RNA–Protein interactions for RNA: ENST00000261438.9

KLF3-201, Transcript of Kruppel like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KLF3, Length 5,122 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KLF3-201ENST00000261438 SUPT5HO00267 1087 aaKnown RBP28.34■■■□□ 2.13
KLF3-201ENST00000261438 NISCHQ9Y2I1 1504 aa28.32■■■□□ 2.12
KLF3-201ENST00000261438 DCAF8L2P0C7V8 631 aa28.24■■■□□ 2.11
KLF3-201ENST00000261438 PELP1Q8IZL8 1130 aaKnown RBP27.96■■■□□ 2.07
KLF3-201ENST00000261438 PCGF6Q9BYE7 350 aa27.72■■■□□ 2.03
KLF3-201ENST00000261438 SHROOM4Q9ULL8 1493 aa27.67■■■□□ 2.02
KLF3-201ENST00000261438 MYT1Q01538 1121 aa27.48■■□□□ 1.99
KLF3-201ENST00000261438 ZEB1P37275 1124 aaPredicted RBP27.15■■□□□ 1.94
KLF3-201ENST00000261438 HRCP23327 699 aa27.15■■□□□ 1.94
KLF3-201ENST00000261438 CENPBP07199 599 aaPredicted RBP27.15■■□□□ 1.94
KLF3-201ENST00000261438 EHMT2Q96KQ7 1210 aa27.09■■□□□ 1.93
KLF3-201ENST00000261438 FAM9AQ8IZU1 332 aaPredicted RBP26.61■■□□□ 1.85
KLF3-201ENST00000261438 CCER1Q8TC90 406 aaPredicted RBP26.59■■□□□ 1.85
KLF3-201ENST00000261438 PPARGC1BQ86YN6 1023 aaKnown RBP26.56■■□□□ 1.84
KLF3-201ENST00000261438 TRIM26Q12899 539 aaPredicted RBP26.47■■□□□ 1.83
KLF3-201ENST00000261438 ERICH6Q7L0X2 663 aa26.4■■□□□ 1.82
KLF3-201ENST00000261438 TTBK1Q5TCY1 1321 aaPredicted RBP26.39■■□□□ 1.82
KLF3-201ENST00000261438 YTHDC1Q96MU7 727 aaKnown RBP26.38■■□□□ 1.81
KLF3-201ENST00000261438 APLP2Q06481 763 aa26.3■■□□□ 1.8
KLF3-201ENST00000261438 TRIM41Q8WV44 630 aa26.16■■□□□ 1.78
KLF3-201ENST00000261438 CHIC1Q5VXU3 224 aa26.03■■□□□ 1.76
KLF3-201ENST00000261438 LOC105371045A0A1W2PR82 267 aa25.95■■□□□ 1.74
KLF3-201ENST00000261438 NEFLP07196 543 aa25.94■■□□□ 1.74
KLF3-201ENST00000261438 GTF3C3Q9Y5Q9 886 aa25.77■■□□□ 1.72
KLF3-201ENST00000261438 DIEXFQ68CQ4 756 aaKnown RBP25.74■■□□□ 1.71
KLF3-201ENST00000261438 ACIN1Q9UKV3 1341 aaKnown RBP25.55■■□□□ 1.68
KLF3-201ENST00000261438 UBTFP17480 764 aaKnown RBP25.54■■□□□ 1.68
KLF3-201ENST00000261438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.52■■□□□ 1.68
KLF3-201ENST00000261438 RANGAP1P46060 587 aaPredicted RBP25.49■■□□□ 1.67
KLF3-201ENST00000261438 SCAF1Q9H7N4 1312 aaKnown RBP25.28■■□□□ 1.64
KLF3-201ENST00000261438 HNRNPUL2Q1KMD3 747 aaKnown RBP25.18■■□□□ 1.62
KLF3-201ENST00000261438 NEUROD1Q13562 356 aa25.04■■□□□ 1.6
KLF3-201ENST00000261438 ZNF316A6NFI3 1004 aaPredicted RBP25.03■■□□□ 1.6
KLF3-201ENST00000261438 BCANQ96GW7 911 aa25■■□□□ 1.59
KLF3-201ENST00000261438 RTL5Q5HYW3 569 aaPredicted RBP24.98■■□□□ 1.59
KLF3-201ENST00000261438 ATP1B4Q9UN42 357 aaPredicted RBP24.95■■□□□ 1.59
KLF3-201ENST00000261438 DCAF1Q9Y4B6 1507 aa24.91■■□□□ 1.58
KLF3-201ENST00000261438 DAXXQ9UER7 740 aaPredicted RBP24.88■■□□□ 1.57
KLF3-201ENST00000261438 ITGAEP38570 1179 aa24.84■■□□□ 1.57
KLF3-201ENST00000261438 CLSPNQ9HAW4 1339 aa24.71■■□□□ 1.55
KLF3-201ENST00000261438 CDK11AQ9UQ88 783 aaPredicted RBP24.7■■□□□ 1.55
KLF3-201ENST00000261438 POLR3GLQ9BT43 218 aa24.46■■□□□ 1.51
KLF3-201ENST00000261438 ANP32CO43423 234 aa24.45■■□□□ 1.5
KLF3-201ENST00000261438 MYO15BQ96JP2 1530 aa24.44■■□□□ 1.5
KLF3-201ENST00000261438 FKBP8Q14318 412 aa24.43■■□□□ 1.5
KLF3-201ENST00000261438 CNGB1Q14028 1251 aaPredicted RBP24.41■■□□□ 1.5
KLF3-201ENST00000261438 ANP32EQ9BTT0 268 aa24.37■■□□□ 1.49
KLF3-201ENST00000261438 MYT1LQ9UL68 1186 aa24.34■■□□□ 1.49
KLF3-201ENST00000261438 MIER1Q8N108 512 aa24.33■■□□□ 1.49
KLF3-201ENST00000261438 ANP32AP39687 249 aaKnown RBP24.23■■□□□ 1.47
KLF3-201ENST00000261438 CCDC180Q9P1Z9 1646 aa24.19■■□□□ 1.46
KLF3-201ENST00000261438 EIF5BO60841 1220 aaKnown RBP24.18■■□□□ 1.46
KLF3-201ENST00000261438 FAM50AQ14320 339 aaKnown RBP24.13■■□□□ 1.45
KLF3-201ENST00000261438 BCL11AQ9H165 835 aa24.13■■□□□ 1.45
KLF3-201ENST00000261438 NBR1Q14596 966 aa24.02■■□□□ 1.44
KLF3-201ENST00000261438 NPM2Q86SE8 214 aaKnown RBP23.98■■□□□ 1.43
KLF3-201ENST00000261438 DDX10Q13206 875 aaKnown RBP23.95■■□□□ 1.42
KLF3-201ENST00000261438 CSRNP3Q8WYN3 585 aa23.94■■□□□ 1.42
KLF3-201ENST00000261438 TRIM52Q96A61 297 aa23.92■■□□□ 1.42
KLF3-201ENST00000261438 HNRNPUQ00839 825 aaKnown RBP eCLIP23.92■■□□□ 1.42
KLF3-201ENST00000261438 SUPT16HQ9Y5B9 1047 aaKnown RBP23.88■■□□□ 1.41
KLF3-201ENST00000261438 ZBTB47Q9UFB7 747 aaPredicted RBP23.86■■□□□ 1.41
KLF3-201ENST00000261438 GLIPR1L2Q4G1C9 344 aa23.83■■□□□ 1.41
KLF3-201ENST00000261438 IRX6P78412 446 aaPredicted RBP23.73■■□□□ 1.39
KLF3-201ENST00000261438 CCDC136Q96JN2 1154 aa23.68■■□□□ 1.38
KLF3-201ENST00000261438 ZCCHC6Q5VYS8 1495 aaKnown RBP23.67■■□□□ 1.38
KLF3-201ENST00000261438 FAM9BQ8IZU0 186 aa23.65■■□□□ 1.38
KLF3-201ENST00000261438 ZNF326Q5BKZ1 582 aaKnown RBP23.61■■□□□ 1.37
KLF3-201ENST00000261438 TONSLQ96HA7 1378 aa23.58■■□□□ 1.37
KLF3-201ENST00000261438 RBM19Q9Y4C8 960 aaKnown RBP23.54■■□□□ 1.36
KLF3-201ENST00000261438 TSHZ2Q9NRE2 1034 aa23.54■■□□□ 1.36
KLF3-201ENST00000261438 DEKP35659 375 aaKnown RBP23.47■■□□□ 1.35
KLF3-201ENST00000261438 HIRIP3Q9BW71 556 aaPredicted RBP23.45■■□□□ 1.34
KLF3-201ENST00000261438 RTN4Q9NQC3 1192 aaKnown RBP23.45■■□□□ 1.34
KLF3-201ENST00000261438 CANXP27824 592 aaKnown RBP23.43■■□□□ 1.34
KLF3-201ENST00000261438 MRS2Q9HD23 443 aa23.43■■□□□ 1.34
KLF3-201ENST00000261438 SLC4A1APQ9BWU0 796 aaKnown RBP23.42■■□□□ 1.34
KLF3-201ENST00000261438 NOP58Q9Y2X3 529 aaKnown RBP23.42■■□□□ 1.34
KLF3-201ENST00000261438 CEP162Q5TB80 1403 aa23.38■■□□□ 1.33
KLF3-201ENST00000261438 ANP32BQ92688 251 aaKnown RBP23.36■■□□□ 1.33
KLF3-201ENST00000261438 PPP4R2Q9NY27 417 aa23.34■■□□□ 1.33
KLF3-201ENST00000261438 NEFMP07197 916 aa23.33■■□□□ 1.33
KLF3-201ENST00000261438 ARXQ96QS3 562 aa23.31■■□□□ 1.32
KLF3-201ENST00000261438 P3H3Q8IVL6 736 aa23.29■■□□□ 1.32
KLF3-201ENST00000261438 DDRGK1Q96HY6 314 aa23.29■■□□□ 1.32
KLF3-201ENST00000261438 PPM1GO15355 546 aaPredicted RBP23.28■■□□□ 1.32
KLF3-201ENST00000261438 UPF2Q9HAU5 1272 aaKnown RBP23.28■■□□□ 1.32
KLF3-201ENST00000261438 SALL2Q9Y467 1007 aaPredicted RBP23.28■■□□□ 1.32
KLF3-201ENST00000261438 CLIP1P30622 1438 aa23.27■■□□□ 1.32
KLF3-201ENST00000261438 TMC1Q8TDI8 760 aa23.27■■□□□ 1.32
KLF3-201ENST00000261438 LAS1LQ9Y4W2 734 aaKnown RBP23.21■■□□□ 1.31
KLF3-201ENST00000261438 ERICH6BQ5W0A0 696 aa23.21■■□□□ 1.31
KLF3-201ENST00000261438 B4GALNT3Q6L9W6 998 aa23.16■■□□□ 1.3
KLF3-201ENST00000261438 HSP90AA1P07900 732 aaKnown RBP23.15■■□□□ 1.3
KLF3-201ENST00000261438 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
KLF3-201ENST00000261438 EIF4G2P78344 907 aaKnown RBP eCLIP23.12■■□□□ 1.29
KLF3-201ENST00000261438 RSF1Q96T23 1441 aaPredicted RBP23.1■■□□□ 1.29
KLF3-201ENST00000261438 GOLGA3Q08378 1498 aa23.1■■□□□ 1.29
KLF3-201ENST00000261438 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.09■■□□□ 1.29
KLF3-201ENST00000261438 PABPN1Q86U42 306 aaKnown RBP eCLIP23.08■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms