RNA–Protein interactions for RNA: YDR235W

PRP42, Transcript of U1 snRNP protein involved in splicing, yeast

Gene PRP42, Length 1,635 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRP42	YDR235W	RSC58	Q07979	502 aa		2.74	□□□□□ -1.97
PRP42	YDR235W	NBA1	Q08229	501 aa	Known RBP	2.74	□□□□□ -1.97
PRP42	YDR235W	HRK1	Q08732	759 aa	Known RBP	2.74	□□□□□ -1.97
PRP42	YDR235W	CYC1	P00044	109 aa	Predicted RBP	2.73	□□□□□ -1.97
PRP42	YDR235W	DOM34	P33309	386 aa		2.73	□□□□□ -1.97
PRP42	YDR235W	CHS7	P38843	316 aa		2.73	□□□□□ -1.97
PRP42	YDR235W	MNN10	P50108	393 aa	Known RBP	2.73	□□□□□ -1.97
PRP42	YDR235W	YAF9	P53930	226 aa		2.73	□□□□□ -1.97
PRP42	YDR235W	DUS4	Q06063	367 aa		2.73	□□□□□ -1.97
PRP42	YDR235W	PMT7	Q06644	662 aa		2.73	□□□□□ -1.97
PRP42	YDR235W	STE11	P23561	717 aa		2.72	□□□□□ -1.97
PRP42	YDR235W	HSE1	P38753	452 aa		2.72	□□□□□ -1.97
PRP42	YDR235W	MCM5	P29496	775 aa	Known RBP	2.71	□□□□□ -1.97
PRP42	YDR235W	NEM1	P38757	446 aa		2.71	□□□□□ -1.97
PRP42	YDR235W	NUT1	P53114	1132 aa		2.71	□□□□□ -1.97
PRP42	YDR235W	YML083C	Q04526	418 aa		2.71	□□□□□ -1.97
PRP42	YDR235W	RSA3	Q05942	220 aa	Known RBP	2.71	□□□□□ -1.97
PRP42	YDR235W	TMA10	Q06177	86 aa		2.71	□□□□□ -1.97
PRP42	YDR235W	EXO5	P38289	585 aa		2.71	□□□□□ -1.98
PRP42	YDR235W	YJL045W	P47052	634 aa		2.71	□□□□□ -1.98
PRP42	YDR235W	PHO23	P50947	330 aa		2.71	□□□□□ -1.98
PRP42	YDR235W	PLB2	Q03674	706 aa		2.71	□□□□□ -1.98
PRP42	YDR235W	FLP1	P03870	423 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	CDC20	P26309	610 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	LST4	P34239	828 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	UFD2	P54860	961 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	RXT3	Q07458	294 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	LAP2	Q10740	671 aa		2.7	□□□□□ -1.98
PRP42	YDR235W	SHU2	P38957	223 aa		2.69	□□□□□ -1.98
PRP42	YDR235W	BOL3	P39724	118 aa		2.69	□□□□□ -1.98
PRP42	YDR235W	MTR4	P47047	1073 aa	Known RBP	2.69	□□□□□ -1.98
PRP42	YDR235W	ACK1	Q07622	623 aa	Predicted RBP	2.69	□□□□□ -1.98
PRP42	YDR235W	PPM2	Q08282	695 aa		2.69	□□□□□ -1.98
PRP42	YDR235W	YSC84	P32793	468 aa		2.68	□□□□□ -1.98
PRP42	YDR235W	RVS167	P39743	482 aa	Known RBP	2.68	□□□□□ -1.98
PRP42	YDR235W	SEC26	P41810	973 aa	Known RBP	2.68	□□□□□ -1.98
PRP42	YDR235W	BDF2	Q07442	638 aa		2.68	□□□□□ -1.98
PRP42	YDR235W	KIN4	Q01919	800 aa		2.68	□□□□□ -1.98
PRP42	YDR235W	UTP5	Q04177	643 aa	Known RBP	2.68	□□□□□ -1.98
PRP42	YDR235W	BSC2	Q05611	235 aa		2.68	□□□□□ -1.98
PRP42	YDR235W	PMA1	P05030	918 aa	Known RBP	2.67	□□□□□ -1.98
PRP42	YDR235W	ATG14	P38270	344 aa		2.67	□□□□□ -1.98
PRP42	YDR235W	QNS1	P38795	714 aa	Known RBP	2.67	□□□□□ -1.98
PRP42	YDR235W	YNL011C	P53980	444 aa		2.67	□□□□□ -1.98
PRP42	YDR235W	GPB1	Q08886	897 aa		2.67	□□□□□ -1.98
PRP42	YDR235W	COQ4	O13525	335 aa		2.66	□□□□□ -1.98
PRP42	YDR235W	DEF1	P35732	738 aa	Known RBP	2.66	□□□□□ -1.98
PRP42	YDR235W	MSS4	P38994	779 aa		2.66	□□□□□ -1.98
PRP42	YDR235W	XKS1	P42826	600 aa		2.66	□□□□□ -1.98
PRP42	YDR235W	MON1	P53129	644 aa		2.66	□□□□□ -1.98
PRP42	YDR235W	RCL1	Q08096	367 aa	Predicted RBP	2.66	□□□□□ -1.98
PRP42	YDR235W	NOB1	Q08444	459 aa	Known RBP	2.66	□□□□□ -1.98
PRP42	YDR235W	OAR1	P35731	278 aa		2.65	□□□□□ -1.98
PRP42	YDR235W	CCZ1	P38273	704 aa		2.65	□□□□□ -1.98
PRP42	YDR235W	UBA2	P52488	636 aa		2.65	□□□□□ -1.98
PRP42	YDR235W	PBP1	P53297	722 aa	Known RBP	2.65	□□□□□ -1.98
PRP42	YDR235W	YNR063W	P53749	607 aa		2.65	□□□□□ -1.98
PRP42	YDR235W	RSB1	Q08417	382 aa		2.65	□□□□□ -1.98
PRP42	YDR235W	GAL10	P04397	699 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	CMP2	P14747	604 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	RSM24	Q03976	319 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	MOH1	P38191	138 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	GLO3	P38682	493 aa	Known RBP	2.64	□□□□□ -1.99
PRP42	YDR235W	ATF1	P40353	525 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	INP54	Q08227	384 aa	Known RBP	2.64	□□□□□ -1.99
PRP42	YDR235W	SPO21	Q12411	609 aa		2.64	□□□□□ -1.99
PRP42	YDR235W	RQC2	Q12532	1038 aa	Known RBP	2.64	□□□□□ -1.99
PRP42	YDR235W	CDC6	P09119	513 aa		2.63	□□□□□ -1.99
PRP42	YDR235W	DCG1	P32460	244 aa		2.63	□□□□□ -1.99
PRP42	YDR235W	CDC55	Q00362	526 aa		2.63	□□□□□ -1.99
PRP42	YDR235W	NOG1	Q02892	647 aa	Known RBP	2.63	□□□□□ -1.99
PRP42	YDR235W	YLR224W	Q05947	369 aa		2.63	□□□□□ -1.99
PRP42	YDR235W	SRM1	P21827	482 aa		2.62	□□□□□ -1.99
PRP42	YDR235W	BAP2	P38084	609 aa		2.62	□□□□□ -1.99
PRP42	YDR235W	QDR1	P40475	563 aa		2.62	□□□□□ -1.99
PRP42	YDR235W	VPS53	P47061	822 aa		2.62	□□□□□ -1.99
PRP42	YDR235W	LGE1	Q02796	332 aa	Known RBP	2.62	□□□□□ -1.99
PRP42	YDR235W	YAP6	Q03935	383 aa		2.62	□□□□□ -1.99
PRP42	YDR235W	SSA4	P22202	642 aa	Known RBP	2.61	□□□□□ -1.99
PRP42	YDR235W	MSH3	P25336	1018 aa		2.61	□□□□□ -1.99
PRP42	YDR235W	PIK1	P39104	1066 aa		2.61	□□□□□ -1.99
PRP42	YDR235W	VPS62	P53285	467 aa		2.61	□□□□□ -1.99
PRP42	YDR235W	HOS3	Q02959	697 aa	Known RBP	2.61	□□□□□ -1.99
PRP42	YDR235W	TNA1	P53322	534 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	MNL2	Q12205	849 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	VMA4	P22203	233 aa	Known RBP	2.6	□□□□□ -1.99
PRP42	YDR235W	KIP1	P28742	1111 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	RFC5	P38251	354 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	GTF1	P53260	183 aa	Predicted RBP	2.6	□□□□□ -1.99
PRP42	YDR235W	PEX13	P80667	386 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	TRS120	Q04183	1289 aa		2.6	□□□□□ -1.99
PRP42	YDR235W	EMC1	P25574	760 aa		2.59	□□□□□ -1.99
PRP42	YDR235W	GPB2	P39717	880 aa		2.59	□□□□□ -1.99
PRP42	YDR235W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	2.59	□□□□□ -1.99	not detected
PRP42	YDR235W	CUE2	P36075	443 aa	Known RBP	2.58	□□□□□ -2
PRP42	YDR235W	RKM2	Q03942	479 aa		2.58	□□□□□ -2
PRP42	YDR235W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	2.57	□□□□□ -2	not detected
PRP42	YDR235W	KIN2	P13186	1147 aa	Known RBP	2.57	□□□□□ -2
PRP42	YDR235W	ADD66	P36040	267 aa		2.57	□□□□□ -2
PRP42	YDR235W	STU2	P46675	888 aa		2.57	□□□□□ -2

Retrieved 100 of 5,963 RNA–protein pairs in 89.8 ms