RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 ZNF330Q9Y3S2 320 aaPredicted RBP10.54□□□□□ -0.72
LIG4-204ENST00000611712 CCDC9Q9Y3X0 531 aaKnown RBP10.54□□□□□ -0.72
LIG4-204ENST00000611712 MLH3Q9UHC1 1453 aa10.54□□□□□ -0.72
LIG4-204ENST00000611712 G3BP1Q13283 466 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG4-204ENST00000611712 ESCO1Q5FWF5 840 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 CNTROBQ8N137 903 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 PHF23Q9BUL5 403 aaPredicted RBP10.53□□□□□ -0.72
LIG4-204ENST00000611712 SMC3Q9UQE7 1217 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 YEATS2Q9ULM3 1422 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 SRGAP3O43295 1099 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 DDX58O95786 925 aaKnown RBP10.53□□□□□ -0.72
LIG4-204ENST00000611712 SDSP20132 328 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 MX1P20591 662 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 DCTPP1Q9H773 170 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 XRCC6P12956 609 aaKnown RBP eCLIP10.53□□□□□ -0.72
LIG4-204ENST00000611712 FLIIQ13045 1269 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 TSHZ3Q63HK5 1081 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 DRC7Q8IY82 874 aa10.53□□□□□ -0.72
LIG4-204ENST00000611712 USHBP1Q8N6Y0 703 aa10.52□□□□□ -0.72
LIG4-204ENST00000611712 HSP90B1P14625 803 aaKnown RBP10.52□□□□□ -0.73
LIG4-204ENST00000611712 RBM25P49756 843 aaKnown RBP10.52□□□□□ -0.73
LIG4-204ENST00000611712 ZNF530Q6P9A1 599 aaPredicted RBP10.52□□□□□ -0.73
LIG4-204ENST00000611712 ESPNB1AK53 854 aa10.52□□□□□ -0.73
LIG4-204ENST00000611712 NUTM1Q86Y26 1132 aa10.52□□□□□ -0.73
LIG4-204ENST00000611712 PLEKHM2Q8IWE5 1019 aa10.52□□□□□ -0.73
LIG4-204ENST00000611712 PANK2Q9BZ23 570 aa10.52□□□□□ -0.73
LIG4-204ENST00000611712 UPF3BQ9BZI7 483 aaKnown RBP10.52□□□□□ -0.73
LIG4-204ENST00000611712 MBD3O95983 291 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 TAF7Q15545 349 aaPredicted RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 PLEKHO1Q53GL0 409 aaPredicted RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 LRRFIP2Q9Y608 721 aaKnown RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 RNF17Q9BXT8 1623 aaKnown RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 USP19O94966 1318 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 VPS37CA5D8V6 355 aaPredicted RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 FOXO3O43524 673 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 NEO1Q92859 1461 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 TNRQ92752 1358 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 CEP85Q6P2H3 762 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 CCDC173Q0VFZ6 552 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 HSP90AA2PQ14568 343 aaPredicted RBP10.51□□□□□ -0.73
LIG4-204ENST00000611712 RIC3Q7Z5B4 369 aa10.51□□□□□ -0.73
LIG4-204ENST00000611712 ABCA6Q8N139 1617 aa10.5□□□□□ -0.73
LIG4-204ENST00000611712 EDC4Q6P2E9 1401 aaKnown RBP10.5□□□□□ -0.73
LIG4-204ENST00000611712 BAG4O95429 457 aaKnown RBP10.5□□□□□ -0.73
LIG4-204ENST00000611712 MTHFSDQ2M296 383 aaKnown RBP10.5□□□□□ -0.73
LIG4-204ENST00000611712 RAPGEF4Q8WZA2 1011 aa10.5□□□□□ -0.73
LIG4-204ENST00000611712 CHAF1AQ13111 956 aaPredicted RBP10.49□□□□□ -0.73
LIG4-204ENST00000611712 TTC5Q8N0Z6 440 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 ARID3AQ99856 593 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 NLRP2Q9NX02 1062 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 ZMYM3Q14202 1370 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 CLASP1Q7Z460 1538 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 GORABQ5T7V8 394 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 OTUD7AQ8TE49 926 aaPredicted RBP10.49□□□□□ -0.73
LIG4-204ENST00000611712 PDE1AP54750 535 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 ABCC3O15438 1527 aa10.49□□□□□ -0.73
LIG4-204ENST00000611712 HTATSF1O43719 755 aaKnown RBP10.48□□□□□ -0.73
LIG4-204ENST00000611712 RBM33Q96EV2 1170 aaKnown RBP10.48□□□□□ -0.73
LIG4-204ENST00000611712 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.48□□□□□ -0.73
LIG4-204ENST00000611712 BTBD11A6QL63 1104 aa10.48□□□□□ -0.73
LIG4-204ENST00000611712 RAB3GAP1Q15042 981 aa10.48□□□□□ -0.73
LIG4-204ENST00000611712 RNF20Q5VTR2 975 aa10.48□□□□□ -0.73
LIG4-204ENST00000611712 CWC27Q6UX04 472 aaKnown RBP10.48□□□□□ -0.73
LIG4-204ENST00000611712 CHL1O00533 1208 aa10.48□□□□□ -0.73
LIG4-204ENST00000611712 XPCQ01831 940 aaPredicted RBP10.47□□□□□ -0.73
LIG4-204ENST00000611712 MAP3K19Q56UN5 1328 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 G2E3Q7L622 706 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 KIF1BPQ96EK5 621 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 FSD1Q9BTV5 496 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 FIBPO43427 364 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 EYA1Q99502 592 aa10.47□□□□□ -0.73
LIG4-204ENST00000611712 ABCC4O15439 1325 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 WDR33Q9C0J8 1336 aaKnown RBP10.46□□□□□ -0.73
LIG4-204ENST00000611712 H3BQV1 296 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 IFFO2Q5TF58 517 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 ANTXR1Q9H6X2 564 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 TTC21AQ8NDW8 1320 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 HECW2Q9P2P5 1572 aa10.46□□□□□ -0.73
LIG4-204ENST00000611712 KLHL40Q2TBA0 621 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 FAM184AQ8NB25 1140 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 SIL1Q9H173 461 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 IQGAP1P46940 1657 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 SYCE3A1L190 88 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 TAF7LQ5H9L4 462 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.46□□□□□ -0.74
LIG4-204ENST00000611712 USP26Q9BXU7 913 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 PHF8Q9UPP1 1060 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 ADGRB3O60242 1522 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 MSH6P52701 1360 aa10.46□□□□□ -0.74
LIG4-204ENST00000611712 RAB11FIP3O75154 756 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 ERC1Q8IUD2 1116 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 TSPY26PQ9H489 355 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 MPRIPQ6WCQ1 1025 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 PPP1R42Q7Z4L9 355 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 CEP152O94986 1710 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 ANXA1P04083 346 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 AACSQ86V21 672 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 DNAAF4Q8WXU2 420 aa10.45□□□□□ -0.74
LIG4-204ENST00000611712 CFAP74Q9C0B2 1584 aa10.44□□□□□ -0.74
LIG4-204ENST00000611712 GOLGA6L6A8MZA4 724 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms