RNA–Protein interactions for RNA: ENSMUST00000112298.9

Ssh1-202, Transcript of Protein phosphatase Slingshot homolog 1, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ssh1, Length 5,584 nt, Biotype protein coding, Subcellular localisation Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ssh1-202ENSMUST00000112298 Rhox8Q6VSS7 320 aa21.72■■□□□ 1.07
Ssh1-202ENSMUST00000112298 Rpgrip1Q9EPQ2 1331 aa20.38■□□□□ 0.85
Ssh1-202ENSMUST00000112298 Cngb1E1AZ71 1325 aa19.76■□□□□ 0.75
Ssh1-202ENSMUST00000112298 Las1lA2BE28 776 aaKnown RBP19.66■□□□□ 0.74
Ssh1-202ENSMUST00000112298 Ehmt2Q9Z148 1263 aaKnown RBP19.42■□□□□ 0.7
Ssh1-202ENSMUST00000112298 Pelp1Q9DBD5 1123 aaKnown RBP19.39■□□□□ 0.69
Ssh1-202ENSMUST00000112298 Wdr66E9Q743 1299 aa19.25■□□□□ 0.67
Ssh1-202ENSMUST00000112298 Esf1Q3V1V3 845 aaKnown RBP19.14■□□□□ 0.65
Ssh1-202ENSMUST00000112298 Ccdc136Q3TVA9 1136 aa19.09■□□□□ 0.65
Ssh1-202ENSMUST00000112298 Ube2uB1AUC4 352 aa19.03■□□□□ 0.64
Ssh1-202ENSMUST00000112298 Trim41Q5NCC3 630 aa18.94■□□□□ 0.62
Ssh1-202ENSMUST00000112298 Zeb1Q64318 1117 aa18.93■□□□□ 0.62
Ssh1-202ENSMUST00000112298 Gab3Q8BSM5 595 aa18.82■□□□□ 0.6
Ssh1-202ENSMUST00000112298 Npm2Q80W85 207 aa18.82■□□□□ 0.6
Ssh1-202ENSMUST00000112298 CenpbP27790 599 aa18.65■□□□□ 0.58
Ssh1-202ENSMUST00000112298 Myt1lP97500 1187 aa18.58■□□□□ 0.56
Ssh1-202ENSMUST00000112298 NefmP08553 848 aa18.57■□□□□ 0.56
Ssh1-202ENSMUST00000112298 Stra8P70278 393 aa18.56■□□□□ 0.56
Ssh1-202ENSMUST00000112298 Acin1Q9JIX8 1338 aaKnown RBP18.55■□□□□ 0.56
Ssh1-202ENSMUST00000112298 NischQ80TM9 1593 aa18.51■□□□□ 0.55
Ssh1-202ENSMUST00000112298 Amer1Q7TS75 1132 aa18.42■□□□□ 0.54
Ssh1-202ENSMUST00000112298 UbtfP25976 765 aaKnown RBP18.25■□□□□ 0.51
Ssh1-202ENSMUST00000112298 Ccdc180J3QNE4 1664 aa18.18■□□□□ 0.5
Ssh1-202ENSMUST00000112298 HrcG5E8J6 738 aa18.1■□□□□ 0.49
Ssh1-202ENSMUST00000112298 Slc24a1Q91WD8 1130 aa18.09■□□□□ 0.49
Ssh1-202ENSMUST00000112298 Myt1Q8CFC2 1127 aa18.07■□□□□ 0.48
Ssh1-202ENSMUST00000112298 Cdk11bP24788 784 aaKnown RBP18.06■□□□□ 0.48
Ssh1-202ENSMUST00000112298 Tnnt3Q9QZ47 272 aa18■□□□□ 0.47
Ssh1-202ENSMUST00000112298 4930567H17RikQ3V0K5 233 aa17.98■□□□□ 0.47
Ssh1-202ENSMUST00000112298 Rtl1Q7M732 1744 aa17.97■□□□□ 0.47
Ssh1-202ENSMUST00000112298 Anp32bQ9EST5 272 aaKnown RBP17.97■□□□□ 0.47
Ssh1-202ENSMUST00000112298 NrdcQ8BHG1 1161 aa17.91■□□□□ 0.46
Ssh1-202ENSMUST00000112298 NeflP08551 543 aa17.83■□□□□ 0.45
Ssh1-202ENSMUST00000112298 4933416C03RikQ3V063 378 aa17.8■□□□□ 0.44
Ssh1-202ENSMUST00000112298 Pcgf6Q99NA9 353 aa17.8■□□□□ 0.44
Ssh1-202ENSMUST00000112298 Nop58Q6DFW4 536 aaKnown RBP17.79■□□□□ 0.44
Ssh1-202ENSMUST00000112298 Il27Q8K3I6 234 aa17.77■□□□□ 0.44
Ssh1-202ENSMUST00000112298 NclP09405 707 aaKnown RBP17.74■□□□□ 0.43
Ssh1-202ENSMUST00000112298 Fam50aQ9WV03 339 aaKnown RBP17.71■□□□□ 0.43
Ssh1-202ENSMUST00000112298 Ttbk1Q6PCN3 1308 aa17.7■□□□□ 0.42
Ssh1-202ENSMUST00000112298 Rtl5Q5DTT4 599 aa17.66■□□□□ 0.42
Ssh1-202ENSMUST00000112298 Neurod1Q60867 357 aa17.61■□□□□ 0.41
Ssh1-202ENSMUST00000112298 TonslQ6NZL6 1363 aa17.59■□□□□ 0.41
Ssh1-202ENSMUST00000112298 Os9Q8K2C7 672 aa17.59■□□□□ 0.41
Ssh1-202ENSMUST00000112298 Eif5bQ05D44 1216 aaKnown RBP17.58■□□□□ 0.4
Ssh1-202ENSMUST00000112298 Ap3b1Q9Z1T1 1105 aa17.57■□□□□ 0.4
Ssh1-202ENSMUST00000112298 Zcchc6Q5BLK4 1491 aaKnown RBP17.54■□□□□ 0.4
Ssh1-202ENSMUST00000112298 Supt5hO55201 1082 aaKnown RBP17.42■□□□□ 0.38
Ssh1-202ENSMUST00000112298 Mier1Q5UAK0 511 aa17.32■□□□□ 0.36
Ssh1-202ENSMUST00000112298 Ppargc1bQ8VHJ7 1014 aa17.31■□□□□ 0.36
Ssh1-202ENSMUST00000112298 ClspnQ80YR7 1315 aa17.26■□□□□ 0.35
Ssh1-202ENSMUST00000112298 Anp32aO35381 247 aa17.25■□□□□ 0.35
Ssh1-202ENSMUST00000112298 Abcc9P70170 1546 aa17.16■□□□□ 0.34
Ssh1-202ENSMUST00000112298 Npm1Q61937 292 aaKnown RBP17.11■□□□□ 0.33
Ssh1-202ENSMUST00000112298 Hdac5Q9Z2V6 1113 aa17.1■□□□□ 0.33
Ssh1-202ENSMUST00000112298 DaxxO35613 739 aa17.07■□□□□ 0.32
Ssh1-202ENSMUST00000112298 Lmod2Q3UHZ5 550 aa17.06■□□□□ 0.32
Ssh1-202ENSMUST00000112298 Nlrp6Q91WS2 869 aa17.03■□□□□ 0.32
Ssh1-202ENSMUST00000112298 Hnrnpul2Q00PI9 745 aaKnown RBP17.03■□□□□ 0.32
Ssh1-202ENSMUST00000112298 Plekhg3Q4VAC9 1341 aa17.02■□□□□ 0.32
Ssh1-202ENSMUST00000112298 Gm35339A0A140LHH9 1649 aa17■□□□□ 0.31
Ssh1-202ENSMUST00000112298 Zbtb7cQ8VCZ7 619 aa16.99■□□□□ 0.31
Ssh1-202ENSMUST00000112298 Gm13697A2AK42 830 aa16.99■□□□□ 0.31
Ssh1-202ENSMUST00000112298 DiexfQ8BTT6 772 aaKnown RBP16.97■□□□□ 0.31
Ssh1-202ENSMUST00000112298 Ccer2J3QPU5 274 aa16.93■□□□□ 0.3
Ssh1-202ENSMUST00000112298 Erich6D3Z6S9 713 aa16.86■□□□□ 0.29
Ssh1-202ENSMUST00000112298 Anks4bQ8K3X6 423 aa16.86■□□□□ 0.29
Ssh1-202ENSMUST00000112298 Upf2A2AT37 1269 aaKnown RBP16.84■□□□□ 0.29
Ssh1-202ENSMUST00000112298 Atp1b4Q99ME6 356 aa16.83■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Polr3glQ8R0C0 218 aa16.83■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Clip1Q922J3 1391 aa16.82■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Brd4Q9ESU6 1400 aaKnown RBP16.81■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Dcaf1Q80TR8 1506 aa16.81■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Chic1Q8CBW7 227 aa16.8■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Zbtb4Q5F293 982 aa16.79■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Aplp2Q06335 707 aa16.78■□□□□ 0.28
Ssh1-202ENSMUST00000112298 Cep164Q5DU05 1446 aa16.77■□□□□ 0.27
Ssh1-202ENSMUST00000112298 Eid3Q3V124 375 aa16.72■□□□□ 0.27
Ssh1-202ENSMUST00000112298 Sall2Q9QX96 1004 aa16.72■□□□□ 0.27
Ssh1-202ENSMUST00000112298 Gm13695A2AK44 830 aa16.71■□□□□ 0.27
Ssh1-202ENSMUST00000112298 Calr4Q3TQS0 420 aa16.71■□□□□ 0.27
Ssh1-202ENSMUST00000112298 Mapk8ip2Q9ERE9 830 aa16.71■□□□□ 0.26
Ssh1-202ENSMUST00000112298 Ifnlr1Q8CGK5 535 aa16.69■□□□□ 0.26
Ssh1-202ENSMUST00000112298 Prdm10Q3UTQ7 1184 aa16.67■□□□□ 0.26
Ssh1-202ENSMUST00000112298 ArxO35085 564 aa16.65■□□□□ 0.26
Ssh1-202ENSMUST00000112298 Abcc8B2RUS7 1588 aa16.65■□□□□ 0.26
Ssh1-202ENSMUST00000112298 Ccdc9Q8VC31 543 aaKnown RBP16.64■□□□□ 0.25
Ssh1-202ENSMUST00000112298 Csrnp3P59055 597 aa16.63■□□□□ 0.25
Ssh1-202ENSMUST00000112298 Ppp4r2Q0VGB7 417 aa16.63■□□□□ 0.25
Ssh1-202ENSMUST00000112298 Clstn2Q9ER65 966 aa16.59■□□□□ 0.25
Ssh1-202ENSMUST00000112298 Wdr43Q6ZQL4 677 aaKnown RBP16.58■□□□□ 0.24
Ssh1-202ENSMUST00000112298 Gm38655A0A286YDK6 273 aa16.57■□□□□ 0.24
Ssh1-202ENSMUST00000112298 CatipB9EKE5 520 aa16.55■□□□□ 0.24
Ssh1-202ENSMUST00000112298 Hsp90aa1P07901 733 aaKnown RBP16.54■□□□□ 0.24
Ssh1-202ENSMUST00000112298 Fkbp15Q6P9Q6 1216 aaKnown RBP16.54■□□□□ 0.24
Ssh1-202ENSMUST00000112298 Mrs2Q5NCE8 434 aa16.51■□□□□ 0.23
Ssh1-202ENSMUST00000112298 Rad21Q61550 635 aaKnown RBP16.48■□□□□ 0.23
Ssh1-202ENSMUST00000112298 BlmO88700 1416 aa16.43■□□□□ 0.22
Ssh1-202ENSMUST00000112298 Chic2Q9D9G3 165 aa16.42■□□□□ 0.22
Ssh1-202ENSMUST00000112298 Fgd1P52734 960 aa16.41■□□□□ 0.22
Retrieved 100 of 22,080 RNA–protein pairs in 416 ms