RNA–Protein interactions for RNA: ENST00000308783.9

KDM2A-201, Transcript of lysine demethylase 2A, humanhuman

TSL 1 (best) BASIC

Gene KDM2A, Length 3,666 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM2A-201ENST00000308783 NISCHQ9Y2I1 1504 aa22.42■■□□□ 1.18
KDM2A-201ENST00000308783 CCDC180Q9P1Z9 1646 aa19.27■□□□□ 0.68
KDM2A-201ENST00000308783 ZCCHC6Q5VYS8 1495 aaKnown RBP18.85■□□□□ 0.61
KDM2A-201ENST00000308783 DCAF8L2P0C7V8 631 aa18.82■□□□□ 0.6
KDM2A-201ENST00000308783 SHROOM4Q9ULL8 1493 aa18.79■□□□□ 0.6
KDM2A-201ENST00000308783 ABCC9O60706 1549 aa18.42■□□□□ 0.54
KDM2A-201ENST00000308783 DCAF1Q9Y4B6 1507 aa18.35■□□□□ 0.53
KDM2A-201ENST00000308783 SUPT5HO00267 1087 aaKnown RBP18.14■□□□□ 0.5
KDM2A-201ENST00000308783 SCRIBQ14160 1630 aa18.04■□□□□ 0.48
KDM2A-201ENST00000308783 MYO15BQ96JP2 1530 aa18.02■□□□□ 0.47
KDM2A-201ENST00000308783 PELP1Q8IZL8 1130 aaKnown RBP17.96■□□□□ 0.47
KDM2A-201ENST00000308783 NACADO15069 1562 aa17.96■□□□□ 0.47
KDM2A-201ENST00000308783 RB1CC1Q8TDY2 1594 aa17.8■□□□□ 0.44
KDM2A-201ENST00000308783 MYT1Q01538 1121 aa17.6■□□□□ 0.41
KDM2A-201ENST00000308783 CECR2Q9BXF3 1484 aa17.58■□□□□ 0.4
KDM2A-201ENST00000308783 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
KDM2A-201ENST00000308783 RSF1Q96T23 1441 aaPredicted RBP17.54■□□□□ 0.4
KDM2A-201ENST00000308783 PABPN1Q86U42 306 aaKnown RBP eCLIP17.53■□□□□ 0.4
KDM2A-201ENST00000308783 MROH2BQ7Z745 1585 aa17.44■□□□□ 0.38
KDM2A-201ENST00000308783 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
KDM2A-201ENST00000308783 CHIC1Q5VXU3 224 aa17.34■□□□□ 0.37
KDM2A-201ENST00000308783 WIZO95785 1651 aa17.31■□□□□ 0.36
KDM2A-201ENST00000308783 BAZ1AQ9NRL2 1556 aaPredicted RBP17.24■□□□□ 0.35
KDM2A-201ENST00000308783 SMARCA4P51532 1647 aa17.18■□□□□ 0.34
KDM2A-201ENST00000308783 TOP2AP11388 1531 aaKnown RBP16.99■□□□□ 0.31
KDM2A-201ENST00000308783 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
KDM2A-201ENST00000308783 TRIM41Q8WV44 630 aa16.91■□□□□ 0.3
KDM2A-201ENST00000308783 SMARCA2P51531 1590 aa16.9■□□□□ 0.3
KDM2A-201ENST00000308783 ATAD2BQ9ULI0 1458 aa16.9■□□□□ 0.3
KDM2A-201ENST00000308783 PRKCSHP14314 528 aaPredicted RBP16.86■□□□□ 0.29
KDM2A-201ENST00000308783 PEG3Q9GZU2 1588 aa16.86■□□□□ 0.29
KDM2A-201ENST00000308783 LOC105371045A0A1W2PR82 267 aa16.86■□□□□ 0.29
KDM2A-201ENST00000308783 EHMT2Q96KQ7 1210 aa16.85■□□□□ 0.29
KDM2A-201ENST00000308783 EIF4G1Q04637 1599 aaKnown RBP16.82■□□□□ 0.28
KDM2A-201ENST00000308783 BAZ1BQ9UIG0 1483 aaKnown RBP16.8■□□□□ 0.28
KDM2A-201ENST00000308783 FAM9AQ8IZU1 332 aaPredicted RBP16.8■□□□□ 0.28
KDM2A-201ENST00000308783 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
KDM2A-201ENST00000308783 TTBK1Q5TCY1 1321 aaPredicted RBP16.71■□□□□ 0.27
KDM2A-201ENST00000308783 HRCP23327 699 aa16.68■□□□□ 0.26
KDM2A-201ENST00000308783 PPARGC1BQ86YN6 1023 aaKnown RBP16.67■□□□□ 0.26
KDM2A-201ENST00000308783 NCAPD3P42695 1498 aa16.65■□□□□ 0.26
KDM2A-201ENST00000308783 SCAF1Q9H7N4 1312 aaKnown RBP16.58■□□□□ 0.24
KDM2A-201ENST00000308783 HMGXB3Q12766 1538 aa16.57■□□□□ 0.24
KDM2A-201ENST00000308783 CC2D2AQ9P2K1 1620 aa16.56■□□□□ 0.24
KDM2A-201ENST00000308783 BCL11AQ9H165 835 aa16.55■□□□□ 0.24
KDM2A-201ENST00000308783 WRNQ14191 1432 aaPredicted RBP eCLIP16.48■□□□□ 0.23
KDM2A-201ENST00000308783 SOGA1O94964 1423 aa16.47■□□□□ 0.23
KDM2A-201ENST00000308783 SYNJ1O43426 1573 aa16.44■□□□□ 0.22
KDM2A-201ENST00000308783 RUSC2Q8N2Y8 1516 aa16.44■□□□□ 0.22
KDM2A-201ENST00000308783 DNAJC5BQ9UF47 199 aa16.42■□□□□ 0.22
KDM2A-201ENST00000308783 ERICH6Q7L0X2 663 aa16.41■□□□□ 0.22
KDM2A-201ENST00000308783 CFTRP13569 1480 aa16.37■□□□□ 0.21
KDM2A-201ENST00000308783 PCGF6Q9BYE7 350 aa16.35■□□□□ 0.21
KDM2A-201ENST00000308783 CADPSQ9ULU8 1353 aa16.3■□□□□ 0.2
KDM2A-201ENST00000308783 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
KDM2A-201ENST00000308783 NESP48681 1621 aa16.26■□□□□ 0.19
KDM2A-201ENST00000308783 CUX1P39880 1505 aa16.26■□□□□ 0.19
KDM2A-201ENST00000308783 TOP2BQ02880 1626 aa16.25■□□□□ 0.19
KDM2A-201ENST00000308783 UBTFP17480 764 aaKnown RBP16.19■□□□□ 0.18
KDM2A-201ENST00000308783 BIVM-ERCC5R4GMW8 1640 aa16.19■□□□□ 0.18
KDM2A-201ENST00000308783 EEA1Q15075 1411 aa16.18■□□□□ 0.18
KDM2A-201ENST00000308783 PRDM2Q13029 1718 aa16.15■□□□□ 0.18
KDM2A-201ENST00000308783 FANCD2Q9BXW9 1451 aa16.14■□□□□ 0.17
KDM2A-201ENST00000308783 SLC24A1O60721 1099 aa16.12■□□□□ 0.17
KDM2A-201ENST00000308783 RANGAP1P46060 587 aaPredicted RBP16.09■□□□□ 0.17
KDM2A-201ENST00000308783 CEP162Q5TB80 1403 aa16.09■□□□□ 0.17
KDM2A-201ENST00000308783 GOLGA3Q08378 1498 aa16.08■□□□□ 0.17
KDM2A-201ENST00000308783 RAPGEF2Q9Y4G8 1499 aa16.08■□□□□ 0.16
KDM2A-201ENST00000308783 TNIKQ9UKE5 1360 aa16.08■□□□□ 0.16
KDM2A-201ENST00000308783 CENPBP07199 599 aaPredicted RBP16.07■□□□□ 0.16
KDM2A-201ENST00000308783 FGD5Q6ZNL6 1462 aa16.05■□□□□ 0.16
KDM2A-201ENST00000308783 CEP164Q9UPV0 1460 aa16.05■□□□□ 0.16
KDM2A-201ENST00000308783 APLP2Q06481 763 aa16.01■□□□□ 0.15
KDM2A-201ENST00000308783 KIF21BO75037 1637 aa16.01■□□□□ 0.15
KDM2A-201ENST00000308783 TRIM26Q12899 539 aaPredicted RBP16.01■□□□□ 0.15
KDM2A-201ENST00000308783 LAMC3Q9Y6N6 1575 aa16.01■□□□□ 0.15
KDM2A-201ENST00000308783 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
KDM2A-201ENST00000308783 CUX2O14529 1486 aa16■□□□□ 0.15
KDM2A-201ENST00000308783 RAD54L2Q9Y4B4 1467 aa15.99■□□□□ 0.15
KDM2A-201ENST00000308783 TOPBP1Q92547 1522 aa15.98■□□□□ 0.15
KDM2A-201ENST00000308783 URB2Q14146 1524 aaKnown RBP15.96■□□□□ 0.14
KDM2A-201ENST00000308783 PRXQ9BXM0 1461 aa15.95■□□□□ 0.14
KDM2A-201ENST00000308783 GTF3C3Q9Y5Q9 886 aa15.94■□□□□ 0.14
KDM2A-201ENST00000308783 DNMBPQ6XZF7 1577 aa15.94■□□□□ 0.14
KDM2A-201ENST00000308783 POLA1P09884 1462 aaPredicted RBP15.94■□□□□ 0.14
KDM2A-201ENST00000308783 KIF21AQ7Z4S6 1674 aa15.94■□□□□ 0.14
KDM2A-201ENST00000308783 PDS5BQ9NTI5 1447 aa15.93■□□□□ 0.14
KDM2A-201ENST00000308783 IGF1RP08069 1367 aa15.92■□□□□ 0.14
KDM2A-201ENST00000308783 CLIP1P30622 1438 aa15.9■□□□□ 0.14
KDM2A-201ENST00000308783 ERICH3Q5RHP9 1530 aa15.85■□□□□ 0.13
KDM2A-201ENST00000308783 TDRD9Q8NDG6 1382 aaKnown RBP15.84■□□□□ 0.13
KDM2A-201ENST00000308783 CARMIL1Q5VZK9 1371 aa15.83■□□□□ 0.12
KDM2A-201ENST00000308783 ABCA10Q8WWZ4 1543 aa15.82■□□□□ 0.12
KDM2A-201ENST00000308783 ACIN1Q9UKV3 1341 aaKnown RBP15.78■□□□□ 0.12
KDM2A-201ENST00000308783 NEUROD1Q13562 356 aa15.76■□□□□ 0.11
KDM2A-201ENST00000308783 VPS8Q8N3P4 1428 aa15.74■□□□□ 0.11
KDM2A-201ENST00000308783 ARAP1Q96P48 1450 aa15.73■□□□□ 0.11
KDM2A-201ENST00000308783 MRC2Q9UBG0 1479 aa15.72■□□□□ 0.11
KDM2A-201ENST00000308783 WDR97A6NE52 1622 aa15.72■□□□□ 0.11
KDM2A-201ENST00000308783 GAPVD1Q14C86 1478 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms