RNA–Protein interactions for RNA: ENST00000243103.3

HOXC12-201, Transcript of homeobox C12, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC12, Length 3,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12-201ENST00000243103 NISCHQ9Y2I1 1504 aa27.3■■□□□ 1.96
HOXC12-201ENST00000243103 SHROOM4Q9ULL8 1493 aa25.79■■□□□ 1.72
HOXC12-201ENST00000243103 PPARGC1BQ86YN6 1023 aaKnown RBP25.64■■□□□ 1.69
HOXC12-201ENST00000243103 SUPT5HO00267 1087 aaKnown RBP25.5■■□□□ 1.67
HOXC12-201ENST00000243103 DCAF8L2P0C7V8 631 aa25.47■■□□□ 1.67
HOXC12-201ENST00000243103 PCGF6Q9BYE7 350 aa25.36■■□□□ 1.65
HOXC12-201ENST00000243103 HRCP23327 699 aa25.22■■□□□ 1.63
HOXC12-201ENST00000243103 PELP1Q8IZL8 1130 aaKnown RBP24.6■■□□□ 1.53
HOXC12-201ENST00000243103 EHMT2Q96KQ7 1210 aa24.59■■□□□ 1.53
HOXC12-201ENST00000243103 SCAF1Q9H7N4 1312 aaKnown RBP24.43■■□□□ 1.5
HOXC12-201ENST00000243103 LOC105371045A0A1W2PR82 267 aa24.15■■□□□ 1.46
HOXC12-201ENST00000243103 CHIC1Q5VXU3 224 aa23.94■■□□□ 1.42
HOXC12-201ENST00000243103 FAM9AQ8IZU1 332 aaPredicted RBP23.94■■□□□ 1.42
HOXC12-201ENST00000243103 MYO15BQ96JP2 1530 aa23.93■■□□□ 1.42
HOXC12-201ENST00000243103 GTF3C3Q9Y5Q9 886 aa23.82■■□□□ 1.4
HOXC12-201ENST00000243103 YTHDC1Q96MU7 727 aaKnown RBP23.77■■□□□ 1.4
HOXC12-201ENST00000243103 NEUROD1Q13562 356 aa23.74■■□□□ 1.39
HOXC12-201ENST00000243103 TTBK1Q5TCY1 1321 aaPredicted RBP23.66■■□□□ 1.38
HOXC12-201ENST00000243103 TRIM26Q12899 539 aaPredicted RBP23.6■■□□□ 1.37
HOXC12-201ENST00000243103 MYT1Q01538 1121 aa23.53■■□□□ 1.36
HOXC12-201ENST00000243103 ACIN1Q9UKV3 1341 aaKnown RBP23.52■■□□□ 1.36
HOXC12-201ENST00000243103 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.36■■□□□ 1.33
HOXC12-201ENST00000243103 CENPBP07199 599 aaPredicted RBP23.33■■□□□ 1.33
HOXC12-201ENST00000243103 ZEB1P37275 1124 aaPredicted RBP23.26■■□□□ 1.31
HOXC12-201ENST00000243103 CCER1Q8TC90 406 aaPredicted RBP23.25■■□□□ 1.31
HOXC12-201ENST00000243103 DIEXFQ68CQ4 756 aaKnown RBP23.16■■□□□ 1.3
HOXC12-201ENST00000243103 TRIM41Q8WV44 630 aa23.08■■□□□ 1.28
HOXC12-201ENST00000243103 DCAF1Q9Y4B6 1507 aa23.06■■□□□ 1.28
HOXC12-201ENST00000243103 RANGAP1P46060 587 aaPredicted RBP22.91■■□□□ 1.26
HOXC12-201ENST00000243103 BCL11AQ9H165 835 aa22.91■■□□□ 1.26
HOXC12-201ENST00000243103 ZCCHC6Q5VYS8 1495 aaKnown RBP22.91■■□□□ 1.26
HOXC12-201ENST00000243103 BCANQ96GW7 911 aa22.7■■□□□ 1.22
HOXC12-201ENST00000243103 CCDC180Q9P1Z9 1646 aa22.68■■□□□ 1.22
HOXC12-201ENST00000243103 MIER1Q8N108 512 aa22.58■■□□□ 1.2
HOXC12-201ENST00000243103 CSRNP3Q8WYN3 585 aa22.52■■□□□ 1.2
HOXC12-201ENST00000243103 ABCC9O60706 1549 aa22.45■■□□□ 1.18
HOXC12-201ENST00000243103 ANP32EQ9BTT0 268 aa22.38■■□□□ 1.17
HOXC12-201ENST00000243103 SCRIBQ14160 1630 aa22.38■■□□□ 1.17
HOXC12-201ENST00000243103 ZNF316A6NFI3 1004 aaPredicted RBP22.32■■□□□ 1.16
HOXC12-201ENST00000243103 UBTFP17480 764 aaKnown RBP22.3■■□□□ 1.16
HOXC12-201ENST00000243103 HNRNPUL2Q1KMD3 747 aaKnown RBP22.3■■□□□ 1.16
HOXC12-201ENST00000243103 PABPN1Q86U42 306 aaKnown RBP eCLIP22.25■■□□□ 1.15
HOXC12-201ENST00000243103 TSHZ2Q9NRE2 1034 aa22.19■■□□□ 1.14
HOXC12-201ENST00000243103 PRKCSHP14314 528 aaPredicted RBP22.18■■□□□ 1.14
HOXC12-201ENST00000243103 SUPT16HQ9Y5B9 1047 aaKnown RBP22.18■■□□□ 1.14
HOXC12-201ENST00000243103 ITGAEP38570 1179 aa22.16■■□□□ 1.14
HOXC12-201ENST00000243103 RSF1Q96T23 1441 aaPredicted RBP22.13■■□□□ 1.13
HOXC12-201ENST00000243103 CECR2Q9BXF3 1484 aa22.07■■□□□ 1.12
HOXC12-201ENST00000243103 ERICH6Q7L0X2 663 aa22.05■■□□□ 1.12
HOXC12-201ENST00000243103 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
HOXC12-201ENST00000243103 FKBP8Q14318 412 aa21.96■■□□□ 1.11
HOXC12-201ENST00000243103 KCNH8Q96L42 1107 aa21.87■■□□□ 1.09
HOXC12-201ENST00000243103 CCDC136Q96JN2 1154 aa21.81■■□□□ 1.08
HOXC12-201ENST00000243103 IRX6P78412 446 aaPredicted RBP21.77■■□□□ 1.08
HOXC12-201ENST00000243103 ANO8Q9HCE9 1232 aaPredicted RBP21.76■■□□□ 1.07
HOXC12-201ENST00000243103 RTN4Q9NQC3 1192 aaKnown RBP21.75■■□□□ 1.07
HOXC12-201ENST00000243103 RBM19Q9Y4C8 960 aaKnown RBP21.74■■□□□ 1.07
HOXC12-201ENST00000243103 NBR1Q14596 966 aa21.72■■□□□ 1.07
HOXC12-201ENST00000243103 NEFLP07196 543 aa21.71■■□□□ 1.07
HOXC12-201ENST00000243103 TRIM52Q96A61 297 aa21.7■■□□□ 1.06
HOXC12-201ENST00000243103 ATP1B4Q9UN42 357 aaPredicted RBP21.69■■□□□ 1.06
HOXC12-201ENST00000243103 APLP2Q06481 763 aa21.68■■□□□ 1.06
HOXC12-201ENST00000243103 MROH2BQ7Z745 1585 aa21.68■■□□□ 1.06
HOXC12-201ENST00000243103 ABCC8Q09428 1581 aa21.63■■□□□ 1.05
HOXC12-201ENST00000243103 SOGA1O94964 1423 aa21.6■■□□□ 1.05
HOXC12-201ENST00000243103 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.6■■□□□ 1.05
HOXC12-201ENST00000243103 HIRIP3Q9BW71 556 aaPredicted RBP21.6■■□□□ 1.05
HOXC12-201ENST00000243103 WIZO95785 1651 aa21.55■■□□□ 1.04
HOXC12-201ENST00000243103 RUSC2Q8N2Y8 1516 aa21.52■■□□□ 1.04
HOXC12-201ENST00000243103 CCDC88BA6NC98 1476 aa21.52■■□□□ 1.04
HOXC12-201ENST00000243103 MSH5O43196 834 aa21.52■■□□□ 1.03
HOXC12-201ENST00000243103 DEKP35659 375 aaKnown RBP21.48■■□□□ 1.03
HOXC12-201ENST00000243103 CNGB1Q14028 1251 aaPredicted RBP21.46■■□□□ 1.03
HOXC12-201ENST00000243103 SALL2Q9Y467 1007 aaPredicted RBP21.44■■□□□ 1.02
HOXC12-201ENST00000243103 DDX10Q13206 875 aaKnown RBP21.44■■□□□ 1.02
HOXC12-201ENST00000243103 EIF5BO60841 1220 aaKnown RBP21.38■■□□□ 1.01
HOXC12-201ENST00000243103 CEP162Q5TB80 1403 aa21.38■■□□□ 1.01
HOXC12-201ENST00000243103 P3H3Q8IVL6 736 aa21.38■■□□□ 1.01
HOXC12-201ENST00000243103 SENP3-EIF4A1A0A087X0R7 540 aa21.36■■□□□ 1.01
HOXC12-201ENST00000243103 CDK11AQ9UQ88 783 aaPredicted RBP21.27■■□□□ 1
HOXC12-201ENST00000243103 IL27Q8NEV9 243 aa21.19■□□□□ 0.98
HOXC12-201ENST00000243103 ARID3CA6NKF2 412 aa21.14■□□□□ 0.98
HOXC12-201ENST00000243103 CLSPNQ9HAW4 1339 aa21.14■□□□□ 0.97
HOXC12-201ENST00000243103 KANK4Q5T7N3 995 aaPredicted RBP21.12■□□□□ 0.97
HOXC12-201ENST00000243103 RTL5Q5HYW3 569 aaPredicted RBP21.11■□□□□ 0.97
HOXC12-201ENST00000243103 NPM2Q86SE8 214 aaKnown RBP21.11■□□□□ 0.97
HOXC12-201ENST00000243103 FAM50AQ14320 339 aaKnown RBP21.1■□□□□ 0.97
HOXC12-201ENST00000243103 B4GALNT3Q6L9W6 998 aa21.08■□□□□ 0.96
HOXC12-201ENST00000243103 HNRNPUQ00839 825 aaKnown RBP eCLIP21.07■□□□□ 0.96
HOXC12-201ENST00000243103 WRNQ14191 1432 aaPredicted RBP eCLIP21.02■□□□□ 0.96
HOXC12-201ENST00000243103 PAK3O75914 559 aaPredicted RBP21.02■□□□□ 0.96
HOXC12-201ENST00000243103 CLIP1P30622 1438 aa21■□□□□ 0.95
HOXC12-201ENST00000243103 TNIKQ9UKE5 1360 aa20.98■□□□□ 0.95
HOXC12-201ENST00000243103 LAS1LQ9Y4W2 734 aaKnown RBP20.96■□□□□ 0.95
HOXC12-201ENST00000243103 SIN3AQ96ST3 1273 aa20.94■□□□□ 0.94
HOXC12-201ENST00000243103 ANP32CO43423 234 aa20.93■□□□□ 0.94
HOXC12-201ENST00000243103 BAZ1BQ9UIG0 1483 aaKnown RBP20.9■□□□□ 0.94
HOXC12-201ENST00000243103 NOP58Q9Y2X3 529 aaKnown RBP20.87■□□□□ 0.93
HOXC12-201ENST00000243103 TIMELESSQ9UNS1 1208 aa20.85■□□□□ 0.93
HOXC12-201ENST00000243103 RAPGEF2Q9Y4G8 1499 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms