RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	GIS1	Q03833	894 aa		4.92	□□□□□ -1.62
SEC4	YFL005W	CLN2	P20438	545 aa		4.91	□□□□□ -1.62
SEC4	YFL005W	ORC3	P54790	616 aa		4.91	□□□□□ -1.62
SEC4	YFL005W	HTS1	P07263	546 aa	Known RBP	4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-DR6	P0CX70	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-ER1	P0CX71	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-LR2	P0CX72	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-PL	P0CX73	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-JR1	P0CX74	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-LR3	P0CX75	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-ML2	P0CX76	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	ADP1	P25371	1049 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	PET112	P33893	541 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	MAD1	P40957	749 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	OYE3	P41816	400 aa	Predicted RBP	4.9	□□□□□ -1.63
SEC4	YFL005W	HDA2	Q06629	674 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	PIN2	Q12057	282 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-GR1	Q12085	440 aa		4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.9	□□□□□ -1.63
SEC4	YFL005W	TY1A-OL	Q92392	440 aa	Known RBP	4.9	□□□□□ -1.63
SEC4	YFL005W	VPS16	Q03308	798 aa		4.89	□□□□□ -1.63
SEC4	YFL005W	DOT1	Q04089	582 aa	Known RBP	4.89	□□□□□ -1.63
SEC4	YFL005W	SQT1	P35184	431 aa		4.88	□□□□□ -1.63
SEC4	YFL005W	SHU2	P38957	223 aa		4.88	□□□□□ -1.63
SEC4	YFL005W	PIC2	P40035	300 aa		4.88	□□□□□ -1.63
SEC4	YFL005W	RSM26	P47141	266 aa		4.88	□□□□□ -1.63
SEC4	YFL005W	NOG1	Q02892	647 aa	Known RBP	4.88	□□□□□ -1.63
SEC4	YFL005W	RPS4A	P0CX35	261 aa	Known RBP	4.87	□□□□□ -1.63
SEC4	YFL005W	RPS4B	P0CX36	261 aa	Known RBP	4.87	□□□□□ -1.63
SEC4	YFL005W	HEM13	P11353	328 aa	Known RBP	4.87	□□□□□ -1.63
SEC4	YFL005W	PRP6	P19735	899 aa	Predicted RBP	4.87	□□□□□ -1.63
SEC4	YFL005W	EXO5	P38289	585 aa		4.87	□□□□□ -1.63
SEC4	YFL005W	GCV1	P48015	400 aa		4.87	□□□□□ -1.63
SEC4	YFL005W	YIG1	Q08956	461 aa		4.87	□□□□□ -1.63
SEC4	YFL005W	FLR1	P38124	548 aa		4.86	□□□□□ -1.63
SEC4	YFL005W	PEX28	P38848	579 aa		4.86	□□□□□ -1.63
SEC4	YFL005W	NNF1	P47149	201 aa		4.86	□□□□□ -1.63
SEC4	YFL005W	UTP22	P53254	1237 aa	Predicted RBP	4.86	□□□□□ -1.63
SEC4	YFL005W	ALD6	P54115	500 aa	Known RBP	4.86	□□□□□ -1.63
SEC4	YFL005W	PEX13	P80667	386 aa		4.86	□□□□□ -1.63
SEC4	YFL005W	TAF13	P11747	167 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	CDC34	P14682	295 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	MSH3	P25336	1018 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	YKL077W	P36081	392 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	NEM1	P38757	446 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	VAC8	P39968	578 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	SLS1	P42900	643 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	YGL140C	P53120	1219 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	CWC24	P53769	259 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	SSY1	Q03770	852 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	TRE1	Q08919	783 aa		4.85	□□□□□ -1.63
SEC4	YFL005W	ALG6	Q12001	544 aa	Known RBP	4.85	□□□□□ -1.63
SEC4	YFL005W	GCR1	P07261	785 aa		4.84	□□□□□ -1.63
SEC4	YFL005W	SEC23	P15303	768 aa	Known RBP	4.84	□□□□□ -1.63
SEC4	YFL005W	ORC1	P54784	914 aa	Predicted RBP	4.84	□□□□□ -1.63
SEC4	YFL005W	RTT10	Q08924	1013 aa		4.84	□□□□□ -1.63
SEC4	YFL005W	VMA4	P22203	233 aa	Known RBP	4.83	□□□□□ -1.64
SEC4	YFL005W	OCA5	P38738	679 aa		4.83	□□□□□ -1.64
SEC4	YFL005W	XKS1	P42826	600 aa		4.83	□□□□□ -1.64
SEC4	YFL005W	TMA46	Q12000	345 aa	Known RBP	4.83	□□□□□ -1.64
SEC4	YFL005W	RAD27	P26793	382 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	DUT1	P33317	147 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	RDH54	P38086	958 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	MSH4	P40965	878 aa	Predicted RBP	4.82	□□□□□ -1.64
SEC4	YFL005W	ALT1	P52893	592 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	MEC3	Q02574	474 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	MRL1	Q06815	381 aa		4.82	□□□□□ -1.64
SEC4	YFL005W	WRS1	Q12109	432 aa	Known RBP	4.82	□□□□□ -1.64
SEC4	YFL005W	ARL1	P38116	183 aa	Known RBP	4.81	□□□□□ -1.64
SEC4	YFL005W	REI1	P38344	393 aa	Predicted RBP	4.81	□□□□□ -1.64
SEC4	YFL005W	PEX7	P39108	375 aa		4.81	□□□□□ -1.64
SEC4	YFL005W	YGR053C	P53234	283 aa		4.81	□□□□□ -1.64
SEC4	YFL005W	GDE1	Q02979	1223 aa		4.81	□□□□□ -1.64
SEC4	YFL005W	LPX1	Q12405	387 aa	Known RBP	4.81	□□□□□ -1.64
SEC4	YFL005W	AIM44	Q99299	758 aa		4.81	□□□□□ -1.64
SEC4	YFL005W	MTR4	P47047	1073 aa	Known RBP	4.8	□□□□□ -1.64
SEC4	YFL005W	ENT3	P47160	408 aa		4.8	□□□□□ -1.64
SEC4	YFL005W	FAA4	P47912	694 aa	Known RBP	4.8	□□□□□ -1.64
SEC4	YFL005W	GNP1	P48813	663 aa		4.8	□□□□□ -1.64
SEC4	YFL005W	RIM8	P53179	542 aa		4.8	□□□□□ -1.64
SEC4	YFL005W	SIW14	P53965	281 aa		4.8	□□□□□ -1.64
SEC4	YFL005W	UTP5	Q04177	643 aa	Known RBP	4.8	□□□□□ -1.64
SEC4	YFL005W	GSF2	Q04697	403 aa	Known RBP	4.8	□□□□□ -1.64
SEC4	YFL005W	YVC1	Q12324	675 aa		4.8	□□□□□ -1.64
SEC4	YFL005W	AIM3	P38266	947 aa	Known RBP	4.79	□□□□□ -1.64
SEC4	YFL005W	YGR045C	P53229	120 aa		4.79	□□□□□ -1.64
SEC4	YFL005W	MRPL22	P53881	309 aa		4.79	□□□□□ -1.64
SEC4	YFL005W	EAR1	Q03212	550 aa		4.79	□□□□□ -1.64
SEC4	YFL005W	SSF2	Q12153	453 aa	Predicted RBP	4.79	□□□□□ -1.64
SEC4	YFL005W	YTA7	P40340	1379 aa		4.78	□□□□□ -1.64
SEC4	YFL005W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
SEC4	YFL005W	PRO1	P32264	428 aa		4.78	□□□□□ -1.64
SEC4	YFL005W	YJL049W	P47048	450 aa		4.78	□□□□□ -1.64
SEC4	YFL005W	ELA1	P53861	379 aa	Predicted RBP	4.78	□□□□□ -1.64
SEC4	YFL005W	NFS1	P25374	497 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	ADD66	P36040	267 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	HXT13	P39924	564 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	HXT17	P53631	564 aa		4.77	□□□□□ -1.65
SEC4	YFL005W	HXT15	P54854	567 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 50.4 ms