RNA–Protein interactions for RNA: ENST00000191018.9

CTSA-201, Transcript of cathepsin A, humanhuman

TSL 1 (best) BASIC

Gene CTSA, Length 1,898 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-201ENST00000191018 NISCHQ9Y2I1 1504 aa41.57■■■■■ 4.25
CTSA-201ENST00000191018 CCDC180Q9P1Z9 1646 aa36.13■■■■□ 3.37
CTSA-201ENST00000191018 ZCCHC6Q5VYS8 1495 aaKnown RBP35■■■■□ 3.19
CTSA-201ENST00000191018 DCAF1Q9Y4B6 1507 aa34.39■■■■□ 3.1
CTSA-201ENST00000191018 DCAF8L2P0C7V8 631 aa34.12■■■■□ 3.05
CTSA-201ENST00000191018 SHROOM4Q9ULL8 1493 aa34.07■■■■□ 3.04
CTSA-201ENST00000191018 MYO15BQ96JP2 1530 aa33.87■■■■□ 3.01
CTSA-201ENST00000191018 ABCC9O60706 1549 aa33.82■■■■□ 3
CTSA-201ENST00000191018 NACADO15069 1562 aa33.54■■■□□ 2.96
CTSA-201ENST00000191018 SCRIBQ14160 1630 aa33.24■■■□□ 2.91
CTSA-201ENST00000191018 RB1CC1Q8TDY2 1594 aa33.17■■■□□ 2.9
CTSA-201ENST00000191018 SUPT5HO00267 1087 aaKnown RBP32.91■■■□□ 2.86
CTSA-201ENST00000191018 UNC13AQ9UPW8 1703 aa32.62■■■□□ 2.81
CTSA-201ENST00000191018 RSF1Q96T23 1441 aaPredicted RBP32.36■■■□□ 2.77
CTSA-201ENST00000191018 CECR2Q9BXF3 1484 aa32.28■■■□□ 2.76
CTSA-201ENST00000191018 BICRAQ9NZM4 1560 aa32.22■■■□□ 2.75
CTSA-201ENST00000191018 MROH2BQ7Z745 1585 aa32.14■■■□□ 2.74
CTSA-201ENST00000191018 BAZ1AQ9NRL2 1556 aaPredicted RBP32.07■■■□□ 2.72
CTSA-201ENST00000191018 PABPN1Q86U42 306 aaKnown RBP eCLIP31.93■■■□□ 2.71e-6■■□□□ 12.3
CTSA-201ENST00000191018 WIZO95785 1651 aa31.91■■■□□ 2.7
CTSA-201ENST00000191018 SMARCA4P51532 1647 aa31.91■■■□□ 2.7
CTSA-201ENST00000191018 CHIC1Q5VXU3 224 aa31.72■■■□□ 2.67
CTSA-201ENST00000191018 TOP2AP11388 1531 aaKnown RBP31.56■■■□□ 2.64
CTSA-201ENST00000191018 PEG3Q9GZU2 1588 aa31.53■■■□□ 2.64
CTSA-201ENST00000191018 SMARCA2P51531 1590 aa31.3■■■□□ 2.6
CTSA-201ENST00000191018 ATAD2BQ9ULI0 1458 aa31.28■■■□□ 2.6
CTSA-201ENST00000191018 CCDC88BA6NC98 1476 aa31.24■■■□□ 2.59
CTSA-201ENST00000191018 EIF4G1Q04637 1599 aaKnown RBP31.21■■■□□ 2.59
CTSA-201ENST00000191018 BAZ1BQ9UIG0 1483 aaKnown RBP31.1■■■□□ 2.57
CTSA-201ENST00000191018 NCAPD3P42695 1498 aa30.96■■■□□ 2.55
CTSA-201ENST00000191018 HMGXB3Q12766 1538 aa30.96■■■□□ 2.55
CTSA-201ENST00000191018 TRIM41Q8WV44 630 aa30.93■■■□□ 2.54
CTSA-201ENST00000191018 ABCC8Q09428 1581 aa30.69■■■□□ 2.5
CTSA-201ENST00000191018 CC2D2AQ9P2K1 1620 aa30.66■■■□□ 2.5
CTSA-201ENST00000191018 LOC105371045A0A1W2PR82 267 aa30.5■■■□□ 2.47
CTSA-201ENST00000191018 WRNQ14191 1432 aaPredicted RBP eCLIP30.43■■■□□ 2.46
CTSA-201ENST00000191018 FAM9AQ8IZU1 332 aaPredicted RBP30.36■■■□□ 2.45
CTSA-201ENST00000191018 CFTRP13569 1480 aa30.36■■■□□ 2.45
CTSA-201ENST00000191018 SYNJ1O43426 1573 aa30.34■■■□□ 2.45
CTSA-201ENST00000191018 PRDM2Q13029 1718 aa30.29■■■□□ 2.44
CTSA-201ENST00000191018 TOP2BQ02880 1626 aa30.19■■■□□ 2.42
CTSA-201ENST00000191018 BIVM-ERCC5R4GMW8 1640 aa30.17■■■□□ 2.42
CTSA-201ENST00000191018 SOGA1O94964 1423 aa30.17■■■□□ 2.42
CTSA-201ENST00000191018 EEA1Q15075 1411 aa30.16■■■□□ 2.42
CTSA-201ENST00000191018 CADPSQ9ULU8 1353 aa30.16■■■□□ 2.42
CTSA-201ENST00000191018 RUSC2Q8N2Y8 1516 aa30.06■■■□□ 2.4
CTSA-201ENST00000191018 CUX1P39880 1505 aa30.02■■■□□ 2.4
CTSA-201ENST00000191018 CSRNP3Q8WYN3 585 aa29.94■■■□□ 2.38
CTSA-201ENST00000191018 EHMT2Q96KQ7 1210 aa29.9■■■□□ 2.38
CTSA-201ENST00000191018 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
CTSA-201ENST00000191018 FANCD2Q9BXW9 1451 aa29.84■■■□□ 2.37
CTSA-201ENST00000191018 NESP48681 1621 aa29.82■■■□□ 2.37
CTSA-201ENST00000191018 KIF21BO75037 1637 aa29.79■■■□□ 2.36
CTSA-201ENST00000191018 DNAJC5BQ9UF47 199 aa29.78■■■□□ 2.36
CTSA-201ENST00000191018 GOLGA3Q08378 1498 aa29.75■■■□□ 2.35
CTSA-201ENST00000191018 CEP164Q9UPV0 1460 aa29.73■■■□□ 2.35
CTSA-201ENST00000191018 TNIKQ9UKE5 1360 aa29.72■■■□□ 2.35
CTSA-201ENST00000191018 DNMBPQ6XZF7 1577 aa29.65■■■□□ 2.34
CTSA-201ENST00000191018 FGD5Q6ZNL6 1462 aa29.63■■■□□ 2.33
CTSA-201ENST00000191018 KIF27Q86VH2 1401 aa29.62■■■□□ 2.33
CTSA-201ENST00000191018 CEP162Q5TB80 1403 aa29.59■■■□□ 2.33
CTSA-201ENST00000191018 PDS5BQ9NTI5 1447 aa29.57■■■□□ 2.32
CTSA-201ENST00000191018 TOPBP1Q92547 1522 aa29.57■■■□□ 2.32
CTSA-201ENST00000191018 RAPGEF2Q9Y4G8 1499 aa29.55■■■□□ 2.32
CTSA-201ENST00000191018 UBTFP17480 764 aaKnown RBP29.55■■■□□ 2.32
CTSA-201ENST00000191018 PRXQ9BXM0 1461 aa29.54■■■□□ 2.32
CTSA-201ENST00000191018 ERICH3Q5RHP9 1530 aa29.53■■■□□ 2.32
CTSA-201ENST00000191018 KIF21AQ7Z4S6 1674 aa29.5■■■□□ 2.31
CTSA-201ENST00000191018 URB2Q14146 1524 aaKnown RBP29.47■■■□□ 2.31
CTSA-201ENST00000191018 CUX2O14529 1486 aa29.47■■■□□ 2.31
CTSA-201ENST00000191018 POLA1P09884 1462 aaPredicted RBP29.45■■■□□ 2.31
CTSA-201ENST00000191018 PCGF6Q9BYE7 350 aa29.41■■■□□ 2.3
CTSA-201ENST00000191018 ABCA10Q8WWZ4 1543 aa29.39■■■□□ 2.29
CTSA-201ENST00000191018 TRIM26Q12899 539 aaPredicted RBP29.35■■■□□ 2.29
CTSA-201ENST00000191018 RAD54L2Q9Y4B4 1467 aa29.35■■■□□ 2.29
CTSA-201ENST00000191018 IGF1RP08069 1367 aa29.34■■■□□ 2.29
CTSA-201ENST00000191018 WDR97A6NE52 1622 aa29.32■■■□□ 2.28
CTSA-201ENST00000191018 CLIP1P30622 1438 aa29.28■■■□□ 2.28
CTSA-201ENST00000191018 MRC2Q9UBG0 1479 aa29.2■■■□□ 2.26
CTSA-201ENST00000191018 CARMIL1Q5VZK9 1371 aa29.19■■■□□ 2.26
CTSA-201ENST00000191018 ABCA5Q8WWZ7 1642 aa29.15■■■□□ 2.26
CTSA-201ENST00000191018 TARBP1Q13395 1621 aaKnown RBP29.14■■■□□ 2.25
CTSA-201ENST00000191018 CUL7Q14999 1698 aa29.12■■■□□ 2.25
CTSA-201ENST00000191018 VPS8Q8N3P4 1428 aa29.09■■■□□ 2.25
CTSA-201ENST00000191018 WDR62O43379 1518 aa29.06■■■□□ 2.24
CTSA-201ENST00000191018 GAPVD1Q14C86 1478 aa29.02■■■□□ 2.24
CTSA-201ENST00000191018 PPARGC1BQ86YN6 1023 aaKnown RBP29.01■■■□□ 2.23
CTSA-201ENST00000191018 TDRD9Q8NDG6 1382 aaKnown RBP29.01■■■□□ 2.23
CTSA-201ENST00000191018 ARAP1Q96P48 1450 aa29■■■□□ 2.23
CTSA-201ENST00000191018 RANGAP1P46060 587 aaPredicted RBP28.95■■■□□ 2.23
CTSA-201ENST00000191018 ARHGAP35Q9NRY4 1499 aa28.93■■■□□ 2.22
CTSA-201ENST00000191018 THOC2Q8NI27 1593 aaKnown RBP28.93■■■□□ 2.22
CTSA-201ENST00000191018 ERCC6Q03468 1493 aa28.93■■■□□ 2.22
CTSA-201ENST00000191018 PBRM1Q86U86 1689 aa28.89■■■□□ 2.22
CTSA-201ENST00000191018 IFT140Q96RY7 1462 aa28.88■■■□□ 2.21
CTSA-201ENST00000191018 CTTNBP2Q8WZ74 1663 aa28.87■■■□□ 2.21
CTSA-201ENST00000191018 HRCP23327 699 aa28.85■■■□□ 2.21
CTSA-201ENST00000191018 AQRO60306 1485 aaKnown RBP eCLIP28.79■■■□□ 2.26e-8■■■■□ 26.2
CTSA-201ENST00000191018 GRIN2BQ13224 1484 aa28.74■■■□□ 2.19
CTSA-201ENST00000191018 ZNF608Q9ULD9 1512 aaPredicted RBP28.74■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms