RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C FAA4P47912 694 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C CWH41P53008 833 aa5.3□□□□□ -1.56
CDC48YDL126C SUT1P53032 299 aaKnown RBP5.3□□□□□ -1.56
CDC48YDL126C YOR378WQ08902 515 aa5.3□□□□□ -1.56
CDC48YDL126C KAR2P16474 682 aaKnown RBP5.29□□□□□ -1.56
CDC48YDL126C ITC1P53125 1264 aa5.29□□□□□ -1.56
CDC48YDL126C PEX8P53248 589 aa5.29□□□□□ -1.56
CDC48YDL126C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.29□□□□□ -1.56not detected
CDC48YDL126C YPL109CQ02981 657 aa5.29□□□□□ -1.56
CDC48YDL126C AUS1Q08409 1394 aa5.29□□□□□ -1.56
CDC48YDL126C THS1P04801 734 aaKnown RBP5.29□□□□□ -1.56
CDC48YDL126C STI1P15705 589 aaKnown RBP RIP-Chip data5.29□□□□□ -1.56not detected
CDC48YDL126C PRE9P23638 258 aaKnown RBP5.29□□□□□ -1.56
CDC48YDL126C SPT16P32558 1035 aaKnown RBP5.29□□□□□ -1.56
CDC48YDL126C SCD5P34758 872 aa5.29□□□□□ -1.56
CDC48YDL126C SSN3P39073 555 aa5.29□□□□□ -1.56
CDC48YDL126C FUN12P39730 1002 aaKnown RBP5.29□□□□□ -1.56
CDC48YDL126C BSC2Q05611 235 aa5.29□□□□□ -1.56
CDC48YDL126C PET111P08468 800 aa5.28□□□□□ -1.56
CDC48YDL126C PIL1P53252 339 aaKnown RBP5.28□□□□□ -1.56
CDC48YDL126C YRF1-2P40105 1681 aa5.28□□□□□ -1.56
CDC48YDL126C FLP1P03870 423 aa5.28□□□□□ -1.56
CDC48YDL126C STE5P32917 917 aa5.28□□□□□ -1.56
CDC48YDL126C PRP43P53131 767 aaKnown RBP5.28□□□□□ -1.56
CDC48YDL126C EEB1Q02891 456 aa5.28□□□□□ -1.56
CDC48YDL126C CDC45Q08032 650 aa5.28□□□□□ -1.56
CDC48YDL126C VPS5Q92331 675 aa5.28□□□□□ -1.56
CDC48YDL126C TRX2P22803 104 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C SRP40P32583 406 aaPredicted RBP5.27□□□□□ -1.57
CDC48YDL126C PRE3P38624 215 aa5.27□□□□□ -1.57
CDC48YDL126C VPS27P40343 622 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C SAM37P50110 327 aa5.27□□□□□ -1.57
CDC48YDL126C HUL5P53119 910 aa5.27□□□□□ -1.57
CDC48YDL126C EAF7P53911 425 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C TGL2P54857 326 aa5.27□□□□□ -1.57
CDC48YDL126C SAS4Q04003 481 aa5.27□□□□□ -1.57
CDC48YDL126C YDL144CQ07589 356 aa5.27□□□□□ -1.57
CDC48YDL126C IME2P32581 645 aa5.27□□□□□ -1.57
CDC48YDL126C YKL091CP33324 310 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C RKM3P38222 552 aa5.27□□□□□ -1.57
CDC48YDL126C PES4P39684 611 aa5.27□□□□□ -1.57
CDC48YDL126C SPF1P39986 1215 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C TLG1Q03322 224 aa5.27□□□□□ -1.57
CDC48YDL126C NOC3Q07896 663 aaPredicted RBP5.27□□□□□ -1.57
CDC48YDL126C TY1A-DR3Q12441 440 aa5.27□□□□□ -1.57
CDC48YDL126C RRP5Q05022 1729 aaKnown RBP5.27□□□□□ -1.57
CDC48YDL126C YIL177CP40434 1758 aa5.26□□□□□ -1.57
CDC48YDL126C YJL225CP40889 1758 aa5.26□□□□□ -1.57
CDC48YDL126C RPS24AP0CX31 135 aaKnown RBP5.26□□□□□ -1.57
CDC48YDL126C RPS24BP0CX32 135 aaKnown RBP5.26□□□□□ -1.57
CDC48YDL126C PAT1P25644 796 aaKnown RBP5.26□□□□□ -1.57
CDC48YDL126C PET112P33893 541 aa5.26□□□□□ -1.57
CDC48YDL126C MNN1P39106 762 aa5.26□□□□□ -1.57
CDC48YDL126C HXT13P39924 564 aa5.26□□□□□ -1.57
CDC48YDL126C HXT17P53631 564 aa5.26□□□□□ -1.57
CDC48YDL126C HXT15P54854 567 aa5.26□□□□□ -1.57
CDC48YDL126C INP54Q08227 384 aaKnown RBP5.26□□□□□ -1.57
CDC48YDL126C APC1P53886 1748 aa5.26□□□□□ -1.57
CDC48YDL126C CLN2P20438 545 aa5.26□□□□□ -1.57
CDC48YDL126C SPC110P32380 944 aa5.26□□□□□ -1.57
CDC48YDL126C SAP155P43612 1002 aa5.26□□□□□ -1.57
CDC48YDL126C FOL1P53848 824 aa5.26□□□□□ -1.57
CDC48YDL126C HIM1Q06674 414 aa5.26□□□□□ -1.57
CDC48YDL126C FKS3Q04952 1785 aa5.26□□□□□ -1.57
CDC48YDL126C MLF3P32047 452 aa5.25□□□□□ -1.57
CDC48YDL126C SLA1P32790 1244 aa5.25□□□□□ -1.57
CDC48YDL126C MKS1P34072 584 aa5.25□□□□□ -1.57
CDC48YDL126C MAL31P38156 614 aa5.25□□□□□ -1.57
CDC48YDL126C NMD3P38861 518 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C YEN1P40028 759 aa5.25□□□□□ -1.57
CDC48YDL126C RTR1P40084 226 aaPredicted RBP5.25□□□□□ -1.57
CDC48YDL126C PSY2P40164 858 aa5.25□□□□□ -1.57
CDC48YDL126C MAD1P40957 749 aa5.25□□□□□ -1.57
CDC48YDL126C SYH1Q02875 849 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C RPO41P13433 1351 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C MPH2P0CD99 609 aa5.25□□□□□ -1.57
CDC48YDL126C MCM5P29496 775 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C SMC1P32908 1225 aa5.25□□□□□ -1.57
CDC48YDL126C PRP40P33203 583 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C UTP7P40055 554 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C PAP2P53632 584 aaKnown RBP5.25□□□□□ -1.57
CDC48YDL126C FRK1Q03002 865 aaPredicted RBP5.25□□□□□ -1.57
CDC48YDL126C MSH6Q03834 1242 aa5.25□□□□□ -1.57
CDC48YDL126C ERP4Q12450 207 aa5.25□□□□□ -1.57
CDC48YDL126C GCR1P07261 785 aa5.24□□□□□ -1.57
CDC48YDL126C KAR1P11927 433 aa5.24□□□□□ -1.57
CDC48YDL126C MPP10P47083 593 aaKnown RBP5.24□□□□□ -1.57
CDC48YDL126C RRP46P53256 223 aaPredicted RBP5.24□□□□□ -1.57
CDC48YDL126C POB3Q04636 552 aaKnown RBP5.24□□□□□ -1.57
CDC48YDL126C EMG1Q06287 252 aaKnown RBP5.24□□□□□ -1.57
CDC48YDL126C Q0182Q9ZZW1 134 aa5.24□□□□□ -1.57
CDC48YDL126C URB1P34241 1764 aaKnown RBP5.24□□□□□ -1.57
CDC48YDL126C DPS1P04802 557 aaKnown RBP5.24□□□□□ -1.57
CDC48YDL126C BSD2P38356 321 aa5.24□□□□□ -1.57
CDC48YDL126C DAL4Q04895 635 aa5.24□□□□□ -1.57
CDC48YDL126C DFG5Q05031 458 aa5.24□□□□□ -1.57
CDC48YDL126C YCS4Q06156 1176 aa5.24□□□□□ -1.57
CDC48YDL126C OPI10Q08202 246 aa5.24□□□□□ -1.57
CDC48YDL126C RNA1P11745 407 aaKnown RBP5.23□□□□□ -1.57
CDC48YDL126C RAD27P26793 382 aa5.23□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 12.2 ms