RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 NISCHQ9Y2I1 1504 aa31.93■■■□□ 2.7
RTFDC1-201ENST00000023939 CCDC180Q9P1Z9 1646 aa27.73■■■□□ 2.03
RTFDC1-201ENST00000023939 ZCCHC6Q5VYS8 1495 aaKnown RBP26.89■■□□□ 1.89
RTFDC1-201ENST00000023939 DCAF1Q9Y4B6 1507 aa26.47■■□□□ 1.83
RTFDC1-201ENST00000023939 DCAF8L2P0C7V8 631 aa26.11■■□□□ 1.77
RTFDC1-201ENST00000023939 SHROOM4Q9ULL8 1493 aa26.09■■□□□ 1.77
RTFDC1-201ENST00000023939 MYO15BQ96JP2 1530 aa26.08■■□□□ 1.77
RTFDC1-201ENST00000023939 ABCC9O60706 1549 aa25.88■■□□□ 1.73
RTFDC1-201ENST00000023939 NACADO15069 1562 aa25.77■■□□□ 1.72
RTFDC1-201ENST00000023939 RB1CC1Q8TDY2 1594 aa25.45■■□□□ 1.67
RTFDC1-201ENST00000023939 SCRIBQ14160 1630 aa25.44■■□□□ 1.66
RTFDC1-201ENST00000023939 SUPT5HO00267 1087 aaKnown RBP25.25■■□□□ 1.63
RTFDC1-201ENST00000023939 UNC13AQ9UPW8 1703 aa24.9■■□□□ 1.58
RTFDC1-201ENST00000023939 RSF1Q96T23 1441 aaPredicted RBP24.87■■□□□ 1.57
RTFDC1-201ENST00000023939 CECR2Q9BXF3 1484 aa24.75■■□□□ 1.55
RTFDC1-201ENST00000023939 BICRAQ9NZM4 1560 aa24.69■■□□□ 1.54
RTFDC1-201ENST00000023939 MROH2BQ7Z745 1585 aa24.65■■□□□ 1.54
RTFDC1-201ENST00000023939 BAZ1AQ9NRL2 1556 aaPredicted RBP24.63■■□□□ 1.53
RTFDC1-201ENST00000023939 SMARCA4P51532 1647 aa24.46■■□□□ 1.51
RTFDC1-201ENST00000023939 PABPN1Q86U42 306 aaKnown RBP eCLIP24.44■■□□□ 1.53e-6■■■□□ 15.3
RTFDC1-201ENST00000023939 WIZO95785 1651 aa24.42■■□□□ 1.5
RTFDC1-201ENST00000023939 CHIC1Q5VXU3 224 aa24.4■■□□□ 1.5
RTFDC1-201ENST00000023939 TOP2AP11388 1531 aaKnown RBP24.24■■□□□ 1.47
RTFDC1-201ENST00000023939 PEG3Q9GZU2 1588 aa24.22■■□□□ 1.47
RTFDC1-201ENST00000023939 SMARCA2P51531 1590 aa24.02■■□□□ 1.44
RTFDC1-201ENST00000023939 ATAD2BQ9ULI0 1458 aa24.02■■□□□ 1.44
RTFDC1-201ENST00000023939 CCDC88BA6NC98 1476 aa23.98■■□□□ 1.43
RTFDC1-201ENST00000023939 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
RTFDC1-201ENST00000023939 BAZ1BQ9UIG0 1483 aaKnown RBP23.86■■□□□ 1.41
RTFDC1-201ENST00000023939 NCAPD3P42695 1498 aa23.8■■□□□ 1.4
RTFDC1-201ENST00000023939 HMGXB3Q12766 1538 aa23.77■■□□□ 1.4
RTFDC1-201ENST00000023939 TRIM41Q8WV44 630 aa23.77■■□□□ 1.4
RTFDC1-201ENST00000023939 ABCC8Q09428 1581 aa23.5■■□□□ 1.35
RTFDC1-201ENST00000023939 CC2D2AQ9P2K1 1620 aa23.46■■□□□ 1.35
RTFDC1-201ENST00000023939 LOC105371045A0A1W2PR82 267 aa23.4■■□□□ 1.34
RTFDC1-201ENST00000023939 WRNQ14191 1432 aaPredicted RBP eCLIP23.38■■□□□ 1.33
RTFDC1-201ENST00000023939 CFTRP13569 1480 aa23.33■■□□□ 1.32
RTFDC1-201ENST00000023939 FAM9AQ8IZU1 332 aaPredicted RBP23.26■■□□□ 1.31
RTFDC1-201ENST00000023939 SYNJ1O43426 1573 aa23.26■■□□□ 1.31
RTFDC1-201ENST00000023939 EEA1Q15075 1411 aa23.25■■□□□ 1.31
RTFDC1-201ENST00000023939 PRDM2Q13029 1718 aa23.17■■□□□ 1.3
RTFDC1-201ENST00000023939 TOP2BQ02880 1626 aa23.17■■□□□ 1.3
RTFDC1-201ENST00000023939 CADPSQ9ULU8 1353 aa23.17■■□□□ 1.3
RTFDC1-201ENST00000023939 DNAJC5BQ9UF47 199 aa23.16■■□□□ 1.3
RTFDC1-201ENST00000023939 SOGA1O94964 1423 aa23.15■■□□□ 1.3
RTFDC1-201ENST00000023939 BIVM-ERCC5R4GMW8 1640 aa23.15■■□□□ 1.3
RTFDC1-201ENST00000023939 CSRNP3Q8WYN3 585 aa23.04■■□□□ 1.28
RTFDC1-201ENST00000023939 CUX1P39880 1505 aa23.03■■□□□ 1.28
RTFDC1-201ENST00000023939 RUSC2Q8N2Y8 1516 aa23.03■■□□□ 1.28
RTFDC1-201ENST00000023939 LAMC3Q9Y6N6 1575 aa22.91■■□□□ 1.26
RTFDC1-201ENST00000023939 KIF21BO75037 1637 aa22.9■■□□□ 1.26
RTFDC1-201ENST00000023939 FANCD2Q9BXW9 1451 aa22.89■■□□□ 1.26
RTFDC1-201ENST00000023939 TNIKQ9UKE5 1360 aa22.89■■□□□ 1.26
RTFDC1-201ENST00000023939 GOLGA3Q08378 1498 aa22.89■■□□□ 1.25
RTFDC1-201ENST00000023939 CEP164Q9UPV0 1460 aa22.87■■□□□ 1.25
RTFDC1-201ENST00000023939 EHMT2Q96KQ7 1210 aa22.85■■□□□ 1.25
RTFDC1-201ENST00000023939 NESP48681 1621 aa22.81■■□□□ 1.24
RTFDC1-201ENST00000023939 KIF27Q86VH2 1401 aa22.78■■□□□ 1.24
RTFDC1-201ENST00000023939 DNMBPQ6XZF7 1577 aa22.76■■□□□ 1.23
RTFDC1-201ENST00000023939 CEP162Q5TB80 1403 aa22.74■■□□□ 1.23
RTFDC1-201ENST00000023939 FGD5Q6ZNL6 1462 aa22.73■■□□□ 1.23
RTFDC1-201ENST00000023939 PRXQ9BXM0 1461 aa22.72■■□□□ 1.23
RTFDC1-201ENST00000023939 PDS5BQ9NTI5 1447 aa22.72■■□□□ 1.23
RTFDC1-201ENST00000023939 ERICH3Q5RHP9 1530 aa22.71■■□□□ 1.23
RTFDC1-201ENST00000023939 UBTFP17480 764 aaKnown RBP22.7■■□□□ 1.22
RTFDC1-201ENST00000023939 TOPBP1Q92547 1522 aa22.69■■□□□ 1.22
RTFDC1-201ENST00000023939 RAPGEF2Q9Y4G8 1499 aa22.67■■□□□ 1.22
RTFDC1-201ENST00000023939 CUX2O14529 1486 aa22.62■■□□□ 1.21
RTFDC1-201ENST00000023939 TRIM26Q12899 539 aaPredicted RBP22.62■■□□□ 1.21
RTFDC1-201ENST00000023939 PCGF6Q9BYE7 350 aa22.6■■□□□ 1.21
RTFDC1-201ENST00000023939 URB2Q14146 1524 aaKnown RBP22.6■■□□□ 1.21
RTFDC1-201ENST00000023939 POLA1P09884 1462 aaPredicted RBP22.59■■□□□ 1.21
RTFDC1-201ENST00000023939 ABCA10Q8WWZ4 1543 aa22.58■■□□□ 1.21
RTFDC1-201ENST00000023939 AEBP2Q6ZN18 517 aaPredicted RBP22.57■■□□□ 1.2
RTFDC1-201ENST00000023939 IGF1RP08069 1367 aa22.56■■□□□ 1.2
RTFDC1-201ENST00000023939 KIF21AQ7Z4S6 1674 aa22.53■■□□□ 1.2
RTFDC1-201ENST00000023939 CLIP1P30622 1438 aa22.51■■□□□ 1.19
RTFDC1-201ENST00000023939 RAD54L2Q9Y4B4 1467 aa22.49■■□□□ 1.19
RTFDC1-201ENST00000023939 WDR97A6NE52 1622 aa22.45■■□□□ 1.18
RTFDC1-201ENST00000023939 CARMIL1Q5VZK9 1371 aa22.43■■□□□ 1.18
RTFDC1-201ENST00000023939 MRC2Q9UBG0 1479 aa22.41■■□□□ 1.18
RTFDC1-201ENST00000023939 VPS8Q8N3P4 1428 aa22.38■■□□□ 1.17
RTFDC1-201ENST00000023939 ABCA5Q8WWZ7 1642 aa22.36■■□□□ 1.17
RTFDC1-201ENST00000023939 CUL7Q14999 1698 aa22.35■■□□□ 1.17
RTFDC1-201ENST00000023939 TARBP1Q13395 1621 aaKnown RBP22.33■■□□□ 1.17
RTFDC1-201ENST00000023939 WDR62O43379 1518 aa22.3■■□□□ 1.16
RTFDC1-201ENST00000023939 GAPVD1Q14C86 1478 aa22.28■■□□□ 1.16
RTFDC1-201ENST00000023939 ARAP1Q96P48 1450 aa22.27■■□□□ 1.15
RTFDC1-201ENST00000023939 HRCP23327 699 aa22.25■■□□□ 1.15
RTFDC1-201ENST00000023939 TDRD9Q8NDG6 1382 aaKnown RBP22.24■■□□□ 1.15
RTFDC1-201ENST00000023939 ARHGAP35Q9NRY4 1499 aa22.21■■□□□ 1.15
RTFDC1-201ENST00000023939 PPARGC1BQ86YN6 1023 aaKnown RBP22.21■■□□□ 1.15
RTFDC1-201ENST00000023939 IFT140Q96RY7 1462 aa22.2■■□□□ 1.14
RTFDC1-201ENST00000023939 ERCC6Q03468 1493 aa22.16■■□□□ 1.14
RTFDC1-201ENST00000023939 RANGAP1P46060 587 aaPredicted RBP22.15■■□□□ 1.14
RTFDC1-201ENST00000023939 THOC2Q8NI27 1593 aaKnown RBP22.14■■□□□ 1.13
RTFDC1-201ENST00000023939 PBRM1Q86U86 1689 aa22.1■■□□□ 1.13
RTFDC1-201ENST00000023939 CTTNBP2Q8WZ74 1663 aa22.1■■□□□ 1.13
RTFDC1-201ENST00000023939 APLP2Q06481 763 aa22.09■■□□□ 1.13
RTFDC1-201ENST00000023939 GRIN2BQ13224 1484 aa22.08■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms