RNA–Protein interactions for RNA: ENST00000301717.8

SPSB3-201, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB3, Length 1,449 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-201ENST00000301717 NISCHQ9Y2I1 1504 aa44.3■■■■■ 4.68
SPSB3-201ENST00000301717 CCDC180Q9P1Z9 1646 aa39.26■■■■□ 3.88
SPSB3-201ENST00000301717 ABCC9O60706 1549 aa38.67■■■■□ 3.78
SPSB3-201ENST00000301717 DCAF8L2P0C7V8 631 aa37.18■■■■□ 3.54
SPSB3-201ENST00000301717 RB1CC1Q8TDY2 1594 aa37.02■■■■□ 3.52
SPSB3-201ENST00000301717 NACADO15069 1562 aa36.95■■■■□ 3.51
SPSB3-201ENST00000301717 ZCCHC6Q5VYS8 1495 aaKnown RBP36.91■■■■□ 3.5
SPSB3-201ENST00000301717 MYO15BQ96JP2 1530 aa36.66■■■■□ 3.46
SPSB3-201ENST00000301717 DCAF1Q9Y4B6 1507 aa36.54■■■■□ 3.44
SPSB3-201ENST00000301717 UNC13AQ9UPW8 1703 aa36.22■■■■□ 3.39
SPSB3-201ENST00000301717 PABPN1Q86U42 306 aaKnown RBP eCLIP36.2■■■■□ 3.39
SPSB3-201ENST00000301717 SCRIBQ14160 1630 aa36.03■■■■□ 3.36
SPSB3-201ENST00000301717 BICRAQ9NZM4 1560 aa36.01■■■■□ 3.35
SPSB3-201ENST00000301717 DNAJC5BQ9UF47 199 aa35.58■■■■□ 3.29
SPSB3-201ENST00000301717 SHROOM4Q9ULL8 1493 aa35.41■■■■□ 3.26
SPSB3-201ENST00000301717 EIF4G1Q04637 1599 aaKnown RBP35.03■■■■□ 3.2
SPSB3-201ENST00000301717 CC2D2AQ9P2K1 1620 aa34.9■■■■□ 3.18
SPSB3-201ENST00000301717 CECR2Q9BXF3 1484 aa34.69■■■■□ 3.14
SPSB3-201ENST00000301717 SMARCA4P51532 1647 aa34.38■■■■□ 3.09
SPSB3-201ENST00000301717 BAZ1AQ9NRL2 1556 aaPredicted RBP34.3■■■■□ 3.08
SPSB3-201ENST00000301717 MROH2BQ7Z745 1585 aa34.22■■■■□ 3.07
SPSB3-201ENST00000301717 ATAD2BQ9ULI0 1458 aa34.22■■■■□ 3.07
SPSB3-201ENST00000301717 NCAPD3P42695 1498 aa34.15■■■■□ 3.06
SPSB3-201ENST00000301717 SMARCA2P51531 1590 aa34.09■■■■□ 3.05
SPSB3-201ENST00000301717 PEG3Q9GZU2 1588 aa33.97■■■■□ 3.03
SPSB3-201ENST00000301717 HMGXB3Q12766 1538 aa33.95■■■■□ 3.02
SPSB3-201ENST00000301717 BAZ1BQ9UIG0 1483 aaKnown RBP33.92■■■■□ 3.02
SPSB3-201ENST00000301717 WIZO95785 1651 aa33.84■■■■□ 3.01
SPSB3-201ENST00000301717 RSF1Q96T23 1441 aaPredicted RBP33.81■■■■□ 3
SPSB3-201ENST00000301717 NESP48681 1621 aa33.49■■■□□ 2.95
SPSB3-201ENST00000301717 TOP2AP11388 1531 aaKnown RBP33.42■■■□□ 2.94
SPSB3-201ENST00000301717 ERCC6Q03468 1493 aa33.26■■■□□ 2.91
SPSB3-201ENST00000301717 LAMC3Q9Y6N6 1575 aa33.21■■■□□ 2.91
SPSB3-201ENST00000301717 CADPSQ9ULU8 1353 aa33.19■■■□□ 2.9
SPSB3-201ENST00000301717 CCDC88BA6NC98 1476 aa33.08■■■□□ 2.89
SPSB3-201ENST00000301717 SUPT5HO00267 1087 aaKnown RBP33.05■■■□□ 2.88
SPSB3-201ENST00000301717 PDS5BQ9NTI5 1447 aa33.01■■■□□ 2.88
SPSB3-201ENST00000301717 KIF21AQ7Z4S6 1674 aa32.99■■■□□ 2.87
SPSB3-201ENST00000301717 CFTRP13569 1480 aa32.98■■■□□ 2.87
SPSB3-201ENST00000301717 THOC2Q8NI27 1593 aaKnown RBP32.88■■■□□ 2.85
SPSB3-201ENST00000301717 FANCD2Q9BXW9 1451 aa32.83■■■□□ 2.85
SPSB3-201ENST00000301717 CUX2O14529 1486 aa32.82■■■□□ 2.85
SPSB3-201ENST00000301717 CEP164Q9UPV0 1460 aa32.77■■■□□ 2.84
SPSB3-201ENST00000301717 MRC2Q9UBG0 1479 aa32.72■■■□□ 2.83
SPSB3-201ENST00000301717 PRDM2Q13029 1718 aa32.6■■■□□ 2.81
SPSB3-201ENST00000301717 WDR62O43379 1518 aa32.59■■■□□ 2.81
SPSB3-201ENST00000301717 URB2Q14146 1524 aaKnown RBP32.54■■■□□ 2.8
SPSB3-201ENST00000301717 TOPBP1Q92547 1522 aa32.3■■■□□ 2.76
SPSB3-201ENST00000301717 DNMBPQ6XZF7 1577 aa32.22■■■□□ 2.75
SPSB3-201ENST00000301717 ABCC8Q09428 1581 aa32.15■■■□□ 2.74
SPSB3-201ENST00000301717 CUX1P39880 1505 aa32.09■■■□□ 2.73
SPSB3-201ENST00000301717 IFT140Q96RY7 1462 aa32.05■■■□□ 2.72
SPSB3-201ENST00000301717 POLA1P09884 1462 aaPredicted RBP32.04■■■□□ 2.72
SPSB3-201ENST00000301717 ZNF608Q9ULD9 1512 aaPredicted RBP32.04■■■□□ 2.72
SPSB3-201ENST00000301717 FGD5Q6ZNL6 1462 aa31.97■■■□□ 2.71
SPSB3-201ENST00000301717 RAD54L2Q9Y4B4 1467 aa31.97■■■□□ 2.71
SPSB3-201ENST00000301717 TARBP1Q13395 1621 aaKnown RBP31.94■■■□□ 2.7
SPSB3-201ENST00000301717 DNAJC5Q9H3Z4 198 aa31.92■■■□□ 2.7
SPSB3-201ENST00000301717 SOGA1O94964 1423 aa31.89■■■□□ 2.7
SPSB3-201ENST00000301717 AQRO60306 1485 aaKnown RBP eCLIP31.85■■■□□ 2.692e-8■■■■■ 44.6
SPSB3-201ENST00000301717 WRNQ14191 1432 aaPredicted RBP eCLIP31.84■■■□□ 2.69
SPSB3-201ENST00000301717 EIF4G3O43432 1585 aaKnown RBP31.83■■■□□ 2.69
SPSB3-201ENST00000301717 SYNJ1O43426 1573 aa31.81■■■□□ 2.68
SPSB3-201ENST00000301717 TDRD9Q8NDG6 1382 aaKnown RBP31.79■■■□□ 2.68
SPSB3-201ENST00000301717 TOP2BQ02880 1626 aa31.73■■■□□ 2.67
SPSB3-201ENST00000301717 BIVM-ERCC5R4GMW8 1640 aa31.71■■■□□ 2.67
SPSB3-201ENST00000301717 WDR97A6NE52 1622 aa31.63■■■□□ 2.65
SPSB3-201ENST00000301717 ABCA10Q8WWZ4 1543 aa31.6■■■□□ 2.65
SPSB3-201ENST00000301717 OSCARQ8IYS5 282 aa31.52■■■□□ 2.64
SPSB3-201ENST00000301717 GAPVD1Q14C86 1478 aa31.52■■■□□ 2.64
SPSB3-201ENST00000301717 SNAPC4Q5SXM2 1469 aa31.52■■■□□ 2.64
SPSB3-201ENST00000301717 GRIN2BQ13224 1484 aa31.49■■■□□ 2.63
SPSB3-201ENST00000301717 FBLN2P98095 1184 aa31.49■■■□□ 2.63
SPSB3-201ENST00000301717 ABCA5Q8WWZ7 1642 aa31.49■■■□□ 2.63
SPSB3-201ENST00000301717 PBRM1Q86U86 1689 aa31.42■■■□□ 2.62
SPSB3-201ENST00000301717 CHD1O14646 1710 aa31.41■■■□□ 2.62
SPSB3-201ENST00000301717 MAGI1Q96QZ7 1491 aaPredicted RBP31.37■■■□□ 2.61
SPSB3-201ENST00000301717 CHMP7Q8WUX9 453 aaPredicted RBP31.32■■■□□ 2.6
SPSB3-201ENST00000301717 SYNJ2O15056 1496 aa31.28■■■□□ 2.6
SPSB3-201ENST00000301717 ADAMTS12P58397 1594 aa31.2■■■□□ 2.59
SPSB3-201ENST00000301717 ERICH3Q5RHP9 1530 aa31.19■■■□□ 2.58
SPSB3-201ENST00000301717 KIF27Q86VH2 1401 aa31.14■■■□□ 2.58
SPSB3-201ENST00000301717 FHAD1B1AJZ9 1412 aa31.13■■■□□ 2.57
SPSB3-201ENST00000301717 GRIN2AQ12879 1464 aa31.11■■■□□ 2.57
SPSB3-201ENST00000301717 TRIM41Q8WV44 630 aa31.11■■■□□ 2.57
SPSB3-201ENST00000301717 CLASP1Q7Z460 1538 aa31.07■■■□□ 2.57
SPSB3-201ENST00000301717 IGF1RP08069 1367 aa31.07■■■□□ 2.56
SPSB3-201ENST00000301717 ARHGEF11O15085 1522 aa31.05■■■□□ 2.56
SPSB3-201ENST00000301717 RIMBP3CA6NJZ7 1639 aa31.04■■■□□ 2.56
SPSB3-201ENST00000301717 RIMBP3BA6NNM3 1639 aa31.04■■■□□ 2.56
SPSB3-201ENST00000301717 RIMBP3Q9UFD9 1639 aa31.04■■■□□ 2.56
SPSB3-201ENST00000301717 RUSC2Q8N2Y8 1516 aa31.03■■■□□ 2.56
SPSB3-201ENST00000301717 CEP170Q5SW79 1584 aa30.99■■■□□ 2.55
SPSB3-201ENST00000301717 NUP160Q12769 1436 aa30.97■■■□□ 2.55
SPSB3-201ENST00000301717 CUL7Q14999 1698 aa30.88■■■□□ 2.53
SPSB3-201ENST00000301717 CARMIL1Q5VZK9 1371 aa30.87■■■□□ 2.53
SPSB3-201ENST00000301717 ARAP1Q96P48 1450 aa30.84■■■□□ 2.53
SPSB3-201ENST00000301717 CYB5RLQ6IPT4 315 aa30.82■■■□□ 2.52
SPSB3-201ENST00000301717 CHIC1Q5VXU3 224 aa30.78■■■□□ 2.52
SPSB3-201ENST00000301717 ERCC6L2Q5T890 1561 aa30.77■■■□□ 2.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms