RNA–Protein interactions for RNA: ENST00000226328.8

RUFY3-201, Transcript of RUN and FYVE domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene RUFY3, Length 4,233 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUFY3-201ENST00000226328 NISCHQ9Y2I1 1504 aa11.72□□□□□ -0.53
RUFY3-201ENST00000226328 CCDC180Q9P1Z9 1646 aa10.51□□□□□ -0.73
RUFY3-201ENST00000226328 DCAF8L2P0C7V8 631 aa10.38□□□□□ -0.75
RUFY3-201ENST00000226328 ABCC9O60706 1549 aa10.12□□□□□ -0.79
RUFY3-201ENST00000226328 MYO15BQ96JP2 1530 aa9.84□□□□□ -0.83
RUFY3-201ENST00000226328 ZCCHC6Q5VYS8 1495 aaKnown RBP9.81□□□□□ -0.84
RUFY3-201ENST00000226328 NACADO15069 1562 aa9.8□□□□□ -0.84
RUFY3-201ENST00000226328 DCAF1Q9Y4B6 1507 aa9.79□□□□□ -0.84
RUFY3-201ENST00000226328 RB1CC1Q8TDY2 1594 aa9.77□□□□□ -0.85
RUFY3-201ENST00000226328 UNC13AQ9UPW8 1703 aa9.64□□□□□ -0.87
RUFY3-201ENST00000226328 PABPN1Q86U42 306 aaKnown RBP eCLIP9.61□□□□□ -0.87
RUFY3-201ENST00000226328 BICRAQ9NZM4 1560 aa9.55□□□□□ -0.88
RUFY3-201ENST00000226328 SHROOM4Q9ULL8 1493 aa9.49□□□□□ -0.89
RUFY3-201ENST00000226328 SCRIBQ14160 1630 aa9.45□□□□□ -0.9
RUFY3-201ENST00000226328 EIF4G1Q04637 1599 aaKnown RBP9.23□□□□□ -0.93
RUFY3-201ENST00000226328 DNAJC5BQ9UF47 199 aa9.19□□□□□ -0.94
RUFY3-201ENST00000226328 CC2D2AQ9P2K1 1620 aa9.18□□□□□ -0.94
RUFY3-201ENST00000226328 SUPT5HO00267 1087 aaKnown RBP9.17□□□□□ -0.94
RUFY3-201ENST00000226328 SMARCA4P51532 1647 aa9.11□□□□□ -0.95
RUFY3-201ENST00000226328 PEG3Q9GZU2 1588 aa9.1□□□□□ -0.95
RUFY3-201ENST00000226328 CECR2Q9BXF3 1484 aa9.1□□□□□ -0.95
RUFY3-201ENST00000226328 BAZ1AQ9NRL2 1556 aaPredicted RBP9.07□□□□□ -0.96
RUFY3-201ENST00000226328 HMGXB3Q12766 1538 aa9.03□□□□□ -0.96
RUFY3-201ENST00000226328 NCAPD3P42695 1498 aa9.03□□□□□ -0.96
RUFY3-201ENST00000226328 SMARCA2P51531 1590 aa9.01□□□□□ -0.97
RUFY3-201ENST00000226328 MROH2BQ7Z745 1585 aa9.01□□□□□ -0.97
RUFY3-201ENST00000226328 ATAD2BQ9ULI0 1458 aa9.01□□□□□ -0.97
RUFY3-201ENST00000226328 ERCC6Q03468 1493 aa8.98□□□□□ -0.97
RUFY3-201ENST00000226328 BAZ1BQ9UIG0 1483 aaKnown RBP8.98□□□□□ -0.97
RUFY3-201ENST00000226328 WIZO95785 1651 aa8.92□□□□□ -0.98
RUFY3-201ENST00000226328 FAM9AQ8IZU1 332 aaPredicted RBP8.91□□□□□ -0.98
RUFY3-201ENST00000226328 RSF1Q96T23 1441 aaPredicted RBP8.9□□□□□ -0.98
RUFY3-201ENST00000226328 TOP2AP11388 1531 aaKnown RBP8.86□□□□□ -0.99
RUFY3-201ENST00000226328 PDS5BQ9NTI5 1447 aa8.86□□□□□ -0.99
RUFY3-201ENST00000226328 LAMC3Q9Y6N6 1575 aa8.79□□□□□ -1
RUFY3-201ENST00000226328 CADPSQ9ULU8 1353 aa8.76□□□□□ -1.01
RUFY3-201ENST00000226328 PRDM2Q13029 1718 aa8.75□□□□□ -1.01
RUFY3-201ENST00000226328 FBLN2P98095 1184 aa8.75□□□□□ -1.01
RUFY3-201ENST00000226328 NESP48681 1621 aa8.73□□□□□ -1.01
RUFY3-201ENST00000226328 THOC2Q8NI27 1593 aaKnown RBP8.72□□□□□ -1.01
RUFY3-201ENST00000226328 CFTRP13569 1480 aa8.71□□□□□ -1.01
RUFY3-201ENST00000226328 KIF21AQ7Z4S6 1674 aa8.71□□□□□ -1.02
RUFY3-201ENST00000226328 CCDC88BA6NC98 1476 aa8.7□□□□□ -1.02
RUFY3-201ENST00000226328 TRIM41Q8WV44 630 aa8.69□□□□□ -1.02
RUFY3-201ENST00000226328 CEP164Q9UPV0 1460 aa8.68□□□□□ -1.02
RUFY3-201ENST00000226328 CUX2O14529 1486 aa8.65□□□□□ -1.02
RUFY3-201ENST00000226328 WDR62O43379 1518 aa8.64□□□□□ -1.03
RUFY3-201ENST00000226328 CHMP7Q8WUX9 453 aaPredicted RBP8.63□□□□□ -1.03
RUFY3-201ENST00000226328 FANCD2Q9BXW9 1451 aa8.62□□□□□ -1.03
RUFY3-201ENST00000226328 ABCC8Q09428 1581 aa8.61□□□□□ -1.03
RUFY3-201ENST00000226328 MRC2Q9UBG0 1479 aa8.6□□□□□ -1.03
RUFY3-201ENST00000226328 OSCARQ8IYS5 282 aa8.57□□□□□ -1.04
RUFY3-201ENST00000226328 URB2Q14146 1524 aaKnown RBP8.56□□□□□ -1.04
RUFY3-201ENST00000226328 EHMT2Q96KQ7 1210 aa8.56□□□□□ -1.04
RUFY3-201ENST00000226328 NPM1P06748 294 aaKnown RBP eCLIP8.55□□□□□ -1.04
RUFY3-201ENST00000226328 SLC24A1O60721 1099 aa8.55□□□□□ -1.04
RUFY3-201ENST00000226328 DNMBPQ6XZF7 1577 aa8.52□□□□□ -1.04
RUFY3-201ENST00000226328 TTBK1Q5TCY1 1321 aaPredicted RBP8.51□□□□□ -1.05
RUFY3-201ENST00000226328 SOGA1O94964 1423 aa8.51□□□□□ -1.05
RUFY3-201ENST00000226328 WRNQ14191 1432 aaPredicted RBP eCLIP8.51□□□□□ -1.05
RUFY3-201ENST00000226328 UBTFP17480 764 aaKnown RBP8.5□□□□□ -1.05
RUFY3-201ENST00000226328 TOPBP1Q92547 1522 aa8.5□□□□□ -1.05
RUFY3-201ENST00000226328 TARBP1Q13395 1621 aaKnown RBP8.48□□□□□ -1.05
RUFY3-201ENST00000226328 WDR97A6NE52 1622 aa8.47□□□□□ -1.05
RUFY3-201ENST00000226328 CUX1P39880 1505 aa8.47□□□□□ -1.05
RUFY3-201ENST00000226328 BIVM-ERCC5R4GMW8 1640 aa8.47□□□□□ -1.05
RUFY3-201ENST00000226328 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.46□□□□□ -1.05
RUFY3-201ENST00000226328 RANGAP1P46060 587 aaPredicted RBP8.46□□□□□ -1.05
RUFY3-201ENST00000226328 HNRNPUL2Q1KMD3 747 aaKnown RBP8.46□□□□□ -1.05
RUFY3-201ENST00000226328 IFT140Q96RY7 1462 aa8.46□□□□□ -1.05
RUFY3-201ENST00000226328 ATP1B4Q9UN42 357 aaPredicted RBP8.46□□□□□ -1.05
RUFY3-201ENST00000226328 APLP2Q06481 763 aa8.46□□□□□ -1.06
RUFY3-201ENST00000226328 TDRD9Q8NDG6 1382 aaKnown RBP8.44□□□□□ -1.06
RUFY3-201ENST00000226328 TRHP20396 242 aaPredicted RBP8.43□□□□□ -1.06
RUFY3-201ENST00000226328 TOP2BQ02880 1626 aa8.43□□□□□ -1.06
RUFY3-201ENST00000226328 KIF27Q86VH2 1401 aa8.42□□□□□ -1.06
RUFY3-201ENST00000226328 POLA1P09884 1462 aaPredicted RBP8.42□□□□□ -1.06
RUFY3-201ENST00000226328 SYNJ1O43426 1573 aa8.41□□□□□ -1.06
RUFY3-201ENST00000226328 EIF4G3O43432 1585 aaKnown RBP8.4□□□□□ -1.06
RUFY3-201ENST00000226328 FGD5Q6ZNL6 1462 aa8.39□□□□□ -1.07
RUFY3-201ENST00000226328 ABCA5Q8WWZ7 1642 aa8.37□□□□□ -1.07
RUFY3-201ENST00000226328 DNAJC5Q9H3Z4 198 aa8.37□□□□□ -1.07
RUFY3-201ENST00000226328 ZNF608Q9ULD9 1512 aaPredicted RBP8.37□□□□□ -1.07
RUFY3-201ENST00000226328 CYB5RLQ6IPT4 315 aa8.37□□□□□ -1.07
RUFY3-201ENST00000226328 CSRNP3Q8WYN3 585 aa8.36□□□□□ -1.07
RUFY3-201ENST00000226328 ABCA10Q8WWZ4 1543 aa8.36□□□□□ -1.07
RUFY3-201ENST00000226328 GRIN2BQ13224 1484 aa8.35□□□□□ -1.07
RUFY3-201ENST00000226328 GAPVD1Q14C86 1478 aa8.34□□□□□ -1.07
RUFY3-201ENST00000226328 RAD54L2Q9Y4B4 1467 aa8.34□□□□□ -1.07
RUFY3-201ENST00000226328 PBRM1Q86U86 1689 aa8.34□□□□□ -1.07
RUFY3-201ENST00000226328 MYT1LQ9UL68 1186 aa8.34□□□□□ -1.08
RUFY3-201ENST00000226328 AQRO60306 1485 aaKnown RBP eCLIP8.33□□□□□ -1.082e-6■■■□□ 18.3
RUFY3-201ENST00000226328 CARMIL2Q6F5E8 1435 aa8.31□□□□□ -1.08
RUFY3-201ENST00000226328 CDK11AQ9UQ88 783 aaPredicted RBP8.3□□□□□ -1.08
RUFY3-201ENST00000226328 CARMIL1Q5VZK9 1371 aa8.3□□□□□ -1.08
RUFY3-201ENST00000226328 CHIC1Q5VXU3 224 aa8.3□□□□□ -1.08
RUFY3-201ENST00000226328 EEA1Q15075 1411 aa8.29□□□□□ -1.08
RUFY3-201ENST00000226328 CHD1O14646 1710 aa8.28□□□□□ -1.08
RUFY3-201ENST00000226328 JPH4Q96JJ6 628 aa8.28□□□□□ -1.08
RUFY3-201ENST00000226328 MAGI1Q96QZ7 1491 aaPredicted RBP8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms