WV44 630 aa15.26■□□□□ 0.03
RPGR-201ENST00000318842 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.25■□□□□ 0.03
RPGR-201ENST00000318842 PELP1Q8IZL8 1130 aaKnown RBP15.14■□□□□ 0.01
RPGR-201ENST00000318842 CCDC180Q9P1Z9 1646 aa15.12■□□□□ 0.01
RPGR-201ENST00000318842 NEUROD1Q13562 356 aa15.12■□□□□ 0.01
RPGR-201ENST00000318842 CCER1Q8TC90 406 aaPredicted RBP15.04■□□□□ -0
RPGR-201ENST00000318842 YTHDC1Q96MU7 727 aaKnown RBP15.01□□□□□ -0.01
RPGR-201ENST00000318842 GTF3C3Q9Y5Q9 886 aa15□□□□□ -0.01
RPGR-201ENST00000318842 ZEB1P37275 1124 aaPredicted RBP14.99□□□□□ -0.01
RPGR-201ENST00000318842 RB1CC1Q8TDY2 1594 aa14.96□□□□□ -0.02
RPGR-201ENST00000318842 SCRIBQ14160 1630 aa14.94□□□□□ -0.02
RPGR-201ENST00000318842 RSF1Q96T23 1441 aaPredicted RBP14.94□□□□□ -0.02
RPGR-201ENST00000318842 ACIN1Q9UKV3 1341 aaKnown RBP14.93□□□□□ -0.02
RPGR-201ENST00000318842 DIEXFQ68CQ4 756 aaKnown RBP14.87□□□□□ -0.03
RPGR-201ENST00000318842 MYT1Q01538 1121 aa14.81□□□□□ -0.04
RPGR-201ENST00000318842 ABCC9O60706 1549 aa14.79□□□□□ -0.04
RPGR-201ENST00000318842 CECR2Q9BXF3 1484 aa14.77□□□□□ -0.04
RPGR-201ENST00000318842 RANGAP1P46060 587 aaPredicted RBP14.76□□□□□ -0.05
RPGR-201ENST00000318842 HNRNPUL2Q1KMD3 747 aaKnown RBP14.68□□□□□ -0.06
RPGR-201ENST00000318842 CENPBP07199 599 aaPredicted RBP14.64□□□□□ -0.07
RPGR-201ENST00000318842 MIER1Q8N108 512 aa14.64□□□□□ -0.07
RPGR-201ENST00000318842 MROH2BQ7Z745 1585 aa14.62□□□□□ -0.07
RPGR-201ENST00000318842 UBTFP17480 764 aaKnown RBP14.59□□□□□ -0.07
RPGR-201ENST00000318842 ABCC8Q09428 1581 aa14.57□□□□□ -0.08
RPGR-201ENST00000318842 WIZO95785 1651 aa14.57□□□□□ -0.08
RPGR-201ENST00000318842 SOGA1O94964 1423 aa14.52□□□□□ -0.08
RPGR-201ENST00000318842 CCDC88BA6NC98 1476 aa14.52□□□□□ -0.09
RPGR-201ENST00000318842 ZNF316A6NFI3 1004 aaPredicted RBP14.52□□□□□ -0.09
RPGR-201ENST00000318842 RUSC2Q8N2Y8 1516 aa14.5□□□□□ -0.09
RPGR-201ENST00000318842 CEP162Q5TB80 1403 aa14.46□□□□□ -0.09
RPGR-201ENST00000318842 BCANQ96GW7 911 aa14.33□□□□□ -0.12
RPGR-201ENST00000318842 CSRNP3Q8WYN3 585 aa14.32□□□□□ -0.12
RPGR-201ENST00000318842 KCNH8Q96L42 1107 aa14.32□□□□□ -0.12
RPGR-201ENST00000318842 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
RPGR-201ENST00000318842 ITGAEP38570 1179 aa14.29□□□□□ -0.12
RPGR-201ENST00000318842 SUPT16HQ9Y5B9 1047 aaKnown RBP14.21□□□□□ -0.14
RPGR-201ENST00000318842 TNIKQ9UKE5 1360 aa14.19□□□□□ -0.14
RPGR-201ENST00000318842 EIF4G1Q04637 1599 aaKnown RBP14.19□□□□□ -0.14
RPGR-201ENST00000318842 WRNQ14191 1432 aaPredicted RBP eCLIP14.19□□□□□ -0.14
RPGR-201ENST00000318842 HIRIP3Q9BW71 556 aaPredicted RBP14.17□□□□□ -0.14
RPGR-201ENST00000318842 BAZ1AQ9NRL2 1556 aaPredicted RBP14.16□□□□□ -0.14
RPGR-201ENST00000318842 APLP2Q06481 763 aa14.15□□□□□ -0.14
RPGR-201ENST00000318842 KANK4Q5T7N3 995 aaPredicted RBP14.12□□□□□ -0.15
RPGR-201ENST00000318842 NACADO15069 1562 aa14.11□□□□□ -0.15
RPGR-201ENST00000318842 TSHZ2Q9NRE2 1034 aa14.1□□□□□ -0.15
RPGR-201ENST00000318842 CLIP1P30622 1438 aa14.09□□□□□ -0.15
RPGR-201ENST00000318842 SMARCA2P51531 1590 aa14.08□□□□□ -0.16
RPGR-201ENST00000318842 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
RPGR-201ENST00000318842 RAPGEF2Q9Y4G8 1499 aa14.04□□□□□ -0.16
RPGR-201ENST00000318842 TOP2AP11388 1531 aaKnown RBP14.02□□□□□ -0.17
RPGR-201ENST00000318842 TRIM52Q96A61 297 aa13.99□□□□□ -0.17
RPGR-201ENST00000318842 DHX57Q6P158 1386 aaKnown RBP13.99□□□□□ -0.17
RPGR-201ENST00000318842 FKBP8Q14318 412 aa13.99□□□□□ -0.17
RPGR-201ENST00000318842 DDX10Q13206 875 aaKnown RBP13.99□□□□□ -0.17
RPGR-201ENST00000318842 SYNJ1O43426 1573 aa13.97□□□□□ -0.17
RPGR-201ENST00000318842 SIN3AQ96ST3 1273 aa13.96□□□□□ -0.17
RPGR-201ENST00000318842 SMARCA4P51532 1647 aa13.96□□□□□ -0.18
RPGR-201ENST00000318842 IRX6P78412 446 aaPredicted RBP13.95□□□□□ -0.18
RPGR-201ENST00000318842 VPS8Q8N3P4 1428 aa13.94□□□□□ -0.18
RPGR-201ENST00000318842 ATP1B4Q9UN42 357 aaPredicted RBP13.92□□□□□ -0.18
RPGR-201ENST00000318842 CEP164Q9UPV0 1460 aa13.89□□□□□ -0.19
RPGR-201ENST00000318842 P3H3Q8IVL6 736 aa13.89□□□□□ -0.19
RPGR-201ENST00000318842 ANP32EQ9BTT0 268 aa13.89□□□□□ -0.19
RPGR-201ENST00000318842 KIF21BO75037 1637 aa13.88□□□□□ -0.19
RPGR-201ENST00000318842 BCL11AQ9H165 835 aa13.87□□□□□ -0.19
RPGR-201ENST00000318842 SENP3-EIF4A1A0A087X0R7 540 aa13.84□□□□□ -0.19
RPGR-201ENST00000318842 EEA1Q15075 1411 aa13.84□□□□□ -0.19
RPGR-201ENST00000318842 FAM50AQ14320 339 aaKnown RBP13.83□□□□□ -0.2
RPGR-201ENST00000318842 CNGB1Q14028 1251 aaPredicted RBP13.81□□□□□ -0.2
RPGR-201ENST00000318842 ARAP1Q96P48 1450 aa13.79□□□□□ -0.2
RPGR-201ENST00000318842 RBM19Q9Y4C8 960 aaKnown RBP13.78□□□□□ -0.2
RPGR-201ENST00000318842 RAB3GAP2Q9H2M9 1393 aa13.76□□□□□ -0.21
RPGR-201ENST00000318842 UNC13AQ9UPW8 1703 aa13.75□□□□□ -0.21
RPGR-201ENST00000318842 MSH5O43196 834 aa13.74□□□□□ -0.21
RPGR-201ENST00000318842 CCNB3Q8WWL7 1395 aa13.7□□□□□ -0.22
RPGR-201ENST00000318842 WDR97A6NE52 1622 aa13.7□□□□□ -0.22
RPGR-201ENST00000318842 PRKCSHP14314 528 aaPredicted RBP13.69□□□□□ -0.22
RPGR-201ENST00000318842 BAZ1BQ9UIG0 1483 aaKnown RBP13.66□□□□□ -0.22
RPGR-201ENST00000318842 NEFLP07196 543 aa13.66□□□□□ -0.22
RPGR-201ENST00000318842 MAPKBP1O60336 1514 aa13.65□□□□□ -0.22
RPGR-201ENST00000318842 PPP1R15AO75807 674 aaPredicted RBP13.63□□□□□ -0.23
RPGR-201ENST00000318842 HNRNPUQ00839 825 aaKnown RBP eCLIP13.62□□□□□ -0.23
RPGR-201ENST00000318842 PHLDB1Q86UU1 1377 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms