RNA–Protein interactions for RNA: ENST00000310421.4

VCPIP1-201, Transcript of valosin containing protein interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VCPIP1, Length 9,942 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCPIP1-201ENST00000310421 DCAF8L2P0C7V8 631 aa19.18■□□□□ 0.66
VCPIP1-201ENST00000310421 NISCHQ9Y2I1 1504 aa18.58■□□□□ 0.57
VCPIP1-201ENST00000310421 PELP1Q8IZL8 1130 aaKnown RBP18.13■□□□□ 0.49
VCPIP1-201ENST00000310421 SUPT5HO00267 1087 aaKnown RBP18.06■□□□□ 0.48
VCPIP1-201ENST00000310421 FAM9AQ8IZU1 332 aaPredicted RBP17.95■□□□□ 0.46
VCPIP1-201ENST00000310421 APLP2Q06481 763 aa17.84■□□□□ 0.45
VCPIP1-201ENST00000310421 SHROOM4Q9ULL8 1493 aa17.75■□□□□ 0.43
VCPIP1-201ENST00000310421 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
VCPIP1-201ENST00000310421 CCER1Q8TC90 406 aaPredicted RBP17.25■□□□□ 0.35
VCPIP1-201ENST00000310421 ZEB1P37275 1124 aaPredicted RBP17.13■□□□□ 0.33
VCPIP1-201ENST00000310421 CENPBP07199 599 aaPredicted RBP17.08■□□□□ 0.32
VCPIP1-201ENST00000310421 ERICH6Q7L0X2 663 aa17.04■□□□□ 0.32
VCPIP1-201ENST00000310421 TRIM41Q8WV44 630 aa16.96■□□□□ 0.31
VCPIP1-201ENST00000310421 ATP1B4Q9UN42 357 aaPredicted RBP16.89■□□□□ 0.29
VCPIP1-201ENST00000310421 TTBK1Q5TCY1 1321 aaPredicted RBP16.88■□□□□ 0.29
VCPIP1-201ENST00000310421 NEFLP07196 543 aa16.87■□□□□ 0.29
VCPIP1-201ENST00000310421 PCGF6Q9BYE7 350 aa16.87■□□□□ 0.29
VCPIP1-201ENST00000310421 UBTFP17480 764 aaKnown RBP16.85■□□□□ 0.29
VCPIP1-201ENST00000310421 RANGAP1P46060 587 aaPredicted RBP16.81■□□□□ 0.28
VCPIP1-201ENST00000310421 MYT1Q01538 1121 aa16.76■□□□□ 0.27
VCPIP1-201ENST00000310421 DAXXQ9UER7 740 aaPredicted RBP16.53■□□□□ 0.24
VCPIP1-201ENST00000310421 MYT1LQ9UL68 1186 aa16.47■□□□□ 0.23
VCPIP1-201ENST00000310421 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.4■□□□□ 0.22
VCPIP1-201ENST00000310421 HNRNPUL2Q1KMD3 747 aaKnown RBP16.4■□□□□ 0.22
VCPIP1-201ENST00000310421 YTHDC1Q96MU7 727 aaKnown RBP16.38■□□□□ 0.21
VCPIP1-201ENST00000310421 TRIM26Q12899 539 aaPredicted RBP16.33■□□□□ 0.2
VCPIP1-201ENST00000310421 POLR3GLQ9BT43 218 aa16.18■□□□□ 0.18
VCPIP1-201ENST00000310421 ITGAEP38570 1179 aa16.13■□□□□ 0.17
VCPIP1-201ENST00000310421 SLC4A1APQ9BWU0 796 aaKnown RBP16.1■□□□□ 0.17
VCPIP1-201ENST00000310421 ZNF316A6NFI3 1004 aaPredicted RBP16.09■□□□□ 0.17
VCPIP1-201ENST00000310421 CHIC1Q5VXU3 224 aa16.01■□□□□ 0.15
VCPIP1-201ENST00000310421 PPARGC1BQ86YN6 1023 aaKnown RBP16.01■□□□□ 0.15
VCPIP1-201ENST00000310421 CLSPNQ9HAW4 1339 aa16■□□□□ 0.15
VCPIP1-201ENST00000310421 RTL5Q5HYW3 569 aaPredicted RBP15.98■□□□□ 0.15
VCPIP1-201ENST00000310421 CCDC180Q9P1Z9 1646 aa15.96■□□□□ 0.14
VCPIP1-201ENST00000310421 ABCC9O60706 1549 aa15.95■□□□□ 0.14
VCPIP1-201ENST00000310421 HRCP23327 699 aa15.95■□□□□ 0.14
VCPIP1-201ENST00000310421 ZBTB47Q9UFB7 747 aaPredicted RBP15.91■□□□□ 0.14
VCPIP1-201ENST00000310421 FAM50AQ14320 339 aaKnown RBP15.9■□□□□ 0.14
VCPIP1-201ENST00000310421 TRIM52Q96A61 297 aa15.83■□□□□ 0.12
VCPIP1-201ENST00000310421 NEFMP07197 916 aa15.81■□□□□ 0.12
VCPIP1-201ENST00000310421 CNGB1Q14028 1251 aaPredicted RBP15.76■□□□□ 0.11
VCPIP1-201ENST00000310421 DIEXFQ68CQ4 756 aaKnown RBP15.74■□□□□ 0.11
VCPIP1-201ENST00000310421 ANP32CO43423 234 aa15.72■□□□□ 0.11
VCPIP1-201ENST00000310421 SCRIBQ14160 1630 aa15.7■□□□□ 0.1
VCPIP1-201ENST00000310421 CANXP27824 592 aaKnown RBP15.7■□□□□ 0.1
VCPIP1-201ENST00000310421 CDK11AQ9UQ88 783 aaPredicted RBP15.68■□□□□ 0.1
VCPIP1-201ENST00000310421 LOC105371045A0A1W2PR82 267 aa15.67■□□□□ 0.1
VCPIP1-201ENST00000310421 FBLN2P98095 1184 aa15.66■□□□□ 0.1
VCPIP1-201ENST00000310421 PABPN1Q86U42 306 aaKnown RBP eCLIP15.65■□□□□ 0.1
VCPIP1-201ENST00000310421 ZNF326Q5BKZ1 582 aaKnown RBP15.64■□□□□ 0.09
VCPIP1-201ENST00000310421 ESF1Q9H501 851 aaKnown RBP15.62■□□□□ 0.09
VCPIP1-201ENST00000310421 BCANQ96GW7 911 aa15.62■□□□□ 0.09
VCPIP1-201ENST00000310421 NEUROD1Q13562 356 aa15.6■□□□□ 0.09
VCPIP1-201ENST00000310421 SLC24A1O60721 1099 aa15.57■□□□□ 0.08
VCPIP1-201ENST00000310421 RB1CC1Q8TDY2 1594 aa15.48■□□□□ 0.07
VCPIP1-201ENST00000310421 ANP32AP39687 249 aaKnown RBP15.45■□□□□ 0.06
VCPIP1-201ENST00000310421 ANP32BQ92688 251 aaKnown RBP15.43■□□□□ 0.06
VCPIP1-201ENST00000310421 STAG3Q9UJ98 1225 aa15.41■□□□□ 0.06
VCPIP1-201ENST00000310421 NPM1P06748 294 aaKnown RBP eCLIP15.41■□□□□ 0.06
VCPIP1-201ENST00000310421 TONSLQ96HA7 1378 aa15.4■□□□□ 0.06
VCPIP1-201ENST00000310421 UPF2Q9HAU5 1272 aaKnown RBP15.38■□□□□ 0.05
VCPIP1-201ENST00000310421 ACIN1Q9UKV3 1341 aaKnown RBP15.36■□□□□ 0.05
VCPIP1-201ENST00000310421 ZCCHC6Q5VYS8 1495 aaKnown RBP15.36■□□□□ 0.05
VCPIP1-201ENST00000310421 ZNF777Q9ULD5 760 aaPredicted RBP15.36■□□□□ 0.05
VCPIP1-201ENST00000310421 HSP90AA1P07900 732 aaKnown RBP15.35■□□□□ 0.05
VCPIP1-201ENST00000310421 CSRNP3Q8WYN3 585 aa15.32■□□□□ 0.04
VCPIP1-201ENST00000310421 NACADO15069 1562 aa15.25■□□□□ 0.03
VCPIP1-201ENST00000310421 BCL11AQ9H165 835 aa15.25■□□□□ 0.03
VCPIP1-201ENST00000310421 ARID3CA6NKF2 412 aa15.23■□□□□ 0.03
VCPIP1-201ENST00000310421 P3H3Q8IVL6 736 aa15.23■□□□□ 0.03
VCPIP1-201ENST00000310421 DCAF1Q9Y4B6 1507 aa15.23■□□□□ 0.03
VCPIP1-201ENST00000310421 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.22■□□□□ 0.03
VCPIP1-201ENST00000310421 MYH16Q9H6N6 1097 aa15.19■□□□□ 0.02
VCPIP1-201ENST00000310421 GTF3C3Q9Y5Q9 886 aa15.19■□□□□ 0.02
VCPIP1-201ENST00000310421 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
VCPIP1-201ENST00000310421 CHGAP10645 457 aaKnown RBP15.17■□□□□ 0.02
VCPIP1-201ENST00000310421 MTUS2Q5JR59 1369 aa15.16■□□□□ 0.02
VCPIP1-201ENST00000310421 EEA1Q15075 1411 aa15.14■□□□□ 0.01
VCPIP1-201ENST00000310421 WDR43Q15061 677 aaKnown RBP eCLIP15.12■□□□□ 0.01
VCPIP1-201ENST00000310421 TSPY4P0CV99 314 aa15.12■□□□□ 0.01
VCPIP1-201ENST00000310421 TSPY10P0CW01 314 aa15.12■□□□□ 0.01
VCPIP1-201ENST00000310421 NPM2Q86SE8 214 aaKnown RBP15.11■□□□□ 0.01
VCPIP1-201ENST00000310421 CDK11BP21127 795 aaKnown RBP15.11■□□□□ 0.01
VCPIP1-201ENST00000310421 EIF5BO60841 1220 aaKnown RBP15.1■□□□□ 0.01
VCPIP1-201ENST00000310421 CHMP7Q8WUX9 453 aaPredicted RBP15.09■□□□□ 0.01
VCPIP1-201ENST00000310421 BAZ1BQ9UIG0 1483 aaKnown RBP15.07■□□□□ 0
VCPIP1-201ENST00000310421 TMC1Q8TDI8 760 aa15.06■□□□□ 0
VCPIP1-201ENST00000310421 CLIP1P30622 1438 aa15.06■□□□□ 0
VCPIP1-201ENST00000310421 GOLGA3Q08378 1498 aa15.03■□□□□ -0
VCPIP1-201ENST00000310421 GLIPR1L2Q4G1C9 344 aa15.03■□□□□ -0
VCPIP1-201ENST00000310421 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
VCPIP1-201ENST00000310421 HNRNPUQ00839 825 aaKnown RBP eCLIP15.02■□□□□ -0
VCPIP1-201ENST00000310421 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.02■□□□□ -0
VCPIP1-201ENST00000310421 ERCC6Q03468 1493 aa15□□□□□ -0.01
VCPIP1-201ENST00000310421 PLPPR3Q6T4P5 718 aa15□□□□□ -0.01
VCPIP1-201ENST00000310421 CDCA8Q53HL2 280 aa15□□□□□ -0.01
VCPIP1-201ENST00000310421 SCAF1Q9H7N4 1312 aaKnown RBP14.99□□□□□ -0.01
VCPIP1-201ENST00000310421 CCDC136Q96JN2 1154 aa14.98□□□□□ -0.01
VCPIP1-201ENST00000310421 ANP32EQ9BTT0 268 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms