RNA–Protein interactions for RNA: ENST00000307522.3

CCDC8-201, Transcript of coiled-coil domain containing 8, humanhuman

APPRIS P1 BASIC

Gene CCDC8, Length 3,213 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC8-201ENST00000307522 NISCHQ9Y2I1 1504 aa32.7■■■□□ 2.83
CCDC8-201ENST00000307522 DCAF8L2P0C7V8 631 aa28.65■■■□□ 2.18
CCDC8-201ENST00000307522 SHROOM4Q9ULL8 1493 aa28.64■■■□□ 2.18
CCDC8-201ENST00000307522 SUPT5HO00267 1087 aaKnown RBP27.84■■■□□ 2.05
CCDC8-201ENST00000307522 CCDC180Q9P1Z9 1646 aa27.52■■■□□ 2
CCDC8-201ENST00000307522 ZCCHC6Q5VYS8 1495 aaKnown RBP27.45■■□□□ 1.98
CCDC8-201ENST00000307522 PPARGC1BQ86YN6 1023 aaKnown RBP27.41■■□□□ 1.98
CCDC8-201ENST00000307522 HRCP23327 699 aa27.37■■□□□ 1.97
CCDC8-201ENST00000307522 PCGF6Q9BYE7 350 aa27.11■■□□□ 1.93
CCDC8-201ENST00000307522 ABCC9O60706 1549 aa27.07■■□□□ 1.92
CCDC8-201ENST00000307522 SCRIBQ14160 1630 aa26.55■■□□□ 1.84
CCDC8-201ENST00000307522 MYO15BQ96JP2 1530 aa26.48■■□□□ 1.83
CCDC8-201ENST00000307522 PELP1Q8IZL8 1130 aaKnown RBP26.43■■□□□ 1.82
CCDC8-201ENST00000307522 SCAF1Q9H7N4 1312 aaKnown RBP26.31■■□□□ 1.8
CCDC8-201ENST00000307522 CHIC1Q5VXU3 224 aa26.3■■□□□ 1.8
CCDC8-201ENST00000307522 DCAF1Q9Y4B6 1507 aa26.3■■□□□ 1.8
CCDC8-201ENST00000307522 EHMT2Q96KQ7 1210 aa26.18■■□□□ 1.78
CCDC8-201ENST00000307522 PABPN1Q86U42 306 aaKnown RBP eCLIP26.14■■□□□ 1.78
CCDC8-201ENST00000307522 LOC105371045A0A1W2PR82 267 aa26.03■■□□□ 1.76
CCDC8-201ENST00000307522 CECR2Q9BXF3 1484 aa25.96■■□□□ 1.75
CCDC8-201ENST00000307522 FAM9AQ8IZU1 332 aaPredicted RBP25.94■■□□□ 1.74
CCDC8-201ENST00000307522 RSF1Q96T23 1441 aaPredicted RBP25.89■■□□□ 1.74
CCDC8-201ENST00000307522 NACADO15069 1562 aa25.81■■□□□ 1.72
CCDC8-201ENST00000307522 TRIM26Q12899 539 aaPredicted RBP25.66■■□□□ 1.7
CCDC8-201ENST00000307522 MROH2BQ7Z745 1585 aa25.64■■□□□ 1.69
CCDC8-201ENST00000307522 RB1CC1Q8TDY2 1594 aa25.64■■□□□ 1.69
CCDC8-201ENST00000307522 TRIM41Q8WV44 630 aa25.63■■□□□ 1.69
CCDC8-201ENST00000307522 NEUROD1Q13562 356 aa25.52■■□□□ 1.68
CCDC8-201ENST00000307522 WIZO95785 1651 aa25.45■■□□□ 1.67
CCDC8-201ENST00000307522 GTF3C3Q9Y5Q9 886 aa25.44■■□□□ 1.66
CCDC8-201ENST00000307522 ACIN1Q9UKV3 1341 aaKnown RBP25.37■■□□□ 1.65
CCDC8-201ENST00000307522 ZEB1P37275 1124 aaPredicted RBP25.28■■□□□ 1.64
CCDC8-201ENST00000307522 MYT1Q01538 1121 aa25.28■■□□□ 1.64
CCDC8-201ENST00000307522 UNC13AQ9UPW8 1703 aa25.18■■□□□ 1.62
CCDC8-201ENST00000307522 TTBK1Q5TCY1 1321 aaPredicted RBP25.08■■□□□ 1.61
CCDC8-201ENST00000307522 BAZ1AQ9NRL2 1556 aaPredicted RBP25.07■■□□□ 1.6
CCDC8-201ENST00000307522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.04■■□□□ 1.6
CCDC8-201ENST00000307522 YTHDC1Q96MU7 727 aaKnown RBP25.03■■□□□ 1.6
CCDC8-201ENST00000307522 BICRAQ9NZM4 1560 aa25.03■■□□□ 1.6
CCDC8-201ENST00000307522 SMARCA4P51532 1647 aa24.96■■□□□ 1.59
CCDC8-201ENST00000307522 CCDC88BA6NC98 1476 aa24.95■■□□□ 1.58
CCDC8-201ENST00000307522 CENPBP07199 599 aaPredicted RBP24.93■■□□□ 1.58
CCDC8-201ENST00000307522 ABCC8Q09428 1581 aa24.93■■□□□ 1.58
CCDC8-201ENST00000307522 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
CCDC8-201ENST00000307522 DIEXFQ68CQ4 756 aaKnown RBP24.9■■□□□ 1.58
CCDC8-201ENST00000307522 CCER1Q8TC90 406 aaPredicted RBP24.85■■□□□ 1.57
CCDC8-201ENST00000307522 TOP2AP11388 1531 aaKnown RBP24.74■■□□□ 1.55
CCDC8-201ENST00000307522 SMARCA2P51531 1590 aa24.69■■□□□ 1.54
CCDC8-201ENST00000307522 UBTFP17480 764 aaKnown RBP24.66■■□□□ 1.54
CCDC8-201ENST00000307522 SOGA1O94964 1423 aa24.65■■□□□ 1.54
CCDC8-201ENST00000307522 ATAD2BQ9ULI0 1458 aa24.62■■□□□ 1.53
CCDC8-201ENST00000307522 BAZ1BQ9UIG0 1483 aaKnown RBP24.6■■□□□ 1.53
CCDC8-201ENST00000307522 RUSC2Q8N2Y8 1516 aa24.6■■□□□ 1.53
CCDC8-201ENST00000307522 CSRNP3Q8WYN3 585 aa24.42■■□□□ 1.5
CCDC8-201ENST00000307522 BCL11AQ9H165 835 aa24.39■■□□□ 1.49
CCDC8-201ENST00000307522 EIF4G1Q04637 1599 aaKnown RBP24.38■■□□□ 1.49
CCDC8-201ENST00000307522 WRNQ14191 1432 aaPredicted RBP eCLIP24.38■■□□□ 1.49
CCDC8-201ENST00000307522 DNAJC5BQ9UF47 199 aa24.35■■□□□ 1.49
CCDC8-201ENST00000307522 MIER1Q8N108 512 aa24.33■■□□□ 1.49
CCDC8-201ENST00000307522 SYNJ1O43426 1573 aa24.2■■□□□ 1.46
CCDC8-201ENST00000307522 ZNF316A6NFI3 1004 aaPredicted RBP24.18■■□□□ 1.46
CCDC8-201ENST00000307522 PEG3Q9GZU2 1588 aa24.15■■□□□ 1.46
CCDC8-201ENST00000307522 CEP162Q5TB80 1403 aa24.11■■□□□ 1.45
CCDC8-201ENST00000307522 NCAPD3P42695 1498 aa24.05■■□□□ 1.44
CCDC8-201ENST00000307522 ANP32EQ9BTT0 268 aa24.04■■□□□ 1.44
CCDC8-201ENST00000307522 SUPT16HQ9Y5B9 1047 aaKnown RBP23.97■■□□□ 1.43
CCDC8-201ENST00000307522 TSHZ2Q9NRE2 1034 aa23.95■■□□□ 1.43
CCDC8-201ENST00000307522 HNRNPUL2Q1KMD3 747 aaKnown RBP23.95■■□□□ 1.42
CCDC8-201ENST00000307522 RAPGEF2Q9Y4G8 1499 aa23.95■■□□□ 1.42
CCDC8-201ENST00000307522 CC2D2AQ9P2K1 1620 aa23.94■■□□□ 1.42
CCDC8-201ENST00000307522 BCANQ96GW7 911 aa23.93■■□□□ 1.42
CCDC8-201ENST00000307522 TNIKQ9UKE5 1360 aa23.91■■□□□ 1.42
CCDC8-201ENST00000307522 NESP48681 1621 aa23.9■■□□□ 1.42
CCDC8-201ENST00000307522 P3H3Q8IVL6 736 aa23.89■■□□□ 1.42
CCDC8-201ENST00000307522 GOLGA3Q08378 1498 aa23.87■■□□□ 1.41
CCDC8-201ENST00000307522 ATP1B4Q9UN42 357 aaPredicted RBP23.87■■□□□ 1.41
CCDC8-201ENST00000307522 APLP2Q06481 763 aa23.83■■□□□ 1.41
CCDC8-201ENST00000307522 CUX1P39880 1505 aa23.83■■□□□ 1.41
CCDC8-201ENST00000307522 CADPSQ9ULU8 1353 aa23.81■■□□□ 1.4
CCDC8-201ENST00000307522 CLIP1P30622 1438 aa23.81■■□□□ 1.4
CCDC8-201ENST00000307522 HMGXB3Q12766 1538 aa23.8■■□□□ 1.4
CCDC8-201ENST00000307522 CFTRP13569 1480 aa23.78■■□□□ 1.4
CCDC8-201ENST00000307522 EEA1Q15075 1411 aa23.76■■□□□ 1.39
CCDC8-201ENST00000307522 CEP164Q9UPV0 1460 aa23.75■■□□□ 1.39
CCDC8-201ENST00000307522 ITGAEP38570 1179 aa23.72■■□□□ 1.39
CCDC8-201ENST00000307522 CUX2O14529 1486 aa23.7■■□□□ 1.39
CCDC8-201ENST00000307522 TOP2BQ02880 1626 aa23.68■■□□□ 1.38
CCDC8-201ENST00000307522 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
CCDC8-201ENST00000307522 KIF27Q86VH2 1401 aa23.63■■□□□ 1.37
CCDC8-201ENST00000307522 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
CCDC8-201ENST00000307522 FANCD2Q9BXW9 1451 aa23.61■■□□□ 1.37
CCDC8-201ENST00000307522 FGD5Q6ZNL6 1462 aa23.58■■□□□ 1.36
CCDC8-201ENST00000307522 PRKCSHP14314 528 aaPredicted RBP23.56■■□□□ 1.36
CCDC8-201ENST00000307522 KCNH8Q96L42 1107 aa23.55■■□□□ 1.36
CCDC8-201ENST00000307522 TDRD9Q8NDG6 1382 aaKnown RBP23.55■■□□□ 1.36
CCDC8-201ENST00000307522 ARID3CA6NKF2 412 aa23.53■■□□□ 1.36
CCDC8-201ENST00000307522 IGF1RP08069 1367 aa23.52■■□□□ 1.36
CCDC8-201ENST00000307522 CARMIL1Q5VZK9 1371 aa23.47■■□□□ 1.35
CCDC8-201ENST00000307522 BIVM-ERCC5R4GMW8 1640 aa23.45■■□□□ 1.34
CCDC8-201ENST00000307522 FKBP8Q14318 412 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms