RNA–Protein interactions for RNA: ENST00000226218.8

VTN-201, Transcript of vitronectin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTN, Length 2,149 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTN-201ENST00000226218 NISCHQ9Y2I1 1504 aa30.89■■■□□ 2.54
VTN-201ENST00000226218 SHROOM4Q9ULL8 1493 aa26.51■■□□□ 1.83
VTN-201ENST00000226218 ZCCHC6Q5VYS8 1495 aaKnown RBP26.28■■□□□ 1.8
VTN-201ENST00000226218 SUPT5HO00267 1087 aaKnown RBP26.2■■□□□ 1.79
VTN-201ENST00000226218 CCDC180Q9P1Z9 1646 aa26.11■■□□□ 1.77
VTN-201ENST00000226218 MYO15BQ96JP2 1530 aa26.03■■□□□ 1.76
VTN-201ENST00000226218 HRCP23327 699 aa26■■□□□ 1.75
VTN-201ENST00000226218 CHIC1Q5VXU3 224 aa25.88■■□□□ 1.73
VTN-201ENST00000226218 PCGF6Q9BYE7 350 aa25.51■■□□□ 1.67
VTN-201ENST00000226218 DCAF1Q9Y4B6 1507 aa25.5■■□□□ 1.67
VTN-201ENST00000226218 PPARGC1BQ86YN6 1023 aaKnown RBP25.3■■□□□ 1.64
VTN-201ENST00000226218 DCAF8L2P0C7V8 631 aa25.1■■□□□ 1.61
VTN-201ENST00000226218 LOC105371045A0A1W2PR82 267 aa25.06■■□□□ 1.6
VTN-201ENST00000226218 TRIM26Q12899 539 aaPredicted RBP24.97■■□□□ 1.59
VTN-201ENST00000226218 ABCC9O60706 1549 aa24.93■■□□□ 1.58
VTN-201ENST00000226218 ZEB1P37275 1124 aaPredicted RBP24.66■■□□□ 1.54
VTN-201ENST00000226218 RSF1Q96T23 1441 aaPredicted RBP24.62■■□□□ 1.53
VTN-201ENST00000226218 RB1CC1Q8TDY2 1594 aa24.49■■□□□ 1.51
VTN-201ENST00000226218 SCRIBQ14160 1630 aa24.44■■□□□ 1.5
VTN-201ENST00000226218 PELP1Q8IZL8 1130 aaKnown RBP24.42■■□□□ 1.5
VTN-201ENST00000226218 TRIM41Q8WV44 630 aa24.4■■□□□ 1.5
VTN-201ENST00000226218 SCAF1Q9H7N4 1312 aaKnown RBP24.28■■□□□ 1.48
VTN-201ENST00000226218 FAM9AQ8IZU1 332 aaPredicted RBP24.17■■□□□ 1.46
VTN-201ENST00000226218 MROH2BQ7Z745 1585 aa24.03■■□□□ 1.44
VTN-201ENST00000226218 CECR2Q9BXF3 1484 aa24.03■■□□□ 1.44
VTN-201ENST00000226218 EIF4G1Q04637 1599 aaKnown RBP24.01■■□□□ 1.43
VTN-201ENST00000226218 WIZO95785 1651 aa23.96■■□□□ 1.43
VTN-201ENST00000226218 NACADO15069 1562 aa23.93■■□□□ 1.42
VTN-201ENST00000226218 BAZ1AQ9NRL2 1556 aaPredicted RBP23.9■■□□□ 1.42
VTN-201ENST00000226218 EHMT2Q96KQ7 1210 aa23.87■■□□□ 1.41
VTN-201ENST00000226218 ACIN1Q9UKV3 1341 aaKnown RBP23.86■■□□□ 1.41
VTN-201ENST00000226218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.81■■□□□ 1.4
VTN-201ENST00000226218 WRNQ14191 1432 aaPredicted RBP eCLIP23.78■■□□□ 1.4
VTN-201ENST00000226218 NEUROD1Q13562 356 aa23.76■■□□□ 1.39
VTN-201ENST00000226218 CCER1Q8TC90 406 aaPredicted RBP23.74■■□□□ 1.39
VTN-201ENST00000226218 DIEXFQ68CQ4 756 aaKnown RBP23.63■■□□□ 1.37
VTN-201ENST00000226218 TOP2AP11388 1531 aaKnown RBP23.6■■□□□ 1.37
VTN-201ENST00000226218 ABCC8Q09428 1581 aa23.57■■□□□ 1.36
VTN-201ENST00000226218 CCDC88BA6NC98 1476 aa23.56■■□□□ 1.36
VTN-201ENST00000226218 CEP162Q5TB80 1403 aa23.56■■□□□ 1.36
VTN-201ENST00000226218 CENPBP07199 599 aaPredicted RBP23.56■■□□□ 1.36
VTN-201ENST00000226218 GTF3C3Q9Y5Q9 886 aa23.54■■□□□ 1.36
VTN-201ENST00000226218 TNIKQ9UKE5 1360 aa23.51■■□□□ 1.35
VTN-201ENST00000226218 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
VTN-201ENST00000226218 SMARCA4P51532 1647 aa23.45■■□□□ 1.34
VTN-201ENST00000226218 EEA1Q15075 1411 aa23.42■■□□□ 1.34
VTN-201ENST00000226218 SOGA1O94964 1423 aa23.41■■□□□ 1.34
VTN-201ENST00000226218 ZNF316A6NFI3 1004 aaPredicted RBP23.35■■□□□ 1.33
VTN-201ENST00000226218 MYT1Q01538 1121 aa23.35■■□□□ 1.33
VTN-201ENST00000226218 RUSC2Q8N2Y8 1516 aa23.3■■□□□ 1.32
VTN-201ENST00000226218 GOLGA3Q08378 1498 aa23.28■■□□□ 1.32
VTN-201ENST00000226218 TTBK1Q5TCY1 1321 aaPredicted RBP23.27■■□□□ 1.32
VTN-201ENST00000226218 CSRNP3Q8WYN3 585 aa23.26■■□□□ 1.31
VTN-201ENST00000226218 UNC13AQ9UPW8 1703 aa23.24■■□□□ 1.31
VTN-201ENST00000226218 KIF21BO75037 1637 aa23.17■■□□□ 1.3
VTN-201ENST00000226218 UBTFP17480 764 aaKnown RBP23.12■■□□□ 1.29
VTN-201ENST00000226218 CEP164Q9UPV0 1460 aa23.09■■□□□ 1.29
VTN-201ENST00000226218 MIER1Q8N108 512 aa23.07■■□□□ 1.28
VTN-201ENST00000226218 SYNJ1O43426 1573 aa23.03■■□□□ 1.28
VTN-201ENST00000226218 PEG3Q9GZU2 1588 aa23.03■■□□□ 1.28
VTN-201ENST00000226218 YTHDC1Q96MU7 727 aaKnown RBP23.01■■□□□ 1.27
VTN-201ENST00000226218 VPS8Q8N3P4 1428 aa23.01■■□□□ 1.27
VTN-201ENST00000226218 CLIP1P30622 1438 aa22.99■■□□□ 1.27
VTN-201ENST00000226218 BAZ1BQ9UIG0 1483 aaKnown RBP22.99■■□□□ 1.27
VTN-201ENST00000226218 HNRNPUL2Q1KMD3 747 aaKnown RBP22.94■■□□□ 1.26
VTN-201ENST00000226218 BICRAQ9NZM4 1560 aa22.85■■□□□ 1.25
VTN-201ENST00000226218 RAPGEF2Q9Y4G8 1499 aa22.85■■□□□ 1.25
VTN-201ENST00000226218 CLSPNQ9HAW4 1339 aa22.81■■□□□ 1.24
VTN-201ENST00000226218 DHX57Q6P158 1386 aaKnown RBP22.75■■□□□ 1.23
VTN-201ENST00000226218 TOP2BQ02880 1626 aa22.71■■□□□ 1.23
VTN-201ENST00000226218 APLP2Q06481 763 aa22.69■■□□□ 1.22
VTN-201ENST00000226218 ERICH3Q5RHP9 1530 aa22.68■■□□□ 1.22
VTN-201ENST00000226218 BIVM-ERCC5R4GMW8 1640 aa22.67■■□□□ 1.22
VTN-201ENST00000226218 ATAD2BQ9ULI0 1458 aa22.65■■□□□ 1.22
VTN-201ENST00000226218 ARAP1Q96P48 1450 aa22.65■■□□□ 1.22
VTN-201ENST00000226218 CUX2O14529 1486 aa22.62■■□□□ 1.21
VTN-201ENST00000226218 PRXQ9BXM0 1461 aa22.6■■□□□ 1.21
VTN-201ENST00000226218 SUPT16HQ9Y5B9 1047 aaKnown RBP22.6■■□□□ 1.21
VTN-201ENST00000226218 RRBP1Q9P2E9 1410 aaKnown RBP22.6■■□□□ 1.21
VTN-201ENST00000226218 PABPN1Q86U42 306 aaKnown RBP eCLIP22.53■■□□□ 1.2
VTN-201ENST00000226218 KANK4Q5T7N3 995 aaPredicted RBP22.48■■□□□ 1.19
VTN-201ENST00000226218 RANGAP1P46060 587 aaPredicted RBP22.43■■□□□ 1.18
VTN-201ENST00000226218 TSHZ2Q9NRE2 1034 aa22.39■■□□□ 1.18
VTN-201ENST00000226218 CCNB3Q8WWL7 1395 aa22.38■■□□□ 1.17
VTN-201ENST00000226218 MAPKBP1O60336 1514 aa22.37■■□□□ 1.17
VTN-201ENST00000226218 ARHGAP35Q9NRY4 1499 aa22.35■■□□□ 1.17
VTN-201ENST00000226218 CUX1P39880 1505 aa22.35■■□□□ 1.17
VTN-201ENST00000226218 KIF27Q86VH2 1401 aa22.28■■□□□ 1.16
VTN-201ENST00000226218 MAP3K1Q13233 1512 aa22.27■■□□□ 1.16
VTN-201ENST00000226218 RAB3GAP2Q9H2M9 1393 aa22.25■■□□□ 1.15
VTN-201ENST00000226218 TIAM1Q13009 1591 aa22.23■■□□□ 1.15
VTN-201ENST00000226218 KCNH8Q96L42 1107 aa22.22■■□□□ 1.15
VTN-201ENST00000226218 HMGXB3Q12766 1538 aa22.22■■□□□ 1.15
VTN-201ENST00000226218 ANP32EQ9BTT0 268 aa22.21■■□□□ 1.15
VTN-201ENST00000226218 WDR97A6NE52 1622 aa22.17■■□□□ 1.14
VTN-201ENST00000226218 SETD5Q9C0A6 1442 aa22.14■■□□□ 1.14
VTN-201ENST00000226218 NCAPD3P42695 1498 aa22.13■■□□□ 1.13
VTN-201ENST00000226218 PRDM2Q13029 1718 aa22.12■■□□□ 1.13
VTN-201ENST00000226218 CFTRP13569 1480 aa22.11■■□□□ 1.13
VTN-201ENST00000226218 CFAP43Q8NDM7 1665 aa22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms