RNA–Protein interactions for RNA: ENST00000315266.9

GPHN-201, Transcript of gephyrin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene GPHN, Length 4,193 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-201ENST00000315266 NISCHQ9Y2I1 1504 aa20.48■□□□□ 0.87
GPHN-201ENST00000315266 DCAF8L2P0C7V8 631 aa18.41■□□□□ 0.54
GPHN-201ENST00000315266 CCDC180Q9P1Z9 1646 aa17.7■□□□□ 0.42
GPHN-201ENST00000315266 SHROOM4Q9ULL8 1493 aa17.55■□□□□ 0.4
GPHN-201ENST00000315266 SUPT5HO00267 1087 aaKnown RBP17.43■□□□□ 0.38
GPHN-201ENST00000315266 ABCC9O60706 1549 aa17.15■□□□□ 0.34
GPHN-201ENST00000315266 ZCCHC6Q5VYS8 1495 aaKnown RBP17.14■□□□□ 0.33
GPHN-201ENST00000315266 EHMT2Q96KQ7 1210 aa16.91■□□□□ 0.3
GPHN-201ENST00000315266 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
GPHN-201ENST00000315266 NACADO15069 1562 aa16.65■□□□□ 0.26
GPHN-201ENST00000315266 RB1CC1Q8TDY2 1594 aa16.58■□□□□ 0.25
GPHN-201ENST00000315266 MYO15BQ96JP2 1530 aa16.56■□□□□ 0.24
GPHN-201ENST00000315266 SCRIBQ14160 1630 aa16.54■□□□□ 0.24
GPHN-201ENST00000315266 FAM9AQ8IZU1 332 aaPredicted RBP16.43■□□□□ 0.22
GPHN-201ENST00000315266 PABPN1Q86U42 306 aaKnown RBP eCLIP16.32■□□□□ 0.2
GPHN-201ENST00000315266 TTBK1Q5TCY1 1321 aaPredicted RBP16.17■□□□□ 0.18
GPHN-201ENST00000315266 RANGAP1P46060 587 aaPredicted RBP16.08■□□□□ 0.16
GPHN-201ENST00000315266 PCGF6Q9BYE7 350 aa15.98■□□□□ 0.15
GPHN-201ENST00000315266 RSF1Q96T23 1441 aaPredicted RBP15.95■□□□□ 0.14
GPHN-201ENST00000315266 CECR2Q9BXF3 1484 aa15.94■□□□□ 0.14
GPHN-201ENST00000315266 TRIM41Q8WV44 630 aa15.91■□□□□ 0.14
GPHN-201ENST00000315266 BAZ1AQ9NRL2 1556 aaPredicted RBP15.9■□□□□ 0.14
GPHN-201ENST00000315266 PPARGC1BQ86YN6 1023 aaKnown RBP15.87■□□□□ 0.13
GPHN-201ENST00000315266 UNC13AQ9UPW8 1703 aa15.84■□□□□ 0.13
GPHN-201ENST00000315266 MROH2BQ7Z745 1585 aa15.82■□□□□ 0.12
GPHN-201ENST00000315266 LOC105371045A0A1W2PR82 267 aa15.82■□□□□ 0.12
GPHN-201ENST00000315266 BICRAQ9NZM4 1560 aa15.77■□□□□ 0.11
GPHN-201ENST00000315266 CHIC1Q5VXU3 224 aa15.71■□□□□ 0.11
GPHN-201ENST00000315266 SMARCA4P51532 1647 aa15.7■□□□□ 0.1
GPHN-201ENST00000315266 WIZO95785 1651 aa15.67■□□□□ 0.1
GPHN-201ENST00000315266 HRCP23327 699 aa15.65■□□□□ 0.1
GPHN-201ENST00000315266 BAZ1BQ9UIG0 1483 aaKnown RBP15.61■□□□□ 0.09
GPHN-201ENST00000315266 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
GPHN-201ENST00000315266 SMARCA2P51531 1590 aa15.58■□□□□ 0.09
GPHN-201ENST00000315266 ATP1B4Q9UN42 357 aaPredicted RBP15.56■□□□□ 0.08
GPHN-201ENST00000315266 TOP2AP11388 1531 aaKnown RBP15.54■□□□□ 0.08
GPHN-201ENST00000315266 ATAD2BQ9ULI0 1458 aa15.53■□□□□ 0.08
GPHN-201ENST00000315266 EIF4G1Q04637 1599 aaKnown RBP15.51■□□□□ 0.07
GPHN-201ENST00000315266 APLP2Q06481 763 aa15.49■□□□□ 0.07
GPHN-201ENST00000315266 CCDC88BA6NC98 1476 aa15.45■□□□□ 0.06
GPHN-201ENST00000315266 NCAPD3P42695 1498 aa15.36■□□□□ 0.05
GPHN-201ENST00000315266 PEG3Q9GZU2 1588 aa15.34■□□□□ 0.05
GPHN-201ENST00000315266 TRIM26Q12899 539 aaPredicted RBP15.29■□□□□ 0.04
GPHN-201ENST00000315266 CC2D2AQ9P2K1 1620 aa15.28■□□□□ 0.04
GPHN-201ENST00000315266 HMGXB3Q12766 1538 aa15.28■□□□□ 0.04
GPHN-201ENST00000315266 ITGAEP38570 1179 aa15.21■□□□□ 0.03
GPHN-201ENST00000315266 CCER1Q8TC90 406 aaPredicted RBP15.21■□□□□ 0.03
GPHN-201ENST00000315266 WRNQ14191 1432 aaPredicted RBP eCLIP15.19■□□□□ 0.02
GPHN-201ENST00000315266 ABCC8Q09428 1581 aa15.14■□□□□ 0.01
GPHN-201ENST00000315266 ZEB1P37275 1124 aaPredicted RBP15.14■□□□□ 0.01
GPHN-201ENST00000315266 CADPSQ9ULU8 1353 aa15.13■□□□□ 0.01
GPHN-201ENST00000315266 HNRNPUL2Q1KMD3 747 aaKnown RBP15.1■□□□□ 0.01
GPHN-201ENST00000315266 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
GPHN-201ENST00000315266 CFTRP13569 1480 aa15.03■□□□□ -0
GPHN-201ENST00000315266 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15□□□□□ -0.01
GPHN-201ENST00000315266 PDS5BQ9NTI5 1447 aa14.99□□□□□ -0.01
GPHN-201ENST00000315266 EEA1Q15075 1411 aa14.99□□□□□ -0.01
GPHN-201ENST00000315266 FANCD2Q9BXW9 1451 aa14.95□□□□□ -0.02
GPHN-201ENST00000315266 P3H3Q8IVL6 736 aa14.95□□□□□ -0.02
GPHN-201ENST00000315266 DNAJC5BQ9UF47 199 aa14.95□□□□□ -0.02
GPHN-201ENST00000315266 ARID3CA6NKF2 412 aa14.94□□□□□ -0.02
GPHN-201ENST00000315266 SOGA1O94964 1423 aa14.92□□□□□ -0.02
GPHN-201ENST00000315266 CEP164Q9UPV0 1460 aa14.91□□□□□ -0.02
GPHN-201ENST00000315266 NESP48681 1621 aa14.9□□□□□ -0.02
GPHN-201ENST00000315266 FBLN2P98095 1184 aa14.89□□□□□ -0.03
GPHN-201ENST00000315266 ERCC6Q03468 1493 aa14.89□□□□□ -0.03
GPHN-201ENST00000315266 KIF27Q86VH2 1401 aa14.88□□□□□ -0.03
GPHN-201ENST00000315266 SYNJ1O43426 1573 aa14.86□□□□□ -0.03
GPHN-201ENST00000315266 LAMC3Q9Y6N6 1575 aa14.85□□□□□ -0.03
GPHN-201ENST00000315266 YTHDC1Q96MU7 727 aaKnown RBP14.83□□□□□ -0.03
GPHN-201ENST00000315266 TOP2BQ02880 1626 aa14.81□□□□□ -0.04
GPHN-201ENST00000315266 CUX2O14529 1486 aa14.81□□□□□ -0.04
GPHN-201ENST00000315266 GOLGA3Q08378 1498 aa14.8□□□□□ -0.04
GPHN-201ENST00000315266 CENPBP07199 599 aaPredicted RBP14.8□□□□□ -0.04
GPHN-201ENST00000315266 CNGB1Q14028 1251 aaPredicted RBP14.78□□□□□ -0.04
GPHN-201ENST00000315266 CUX1P39880 1505 aa14.78□□□□□ -0.04
GPHN-201ENST00000315266 RUSC2Q8N2Y8 1516 aa14.77□□□□□ -0.04
GPHN-201ENST00000315266 FGD5Q6ZNL6 1462 aa14.76□□□□□ -0.05
GPHN-201ENST00000315266 PELP1Q8IZL8 1130 aaKnown RBP14.74□□□□□ -0.05
GPHN-201ENST00000315266 TNIKQ9UKE5 1360 aa14.72□□□□□ -0.05
GPHN-201ENST00000315266 FAM50AQ14320 339 aaKnown RBP14.71□□□□□ -0.05
GPHN-201ENST00000315266 PRDM2Q13029 1718 aa14.71□□□□□ -0.05
GPHN-201ENST00000315266 TOPBP1Q92547 1522 aa14.7□□□□□ -0.06
GPHN-201ENST00000315266 BIVM-ERCC5R4GMW8 1640 aa14.7□□□□□ -0.06
GPHN-201ENST00000315266 DNMBPQ6XZF7 1577 aa14.7□□□□□ -0.06
GPHN-201ENST00000315266 MYT1LQ9UL68 1186 aa14.68□□□□□ -0.06
GPHN-201ENST00000315266 CEP162Q5TB80 1403 aa14.67□□□□□ -0.06
GPHN-201ENST00000315266 CARMIL1Q5VZK9 1371 aa14.67□□□□□ -0.06
GPHN-201ENST00000315266 TDRD9Q8NDG6 1382 aaKnown RBP14.66□□□□□ -0.06
GPHN-201ENST00000315266 RAD54L2Q9Y4B4 1467 aa14.66□□□□□ -0.06
GPHN-201ENST00000315266 DIEXFQ68CQ4 756 aaKnown RBP14.66□□□□□ -0.06
GPHN-201ENST00000315266 MRC2Q9UBG0 1479 aa14.66□□□□□ -0.06
GPHN-201ENST00000315266 POLA1P09884 1462 aaPredicted RBP14.64□□□□□ -0.07
GPHN-201ENST00000315266 CLIP1P30622 1438 aa14.63□□□□□ -0.07
GPHN-201ENST00000315266 POLR3GLQ9BT43 218 aa14.61□□□□□ -0.07
GPHN-201ENST00000315266 RAPGEF2Q9Y4G8 1499 aa14.61□□□□□ -0.07
GPHN-201ENST00000315266 URB2Q14146 1524 aaKnown RBP14.6□□□□□ -0.07
GPHN-201ENST00000315266 IGF1RP08069 1367 aa14.58□□□□□ -0.08
GPHN-201ENST00000315266 NEUROD1Q13562 356 aa14.57□□□□□ -0.08
GPHN-201ENST00000315266 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms