RNA–Protein interactions for RNA: ENST00000216492.9

CHGA-201, Transcript of chromogranin A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHGA, Length 2,063 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHGA-201ENST00000216492 NISCHQ9Y2I1 1504 aa37.88■■■■□ 3.65
CHGA-201ENST00000216492 CCDC180Q9P1Z9 1646 aa32.88■■■□□ 2.85
CHGA-201ENST00000216492 ZCCHC6Q5VYS8 1495 aaKnown RBP31.78■■■□□ 2.68
CHGA-201ENST00000216492 DCAF8L2P0C7V8 631 aa31.55■■■□□ 2.64
CHGA-201ENST00000216492 ABCC9O60706 1549 aa31.33■■■□□ 2.61
CHGA-201ENST00000216492 DCAF1Q9Y4B6 1507 aa31.27■■■□□ 2.6
CHGA-201ENST00000216492 SHROOM4Q9ULL8 1493 aa31.01■■■□□ 2.56
CHGA-201ENST00000216492 MYO15BQ96JP2 1530 aa30.92■■■□□ 2.54
CHGA-201ENST00000216492 NACADO15069 1562 aa30.75■■■□□ 2.51
CHGA-201ENST00000216492 RB1CC1Q8TDY2 1594 aa30.48■■■□□ 2.47
CHGA-201ENST00000216492 SCRIBQ14160 1630 aa30.35■■■□□ 2.45
CHGA-201ENST00000216492 SUPT5HO00267 1087 aaKnown RBP29.9■■■□□ 2.38
CHGA-201ENST00000216492 UNC13AQ9UPW8 1703 aa29.74■■■□□ 2.35
CHGA-201ENST00000216492 PABPN1Q86U42 306 aaKnown RBP eCLIP29.65■■■□□ 2.34
CHGA-201ENST00000216492 BICRAQ9NZM4 1560 aa29.55■■■□□ 2.32
CHGA-201ENST00000216492 CECR2Q9BXF3 1484 aa29.49■■■□□ 2.31
CHGA-201ENST00000216492 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
CHGA-201ENST00000216492 MROH2BQ7Z745 1585 aa29.28■■■□□ 2.28
CHGA-201ENST00000216492 BAZ1AQ9NRL2 1556 aaPredicted RBP29.23■■■□□ 2.27
CHGA-201ENST00000216492 SMARCA4P51532 1647 aa29.06■■■□□ 2.24
CHGA-201ENST00000216492 WIZO95785 1651 aa28.99■■■□□ 2.23
CHGA-201ENST00000216492 PEG3Q9GZU2 1588 aa28.71■■■□□ 2.19
CHGA-201ENST00000216492 EIF4G1Q04637 1599 aaKnown RBP28.69■■■□□ 2.18
CHGA-201ENST00000216492 ATAD2BQ9ULI0 1458 aa28.68■■■□□ 2.18
CHGA-201ENST00000216492 TOP2AP11388 1531 aaKnown RBP28.68■■■□□ 2.18
CHGA-201ENST00000216492 SMARCA2P51531 1590 aa28.61■■■□□ 2.17
CHGA-201ENST00000216492 CHIC1Q5VXU3 224 aa28.57■■■□□ 2.16
CHGA-201ENST00000216492 BAZ1BQ9UIG0 1483 aaKnown RBP28.51■■■□□ 2.15
CHGA-201ENST00000216492 CCDC88BA6NC98 1476 aa28.47■■■□□ 2.15
CHGA-201ENST00000216492 NCAPD3P42695 1498 aa28.45■■■□□ 2.14
CHGA-201ENST00000216492 HMGXB3Q12766 1538 aa28.31■■■□□ 2.12
CHGA-201ENST00000216492 CC2D2AQ9P2K1 1620 aa28.27■■■□□ 2.12
CHGA-201ENST00000216492 TRIM41Q8WV44 630 aa28.1■■■□□ 2.09
CHGA-201ENST00000216492 ABCC8Q09428 1581 aa27.83■■■□□ 2.04
CHGA-201ENST00000216492 CFTRP13569 1480 aa27.8■■■□□ 2.04
CHGA-201ENST00000216492 DNAJC5BQ9UF47 199 aa27.76■■■□□ 2.03
CHGA-201ENST00000216492 CADPSQ9ULU8 1353 aa27.76■■■□□ 2.03
CHGA-201ENST00000216492 WRNQ14191 1432 aaPredicted RBP eCLIP27.7■■■□□ 2.03
CHGA-201ENST00000216492 FAM9AQ8IZU1 332 aaPredicted RBP27.61■■■□□ 2.01
CHGA-201ENST00000216492 LOC105371045A0A1W2PR82 267 aa27.53■■■□□ 2
CHGA-201ENST00000216492 SYNJ1O43426 1573 aa27.5■■□□□ 1.99
CHGA-201ENST00000216492 NESP48681 1621 aa27.48■■□□□ 1.99
CHGA-201ENST00000216492 PRDM2Q13029 1718 aa27.42■■□□□ 1.98
CHGA-201ENST00000216492 LAMC3Q9Y6N6 1575 aa27.41■■□□□ 1.98
CHGA-201ENST00000216492 FANCD2Q9BXW9 1451 aa27.41■■□□□ 1.98
CHGA-201ENST00000216492 TOP2BQ02880 1626 aa27.38■■□□□ 1.97
CHGA-201ENST00000216492 SOGA1O94964 1423 aa27.38■■□□□ 1.97
CHGA-201ENST00000216492 CUX1P39880 1505 aa27.36■■□□□ 1.97
CHGA-201ENST00000216492 BIVM-ERCC5R4GMW8 1640 aa27.3■■□□□ 1.96
CHGA-201ENST00000216492 PDS5BQ9NTI5 1447 aa27.3■■□□□ 1.96
CHGA-201ENST00000216492 EEA1Q15075 1411 aa27.27■■□□□ 1.96
CHGA-201ENST00000216492 RUSC2Q8N2Y8 1516 aa27.26■■□□□ 1.95
CHGA-201ENST00000216492 CSRNP3Q8WYN3 585 aa27.25■■□□□ 1.95
CHGA-201ENST00000216492 EHMT2Q96KQ7 1210 aa27.25■■□□□ 1.95
CHGA-201ENST00000216492 CEP164Q9UPV0 1460 aa27.21■■□□□ 1.95
CHGA-201ENST00000216492 PCGF6Q9BYE7 350 aa27.09■■□□□ 1.93
CHGA-201ENST00000216492 TOPBP1Q92547 1522 aa27.08■■□□□ 1.93
CHGA-201ENST00000216492 DNMBPQ6XZF7 1577 aa27.08■■□□□ 1.93
CHGA-201ENST00000216492 HRCP23327 699 aa27.08■■□□□ 1.93
CHGA-201ENST00000216492 FGD5Q6ZNL6 1462 aa27.08■■□□□ 1.93
CHGA-201ENST00000216492 URB2Q14146 1524 aaKnown RBP27.04■■□□□ 1.92
CHGA-201ENST00000216492 KIF27Q86VH2 1401 aa27.02■■□□□ 1.92
CHGA-201ENST00000216492 KIF21AQ7Z4S6 1674 aa27.01■■□□□ 1.91
CHGA-201ENST00000216492 POLA1P09884 1462 aaPredicted RBP26.96■■□□□ 1.91
CHGA-201ENST00000216492 CUX2O14529 1486 aa26.94■■□□□ 1.9
CHGA-201ENST00000216492 UBTFP17480 764 aaKnown RBP26.93■■□□□ 1.9
CHGA-201ENST00000216492 RAD54L2Q9Y4B4 1467 aa26.91■■□□□ 1.9
CHGA-201ENST00000216492 MRC2Q9UBG0 1479 aa26.89■■□□□ 1.89
CHGA-201ENST00000216492 GOLGA3Q08378 1498 aa26.88■■□□□ 1.89
CHGA-201ENST00000216492 ERCC6Q03468 1493 aa26.87■■□□□ 1.89
CHGA-201ENST00000216492 TNIKQ9UKE5 1360 aa26.85■■□□□ 1.89
CHGA-201ENST00000216492 ABCA10Q8WWZ4 1543 aa26.83■■□□□ 1.89
CHGA-201ENST00000216492 IGF1RP08069 1367 aa26.82■■□□□ 1.88
CHGA-201ENST00000216492 KIF21BO75037 1637 aa26.82■■□□□ 1.88
CHGA-201ENST00000216492 PRXQ9BXM0 1461 aa26.8■■□□□ 1.88
CHGA-201ENST00000216492 RAPGEF2Q9Y4G8 1499 aa26.79■■□□□ 1.88
CHGA-201ENST00000216492 TRIM26Q12899 539 aaPredicted RBP26.78■■□□□ 1.88
CHGA-201ENST00000216492 TDRD9Q8NDG6 1382 aaKnown RBP26.71■■□□□ 1.87
CHGA-201ENST00000216492 WDR62O43379 1518 aa26.7■■□□□ 1.87
CHGA-201ENST00000216492 CARMIL1Q5VZK9 1371 aa26.68■■□□□ 1.86
CHGA-201ENST00000216492 ERICH3Q5RHP9 1530 aa26.68■■□□□ 1.86
CHGA-201ENST00000216492 CEP162Q5TB80 1403 aa26.68■■□□□ 1.86
CHGA-201ENST00000216492 TARBP1Q13395 1621 aaKnown RBP26.62■■□□□ 1.85
CHGA-201ENST00000216492 GAPVD1Q14C86 1478 aa26.6■■□□□ 1.85
CHGA-201ENST00000216492 WDR97A6NE52 1622 aa26.6■■□□□ 1.85
CHGA-201ENST00000216492 THOC2Q8NI27 1593 aaKnown RBP26.58■■□□□ 1.85
CHGA-201ENST00000216492 IFT140Q96RY7 1462 aa26.57■■□□□ 1.84
CHGA-201ENST00000216492 ABCA5Q8WWZ7 1642 aa26.54■■□□□ 1.84
CHGA-201ENST00000216492 RANGAP1P46060 587 aaPredicted RBP26.53■■□□□ 1.84
CHGA-201ENST00000216492 AQRO60306 1485 aaKnown RBP eCLIP26.51■■□□□ 1.84
CHGA-201ENST00000216492 CLIP1P30622 1438 aa26.49■■□□□ 1.83
CHGA-201ENST00000216492 ZNF608Q9ULD9 1512 aaPredicted RBP26.46■■□□□ 1.83
CHGA-201ENST00000216492 CUL7Q14999 1698 aa26.43■■□□□ 1.82
CHGA-201ENST00000216492 GRIN2BQ13224 1484 aa26.39■■□□□ 1.81
CHGA-201ENST00000216492 FHAD1B1AJZ9 1412 aa26.32■■□□□ 1.8
CHGA-201ENST00000216492 PPARGC1BQ86YN6 1023 aaKnown RBP26.31■■□□□ 1.8
CHGA-201ENST00000216492 PBRM1Q86U86 1689 aa26.29■■□□□ 1.8
CHGA-201ENST00000216492 EIF4G3O43432 1585 aaKnown RBP26.25■■□□□ 1.79
CHGA-201ENST00000216492 ZEB1P37275 1124 aaPredicted RBP26.25■■□□□ 1.79
CHGA-201ENST00000216492 VPS8Q8N3P4 1428 aa26.24■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms