RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	ENO1	P00924	437 aa	Known RBP	3.85	□□□□□ -1.79
PEX1	YKL197C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	3.85	□□□□□ -1.79	not detected
PEX1	YKL197C	SWI3	P32591	825 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	ANP1	P32629	500 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	MEF2	P39677	819 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	YPP1	P46951	817 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	ARR2	Q06597	130 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	PDR5	P33302	1511 aa	Known RBP	3.85	□□□□□ -1.79
PEX1	YKL197C	MRPL25	P23369	157 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	ZUO1	P32527	433 aa	Known RBP	3.85	□□□□□ -1.79
PEX1	YKL197C	DLD1	P32891	587 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	BUD2	P33314	1104 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	MET1	P36150	593 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	RNH70	P53331	553 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	CSR1	Q06705	408 aa	Known RBP	3.85	□□□□□ -1.79
PEX1	YKL197C	YIL002W-A	Q3E7Z5	69 aa		3.85	□□□□□ -1.79
PEX1	YKL197C	NUP157	P40064	1391 aa	Known RBP	3.84	□□□□□ -1.79
PEX1	YKL197C	FAR1	P21268	830 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	YGL081W	P53156	320 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	DPH6	Q12429	685 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	NUP188	P52593	1655 aa	Known RBP	3.84	□□□□□ -1.79
PEX1	YKL197C	CFT1	Q06632	1357 aa	Known RBP	3.84	□□□□□ -1.79
PEX1	YKL197C	APN1	P22936	367 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	KIP2	P28743	706 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	GRX4	P32642	244 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	MRE11	P32829	692 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	STN1	P38960	494 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	UBP12	P39538	1254 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	SWD1	P39706	426 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	RNH1	Q04740	348 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	MDM38	Q08179	573 aa		3.84	□□□□□ -1.79
PEX1	YKL197C	STE6	P12866	1290 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	STE11	P23561	717 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	RME1	P32338	300 aa	Known RBP	3.84	□□□□□ -1.8
PEX1	YKL197C	RPC37	P36121	282 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	YER034W	P40022	185 aa	Known RBP	3.84	□□□□□ -1.8
PEX1	YKL197C	YJR115W	P47152	169 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	KEL2	P50090	882 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	YNL050C	P53952	270 aa		3.84	□□□□□ -1.8
PEX1	YKL197C	YSP2	Q06681	1438 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	SSB1	P11484	613 aa	Known RBP	3.83	□□□□□ -1.8
PEX1	YKL197C	KAR3	P17119	729 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	SSB2	P40150	613 aa	Known RBP	3.83	□□□□□ -1.8
PEX1	YKL197C	RPN4	Q03465	531 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	RRP36	Q12481	300 aa	Predicted RBP	3.83	□□□□□ -1.8
PEX1	YKL197C	SWI6	P09959	803 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	GUT2	P32191	649 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	FBP26	P32604	452 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.83	□□□□□ -1.8	not detected
PEX1	YKL197C	STE20	Q03497	939 aa	Known RBP	3.83	□□□□□ -1.8
PEX1	YKL197C	GCN2	P15442	1659 aa		3.83	□□□□□ -1.8
PEX1	YKL197C	KAR1	P11927	433 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	KRR1	P25586	316 aa	Predicted RBP	3.82	□□□□□ -1.8
PEX1	YKL197C	YEL1	P34225	687 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	SNF7	P39929	240 aa	Known RBP	3.82	□□□□□ -1.8
PEX1	YKL197C	IRR1	P40541	1150 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	RTC4	P53850	401 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	SPO19	Q03029	223 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	YBL111C	Q3E7Y5	667 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	HMG1	P12683	1054 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	RXT2	P38255	430 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	GGA2	P38817	585 aa	Known RBP	3.82	□□□□□ -1.8
PEX1	YKL197C	STM1	P39015	273 aa	Known RBP	3.82	□□□□□ -1.8
PEX1	YKL197C	SET2	P46995	733 aa	Known RBP	3.82	□□□□□ -1.8
PEX1	YKL197C	HOP2	P53187	214 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	ISU1	Q03020	165 aa		3.82	□□□□□ -1.8
PEX1	YKL197C	TUF1	P02992	437 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	RPN12	P32496	274 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	ECM32	P32644	1121 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	COY1	P34237	679 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	ABZ1	P37254	787 aa	Predicted RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	ETP1	P38748	585 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	UTP18	P40362	594 aa	Predicted RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	DAS1	P47005	663 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	VTC4	P47075	721 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	SRB7	P47822	140 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	MTC5	Q03897	1148 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	PEX19	Q07418	342 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	THS1	P04801	734 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	VPS24	P36095	224 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	TBS1	P38114	1094 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	RTT106	P40161	455 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	SDS3	P40505	327 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	BRE2	P43132	505 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	SSQ1	Q05931	657 aa	Predicted RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	YPL191C	Q08930	360 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	BUD14	P27637	709 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	SMY2	P32909	740 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	STO1	P34160	861 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	HOL1	P53389	586 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	PNG1	Q02890	363 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	VPS30	Q02948	557 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	SNZ1	Q03148	297 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	RSM28	Q03430	361 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	DBP9	Q06218	594 aa	Known RBP	3.81	□□□□□ -1.8
PEX1	YKL197C	ATG20	Q07528	640 aa		3.81	□□□□□ -1.8
PEX1	YKL197C	NAT1	P12945	854 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	HNM1	P19807	563 aa		3.8	□□□□□ -1.8
PEX1	YKL197C	TRX2	P22803	104 aa	Known RBP	3.8	□□□□□ -1.8
PEX1	YKL197C	CLB1	P24868	471 aa		3.8	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 13.2 ms