RNA–Protein interactions for RNA: ENST00000013034.3

NME1-201, Transcript of NME/NM23 nucleoside diphosphate kinase 1, humanhuman

TSL 3 BASIC

Gene NME1, Length 796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME1-201ENST00000013034 NISCHQ9Y2I1 1504 aa28.43■■■□□ 2.14
NME1-201ENST00000013034 ABCC9O60706 1549 aa25.8■■□□□ 1.72
NME1-201ENST00000013034 CCDC180Q9P1Z9 1646 aa25.66■■□□□ 1.7
NME1-201ENST00000013034 RB1CC1Q8TDY2 1594 aa24.53■■□□□ 1.52
NME1-201ENST00000013034 DNAJC5BQ9UF47 199 aa24.32■■□□□ 1.48
NME1-201ENST00000013034 NACADO15069 1562 aa24.3■■□□□ 1.48
NME1-201ENST00000013034 MYO15BQ96JP2 1530 aa23.94■■□□□ 1.42
NME1-201ENST00000013034 DCAF8L2P0C7V8 631 aa23.92■■□□□ 1.42
NME1-201ENST00000013034 PABPN1Q86U42 306 aaKnown RBP eCLIP23.91■■□□□ 1.42
NME1-201ENST00000013034 UNC13AQ9UPW8 1703 aa23.88■■□□□ 1.41
NME1-201ENST00000013034 BICRAQ9NZM4 1560 aa23.78■■□□□ 1.4
NME1-201ENST00000013034 SHROOM4Q9ULL8 1493 aa23.58■■□□□ 1.37
NME1-201ENST00000013034 ZCCHC6Q5VYS8 1495 aaKnown RBP23.56■■□□□ 1.36
NME1-201ENST00000013034 DCAF1Q9Y4B6 1507 aa23.54■■□□□ 1.36
NME1-201ENST00000013034 CC2D2AQ9P2K1 1620 aa23.31■■□□□ 1.32
NME1-201ENST00000013034 SCRIBQ14160 1630 aa23.3■■□□□ 1.32
NME1-201ENST00000013034 CECR2Q9BXF3 1484 aa23.3■■□□□ 1.32
NME1-201ENST00000013034 EIF4G1Q04637 1599 aaKnown RBP23.24■■□□□ 1.31
NME1-201ENST00000013034 DNAJC5Q9H3Z4 198 aa22.56■■□□□ 1.2
NME1-201ENST00000013034 CUX2O14529 1486 aa22.42■■□□□ 1.18
NME1-201ENST00000013034 NCAPD3P42695 1498 aa22.41■■□□□ 1.18
NME1-201ENST00000013034 ERCC6Q03468 1493 aa22.34■■□□□ 1.17
NME1-201ENST00000013034 ATAD2BQ9ULI0 1458 aa22.3■■□□□ 1.16
NME1-201ENST00000013034 HMGXB3Q12766 1538 aa22.28■■□□□ 1.16
NME1-201ENST00000013034 SMARCA2P51531 1590 aa22.27■■□□□ 1.16
NME1-201ENST00000013034 SMARCA4P51532 1647 aa22.24■■□□□ 1.15
NME1-201ENST00000013034 BAZ1AQ9NRL2 1556 aaPredicted RBP22.12■■□□□ 1.13
NME1-201ENST00000013034 BAZ1BQ9UIG0 1483 aaKnown RBP22.09■■□□□ 1.13
NME1-201ENST00000013034 NESP48681 1621 aa22.09■■□□□ 1.13
NME1-201ENST00000013034 PEG3Q9GZU2 1588 aa22.06■■□□□ 1.12
NME1-201ENST00000013034 THOC2Q8NI27 1593 aaKnown RBP21.99■■□□□ 1.11
NME1-201ENST00000013034 LAMC3Q9Y6N6 1575 aa21.98■■□□□ 1.11
NME1-201ENST00000013034 MROH2BQ7Z745 1585 aa21.87■■□□□ 1.09
NME1-201ENST00000013034 PDS5BQ9NTI5 1447 aa21.83■■□□□ 1.09
NME1-201ENST00000013034 KIF21AQ7Z4S6 1674 aa21.82■■□□□ 1.08
NME1-201ENST00000013034 CADPSQ9ULU8 1353 aa21.7■■□□□ 1.06
NME1-201ENST00000013034 MRC2Q9UBG0 1479 aa21.68■■□□□ 1.06
NME1-201ENST00000013034 WDR62O43379 1518 aa21.65■■□□□ 1.06
NME1-201ENST00000013034 WIZO95785 1651 aa21.57■■□□□ 1.04
NME1-201ENST00000013034 CEP164Q9UPV0 1460 aa21.54■■□□□ 1.04
NME1-201ENST00000013034 FANCD2Q9BXW9 1451 aa21.47■■□□□ 1.03
NME1-201ENST00000013034 TRIM41Q8WV44 630 aa21.44■■□□□ 1.02
NME1-201ENST00000013034 CFTRP13569 1480 aa21.44■■□□□ 1.02
NME1-201ENST00000013034 TOP2AP11388 1531 aaKnown RBP21.37■■□□□ 1.01
NME1-201ENST00000013034 RSF1Q96T23 1441 aaPredicted RBP21.33■■□□□ 1.01
NME1-201ENST00000013034 URB2Q14146 1524 aaKnown RBP21.3■■□□□ 1
NME1-201ENST00000013034 OSCARQ8IYS5 282 aa21.24■□□□□ 0.99
NME1-201ENST00000013034 PRDM2Q13029 1718 aa21.19■□□□□ 0.98
NME1-201ENST00000013034 IFT140Q96RY7 1462 aa21.13■□□□□ 0.97
NME1-201ENST00000013034 CCDC88BA6NC98 1476 aa21.06■□□□□ 0.96
NME1-201ENST00000013034 ZNF608Q9ULD9 1512 aaPredicted RBP21.05■□□□□ 0.96
NME1-201ENST00000013034 RIMBP3CA6NJZ7 1639 aa21.05■□□□□ 0.96
NME1-201ENST00000013034 RIMBP3BA6NNM3 1639 aa21.05■□□□□ 0.96
NME1-201ENST00000013034 RIMBP3Q9UFD9 1639 aa21.05■□□□□ 0.96
NME1-201ENST00000013034 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
NME1-201ENST00000013034 ABCC8Q09428 1581 aa21.01■□□□□ 0.95
NME1-201ENST00000013034 ARHGEF11O15085 1522 aa20.99■□□□□ 0.95
NME1-201ENST00000013034 EIF4G3O43432 1585 aaKnown RBP20.98■□□□□ 0.95
NME1-201ENST00000013034 DNMBPQ6XZF7 1577 aa20.97■□□□□ 0.95
NME1-201ENST00000013034 TARBP1Q13395 1621 aaKnown RBP20.87■□□□□ 0.93
NME1-201ENST00000013034 CHD1O14646 1710 aa20.82■□□□□ 0.92
NME1-201ENST00000013034 POLA1P09884 1462 aaPredicted RBP20.81■□□□□ 0.92
NME1-201ENST00000013034 AQRO60306 1485 aaKnown RBP eCLIP20.81■□□□□ 0.928e-7■■■□□ 16.8
NME1-201ENST00000013034 ARAP1Q96P48 1450 aa20.76■□□□□ 0.91
NME1-201ENST00000013034 CYB5RLQ6IPT4 315 aa20.73■□□□□ 0.91
NME1-201ENST00000013034 WDR97A6NE52 1622 aa20.73■□□□□ 0.91
NME1-201ENST00000013034 RAD54L2Q9Y4B4 1467 aa20.69■□□□□ 0.9
NME1-201ENST00000013034 FBLN2P98095 1184 aa20.68■□□□□ 0.9
NME1-201ENST00000013034 SOGA1O94964 1423 aa20.67■□□□□ 0.9
NME1-201ENST00000013034 SNAPC4Q5SXM2 1469 aa20.65■□□□□ 0.9
NME1-201ENST00000013034 FGD5Q6ZNL6 1462 aa20.64■□□□□ 0.89
NME1-201ENST00000013034 TDRD9Q8NDG6 1382 aaKnown RBP20.64■□□□□ 0.89
NME1-201ENST00000013034 CLASP1Q7Z460 1538 aa20.63■□□□□ 0.89
NME1-201ENST00000013034 MAGI1Q96QZ7 1491 aaPredicted RBP20.62■□□□□ 0.89
NME1-201ENST00000013034 SYNJ1O43426 1573 aa20.6■□□□□ 0.89
NME1-201ENST00000013034 TRHP20396 242 aaPredicted RBP20.59■□□□□ 0.89
NME1-201ENST00000013034 CUX1P39880 1505 aa20.58■□□□□ 0.88
NME1-201ENST00000013034 GRIN2BQ13224 1484 aa20.57■□□□□ 0.88
NME1-201ENST00000013034 SYNJ2O15056 1496 aa20.54■□□□□ 0.88
NME1-201ENST00000013034 CHMP7Q8WUX9 453 aaPredicted RBP20.52■□□□□ 0.88
NME1-201ENST00000013034 PBRM1Q86U86 1689 aa20.45■□□□□ 0.86
NME1-201ENST00000013034 GAPVD1Q14C86 1478 aa20.44■□□□□ 0.86
NME1-201ENST00000013034 ABCA10Q8WWZ4 1543 aa20.42■□□□□ 0.86
NME1-201ENST00000013034 ABCA5Q8WWZ7 1642 aa20.42■□□□□ 0.86
NME1-201ENST00000013034 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
NME1-201ENST00000013034 ADAMTS12P58397 1594 aa20.29■□□□□ 0.84
NME1-201ENST00000013034 WRNQ14191 1432 aaPredicted RBP eCLIP20.27■□□□□ 0.84
NME1-201ENST00000013034 NUP160Q12769 1436 aa20.26■□□□□ 0.83
NME1-201ENST00000013034 CEP170Q5SW79 1584 aa20.24■□□□□ 0.83
NME1-201ENST00000013034 ERCC6L2Q5T890 1561 aa20.22■□□□□ 0.83
NME1-201ENST00000013034 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
NME1-201ENST00000013034 BIVM-ERCC5R4GMW8 1640 aa20.21■□□□□ 0.83
NME1-201ENST00000013034 SHROOM2Q13796 1616 aa20.2■□□□□ 0.82
NME1-201ENST00000013034 FHAD1B1AJZ9 1412 aa20.19■□□□□ 0.82
NME1-201ENST00000013034 AEBP2Q6ZN18 517 aaPredicted RBP20.18■□□□□ 0.82
NME1-201ENST00000013034 ERICH3Q5RHP9 1530 aa20.17■□□□□ 0.82
NME1-201ENST00000013034 SUPT5HO00267 1087 aaKnown RBP20.1■□□□□ 0.81
NME1-201ENST00000013034 PRG4Q92954 1404 aaPredicted RBP20.03■□□□□ 0.8
NME1-201ENST00000013034 RUSC2Q8N2Y8 1516 aa20.02■□□□□ 0.79
NME1-201ENST00000013034 KIF13AQ9H1H9 1805 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms