RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	YGL140C	P53120	1219 aa		6.13	□□□□□ -1.43
UBP9	YER098W	TAF8	Q03750	510 aa		6.13	□□□□□ -1.43
UBP9	YER098W	PMT7	Q06644	662 aa		6.13	□□□□□ -1.43
UBP9	YER098W	RNA1	P11745	407 aa	Known RBP	6.13	□□□□□ -1.43
UBP9	YER098W	SEC23	P15303	768 aa	Known RBP	6.13	□□□□□ -1.43
UBP9	YER098W	MRC1	P25588	1096 aa		6.13	□□□□□ -1.43
UBP9	YER098W	LYP1	P32487	611 aa		6.13	□□□□□ -1.43
UBP9	YER098W	RER2	P35196	286 aa		6.13	□□□□□ -1.43
UBP9	YER098W	HXT13	P39924	564 aa		6.13	□□□□□ -1.43
UBP9	YER098W	SAP155	P43612	1002 aa		6.13	□□□□□ -1.43
UBP9	YER098W	HXT17	P53631	564 aa		6.13	□□□□□ -1.43
UBP9	YER098W	HXT15	P54854	567 aa		6.13	□□□□□ -1.43
UBP9	YER098W	HEM13	P11353	328 aa	Known RBP	6.12	□□□□□ -1.43
UBP9	YER098W	IRE1	P32361	1115 aa		6.12	□□□□□ -1.43
UBP9	YER098W	YIL165C	P40446	119 aa		6.12	□□□□□ -1.43
UBP9	YER098W	MSN5	P52918	1224 aa		6.12	□□□□□ -1.43
UBP9	YER098W	YRB30	P53107	440 aa	Predicted RBP	6.12	□□□□□ -1.43
UBP9	YER098W	ITC1	P53125	1264 aa		6.12	□□□□□ -1.43
UBP9	YER098W	CUS1	Q02554	436 aa	Predicted RBP	6.12	□□□□□ -1.43
UBP9	YER098W	ATG13	Q06628	738 aa		6.12	□□□□□ -1.43
UBP9	YER098W	PCT1	P13259	424 aa		6.11	□□□□□ -1.43
UBP9	YER098W	BET3	P36149	193 aa		6.11	□□□□□ -1.43
UBP9	YER098W	KRI1	P42846	591 aa	Known RBP	6.11	□□□□□ -1.43
UBP9	YER098W	TFB2	Q02939	513 aa		6.11	□□□□□ -1.43
UBP9	YER098W	MOT2	P34909	587 aa	Known RBP	6.11	□□□□□ -1.43
UBP9	YER098W	AHP1	P38013	176 aa	Known RBP	6.11	□□□□□ -1.43
UBP9	YER098W	PBY1	P38254	753 aa		6.11	□□□□□ -1.43
UBP9	YER098W	RAD26	P40352	1085 aa		6.11	□□□□□ -1.43
UBP9	YER098W	YIR014W	P40570	242 aa		6.11	□□□□□ -1.43
UBP9	YER098W	RVB2	Q12464	471 aa	Known RBP	6.11	□□□□□ -1.43
UBP9	YER098W	NOP58	Q12499	511 aa	Known RBP	6.11	□□□□□ -1.43
UBP9	YER098W	YPK9	Q12697	1472 aa		6.1	□□□□□ -1.43
UBP9	YER098W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	6.1	□□□□□ -1.43	not detected
UBP9	YER098W	ALR2	P43553	858 aa		6.1	□□□□□ -1.43
UBP9	YER098W	HSV2	P50079	448 aa	Predicted RBP	6.1	□□□□□ -1.43
UBP9	YER098W	TY1A-DR3	Q12441	440 aa		6.1	□□□□□ -1.43
UBP9	YER098W	NUP159	P40477	1460 aa		6.1	□□□□□ -1.43
UBP9	YER098W	MSH3	P25336	1018 aa		6.1	□□□□□ -1.43
UBP9	YER098W	PDC6	P26263	563 aa	Known RBP	6.1	□□□□□ -1.43
UBP9	YER098W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	6.1	□□□□□ -1.43	not detected
UBP9	YER098W	PEX8	P53248	589 aa		6.1	□□□□□ -1.43
UBP9	YER098W	UTP8	P53276	713 aa	Known RBP	6.1	□□□□□ -1.43
UBP9	YER098W	SIW14	P53965	281 aa		6.1	□□□□□ -1.43
UBP9	YER098W	PSH1	Q12161	406 aa		6.1	□□□□□ -1.43
UBP9	YER098W	REC8	Q12188	680 aa		6.1	□□□□□ -1.43
UBP9	YER098W	AIR2	Q12476	344 aa	Known RBP	6.1	□□□□□ -1.43
UBP9	YER098W	CMR1	Q12510	522 aa	Known RBP	6.1	□□□□□ -1.43
UBP9	YER098W	IRC20	Q06554	1556 aa		6.09	□□□□□ -1.43
UBP9	YER098W	CHL1	P22516	861 aa	Predicted RBP	6.09	□□□□□ -1.43
UBP9	YER098W	RIM11	P38615	370 aa		6.09	□□□□□ -1.43
UBP9	YER098W	HLJ1	P48353	224 aa		6.09	□□□□□ -1.43
UBP9	YER098W	YGR237C	P50089	785 aa		6.09	□□□□□ -1.43
UBP9	YER098W	KIP3	P53086	805 aa	Known RBP	6.09	□□□□□ -1.43
UBP9	YER098W	TMA17	Q12513	150 aa		6.09	□□□□□ -1.43
UBP9	YER098W	DNF1	P32660	1571 aa		6.09	□□□□□ -1.43
UBP9	YER098W	TAF13	P11747	167 aa		6.09	□□□□□ -1.44
UBP9	YER098W	NOG1	Q02892	647 aa	Known RBP	6.09	□□□□□ -1.44
UBP9	YER098W	PDS5	Q04264	1277 aa		6.09	□□□□□ -1.44
UBP9	YER098W	YJR120W	P47157	116 aa		6.08	□□□□□ -1.44
UBP9	YER098W	ROD1	Q02805	837 aa		6.08	□□□□□ -1.44
UBP9	YER098W	UGO1	Q03327	502 aa		6.08	□□□□□ -1.44
UBP9	YER098W	YDL124W	Q07551	312 aa	Known RBP	6.08	□□□□□ -1.44
UBP9	YER098W	SRF1	Q12516	437 aa		6.08	□□□□□ -1.44
UBP9	YER098W	VPS15	P22219	1454 aa		6.08	□□□□□ -1.44
UBP9	YER098W	KAR1	P11927	433 aa		6.08	□□□□□ -1.44
UBP9	YER098W	INO1	P11986	533 aa		6.08	□□□□□ -1.44
UBP9	YER098W	NPR1	P22211	790 aa		6.08	□□□□□ -1.44
UBP9	YER098W	KNS1	P32350	737 aa	Predicted RBP	6.08	□□□□□ -1.44
UBP9	YER098W	MAL11	P53048	616 aa		6.08	□□□□□ -1.44
UBP9	YER098W	HED1	Q03937	162 aa		6.08	□□□□□ -1.44
UBP9	YER098W	ECM16	Q04217	1267 aa	Known RBP	6.08	□□□□□ -1.44
UBP9	YER098W	GCN2	P15442	1659 aa		6.07	□□□□□ -1.44
UBP9	YER098W	SLA1	P32790	1244 aa		6.07	□□□□□ -1.44
UBP9	YER098W	SKP1	P52286	194 aa		6.07	□□□□□ -1.44
UBP9	YER098W	NUP145	P49687	1317 aa		6.07	□□□□□ -1.44
UBP9	YER098W	LEU1	P07264	779 aa	Known RBP	6.06	□□□□□ -1.44
UBP9	YER098W	PRP9	P19736	530 aa	Known RBP	6.06	□□□□□ -1.44
UBP9	YER098W	MSP1	P28737	362 aa		6.06	□□□□□ -1.44
UBP9	YER098W	PEX6	P33760	1030 aa		6.06	□□□□□ -1.44
UBP9	YER098W	ARL1	P38116	183 aa	Known RBP	6.06	□□□□□ -1.44
UBP9	YER098W	TY3B-G	Q99315	1547 aa		6.06	□□□□□ -1.44
UBP9	YER098W	DED1	P06634	604 aa	Known RBP	6.06	□□□□□ -1.44
UBP9	YER098W	CDC45	Q08032	650 aa		6.06	□□□□□ -1.44
UBP9	YER098W	MET32	Q12041	191 aa		6.06	□□□□□ -1.44
UBP9	YER098W	NOT3	P06102	836 aa	Known RBP	6.05	□□□□□ -1.44
UBP9	YER098W	RDH54	P38086	958 aa		6.05	□□□□□ -1.44
UBP9	YER098W	FUI1	P38196	639 aa		6.05	□□□□□ -1.44
UBP9	YER098W	APM2	P38700	605 aa		6.05	□□□□□ -1.44
UBP9	YER098W	MBP1	P39678	833 aa		6.05	□□□□□ -1.44
UBP9	YER098W	GDH3	P39708	457 aa		6.05	□□□□□ -1.44
UBP9	YER098W	GEM1	P39722	662 aa		6.05	□□□□□ -1.44
UBP9	YER098W	AAD14	P42884	376 aa		6.05	□□□□□ -1.44
UBP9	YER098W	MTR4	P47047	1073 aa	Known RBP	6.05	□□□□□ -1.44
UBP9	YER098W	YNR040W	P53736	256 aa		6.05	□□□□□ -1.44
UBP9	YER098W	ALO1	P54783	526 aa	Known RBP	6.05	□□□□□ -1.44
UBP9	YER098W	UGA3	P26370	528 aa		6.05	□□□□□ -1.44
UBP9	YER098W	VPS24	P36095	224 aa	Known RBP	6.05	□□□□□ -1.44
UBP9	YER098W	VPS27	P40343	622 aa	Known RBP	6.05	□□□□□ -1.44
UBP9	YER098W	NIT1	P40447	199 aa		6.05	□□□□□ -1.44
UBP9	YER098W	PMT3	P47190	753 aa		6.05	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 43.4 ms