RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBA4	YHR111W	VPS13	Q07878	3144 aa		11.72	□□□□□ -0.53
UBA4	YHR111W	ECM29	P38737	1868 aa		11.71	□□□□□ -0.53
UBA4	YHR111W	TRL1	P09880	827 aa	Known RBP	11.71	□□□□□ -0.53
UBA4	YHR111W	RPL8A	P17076	256 aa	Known RBP	11.71	□□□□□ -0.53
UBA4	YHR111W	BCS1	P32839	456 aa		11.71	□□□□□ -0.53
UBA4	YHR111W	AFG3	P39925	761 aa		11.71	□□□□□ -0.53
UBA4	YHR111W	LIF1	P53150	421 aa		11.71	□□□□□ -0.53
UBA4	YHR111W	MDM20	Q12387	796 aa	Known RBP	11.71	□□□□□ -0.53
UBA4	YHR111W	TKL1	P23254	680 aa	Known RBP	11.7	□□□□□ -0.54
UBA4	YHR111W	YUR1	P26725	428 aa		11.7	□□□□□ -0.54
UBA4	YHR111W	FBP26	P32604	452 aa		11.7	□□□□□ -0.54
UBA4	YHR111W	UIP5	P36137	443 aa		11.7	□□□□□ -0.54
UBA4	YHR111W	YGL039W	P53183	348 aa	Known RBP	11.7	□□□□□ -0.54
UBA4	YHR111W	YDR341C	Q05506	607 aa	Known RBP	11.7	□□□□□ -0.54
UBA4	YHR111W	MAM3	Q12296	706 aa		11.7	□□□□□ -0.54
UBA4	YHR111W	MYO1	P08964	1928 aa		11.7	□□□□□ -0.54
UBA4	YHR111W	CIT1	P00890	479 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	DBP1	P24784	617 aa	Known RBP	11.69	□□□□□ -0.54
UBA4	YHR111W	PWP2	P25635	923 aa	Known RBP	11.69	□□□□□ -0.54
UBA4	YHR111W	MCM4	P30665	933 aa	Known RBP	11.69	□□□□□ -0.54
UBA4	YHR111W	REG2	P38232	338 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	KSP1	P38691	1029 aa	Known RBP	11.69	□□□□□ -0.54
UBA4	YHR111W	VPS53	P47061	822 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	ASE1	P50275	885 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	ISA1	Q07821	250 aa	Predicted RBP	11.69	□□□□□ -0.54
UBA4	YHR111W	YDR461C-A	Q2V2P7	80 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	TAO3	P40468	2376 aa		11.69	□□□□□ -0.54
UBA4	YHR111W	UGA4	P32837	571 aa		11.68	□□□□□ -0.54
UBA4	YHR111W	SEC8	P32855	1065 aa		11.68	□□□□□ -0.54
UBA4	YHR111W	TFC4	P33339	1025 aa		11.68	□□□□□ -0.54
UBA4	YHR111W	DBP7	P36120	742 aa	Known RBP	11.68	□□□□□ -0.54
UBA4	YHR111W	ARP5	P53946	755 aa		11.68	□□□□□ -0.54
UBA4	YHR111W	ECM30	Q06673	1274 aa		11.68	□□□□□ -0.54
UBA4	YHR111W	TY1B-A	O13527	1196 aa	Known RBP	11.67	□□□□□ -0.54
UBA4	YHR111W	MET6	P05694	767 aa	Known RBP	11.67	□□□□□ -0.54
UBA4	YHR111W	EPL1	P43572	832 aa		11.67	□□□□□ -0.54
UBA4	YHR111W	SCS3	P53012	380 aa		11.67	□□□□□ -0.54
UBA4	YHR111W	YMR321C	Q04898	105 aa		11.67	□□□□□ -0.54
UBA4	YHR111W	YLR326W	Q06170	240 aa	Known RBP	11.67	□□□□□ -0.54
UBA4	YHR111W	PDC1	P06169	563 aa	Known RBP	11.66	□□□□□ -0.54
UBA4	YHR111W	MATALPHA2	P0CY08	210 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	HMLALPHA2	P0CY09	210 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	STI1	P15705	589 aa	Known RBP RIP-Chip data	11.66	□□□□□ -0.54	not detected
UBA4	YHR111W	RPC31	P17890	251 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	PAN5	P38787	379 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	CTR1	P49573	406 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	YKE2	P52553	114 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	PTA1	Q01329	785 aa	Predicted RBP	11.66	□□□□□ -0.54
UBA4	YHR111W	TRM11	Q12463	433 aa		11.66	□□□□□ -0.54
UBA4	YHR111W	POX1	P13711	748 aa		11.65	□□□□□ -0.54
UBA4	YHR111W	BMH2	P34730	273 aa	Known RBP	11.65	□□□□□ -0.54
UBA4	YHR111W	CCT3	P39077	534 aa	Known RBP	11.65	□□□□□ -0.54
UBA4	YHR111W	NOC2	P39744	710 aa	Known RBP	11.65	□□□□□ -0.54
UBA4	YHR111W	SKP2	P42843	763 aa		11.65	□□□□□ -0.54
UBA4	YHR111W	RPL17A	P05740	184 aa	Known RBP	11.64	□□□□□ -0.55
UBA4	YHR111W	HCA4	P20448	770 aa	Known RBP	11.64	□□□□□ -0.55
UBA4	YHR111W	RXT2	P38255	430 aa		11.64	□□□□□ -0.55
UBA4	YHR111W	OPY1	P38271	328 aa		11.64	□□□□□ -0.55
UBA4	YHR111W	PCI8	P40512	444 aa		11.64	□□□□□ -0.55
UBA4	YHR111W	RPL17B	P46990	184 aa	Known RBP	11.64	□□□□□ -0.55
UBA4	YHR111W	YPL034W	Q03083	165 aa		11.64	□□□□□ -0.55
UBA4	YHR111W	SWI4	P25302	1093 aa	Known RBP	11.63	□□□□□ -0.55
UBA4	YHR111W	TIM23	P32897	222 aa		11.63	□□□□□ -0.55
UBA4	YHR111W	UBP10	P53874	792 aa	Predicted RBP	11.63	□□□□□ -0.55
UBA4	YHR111W	OXR1	Q08952	273 aa		11.63	□□□□□ -0.55
UBA4	YHR111W	RNR2	P09938	399 aa	Known RBP	11.62	□□□□□ -0.55
UBA4	YHR111W	MAK11	P20484	414 aa	Known RBP	11.62	□□□□□ -0.55
UBA4	YHR111W	KTR2	P33550	425 aa		11.62	□□□□□ -0.55
UBA4	YHR111W	SUL1	P38359	859 aa		11.62	□□□□□ -0.55
UBA4	YHR111W	FIR1	P40020	876 aa		11.62	□□□□□ -0.55
UBA4	YHR111W	GDE1	Q02979	1223 aa		11.62	□□□□□ -0.55
UBA4	YHR111W	GPT2	P36148	743 aa		11.61	□□□□□ -0.55
UBA4	YHR111W	CLA4	P48562	842 aa		11.61	□□□□□ -0.55
UBA4	YHR111W	FMP30	Q02883	468 aa		11.61	□□□□□ -0.55
UBA4	YHR111W	GIS4	Q04233	774 aa		11.61	□□□□□ -0.55
UBA4	YHR111W	ARP6	Q12509	438 aa		11.61	□□□□□ -0.55
UBA4	YHR111W	SES1	P07284	462 aa	Known RBP	11.6	□□□□□ -0.55
UBA4	YHR111W	RPN10	P38886	268 aa	Known RBP	11.6	□□□□□ -0.55
UBA4	YHR111W	YFL040W	P43562	540 aa		11.6	□□□□□ -0.55
UBA4	YHR111W	YGL138C	P53122	345 aa		11.6	□□□□□ -0.55
UBA4	YHR111W	DAK1	P54838	584 aa	Known RBP	11.6	□□□□□ -0.55
UBA4	YHR111W	SMD2	Q06217	110 aa	Known RBP	11.6	□□□□□ -0.55
UBA4	YHR111W	WHI3	P34761	661 aa	Known RBP	11.6	□□□□□ -0.55
UBA4	YHR111W	FLR1	P38124	548 aa		11.6	□□□□□ -0.55
UBA4	YHR111W	UBP15	P50101	1230 aa		11.6	□□□□□ -0.55
UBA4	YHR111W	YLR407W	Q06070	228 aa		11.6	□□□□□ -0.55
UBA4	YHR111W	BNI5	P53890	448 aa	Known RBP	11.59	□□□□□ -0.55
UBA4	YHR111W	WHI4	Q07655	649 aa	Known RBP	11.59	□□□□□ -0.55
UBA4	YHR111W	RTP1	Q12751	981 aa		11.59	□□□□□ -0.55
UBA4	YHR111W	MAS2	P11914	482 aa		11.58	□□□□□ -0.56
UBA4	YHR111W	CLB5	P30283	435 aa		11.58	□□□□□ -0.56
UBA4	YHR111W	SAS3	P34218	831 aa		11.58	□□□□□ -0.56
UBA4	YHR111W	YHL017W	P38745	532 aa		11.58	□□□□□ -0.56
UBA4	YHR111W	RPS7B	P48164	190 aa	Known RBP	11.58	□□□□□ -0.56
UBA4	YHR111W	ORC4	P54791	529 aa		11.58	□□□□□ -0.56
UBA4	YHR111W	OYE2	Q03558	400 aa	Known RBP	11.58	□□□□□ -0.56
UBA4	YHR111W	CBP3	P21560	335 aa		11.57	□□□□□ -0.56
UBA4	YHR111W	SRO9	P25567	434 aa	Known RBP	11.57	□□□□□ -0.56
UBA4	YHR111W	CTF18	P49956	741 aa		11.57	□□□□□ -0.56
UBA4	YHR111W	HUL5	P53119	910 aa		11.57	□□□□□ -0.56

Retrieved 100 of 5,963 RNA–protein pairs in 100.5 ms