RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NSD2O96028 1365 aa13.27□□□□□ -0.29
CLK3-226ENST00000569406 MCCP23508 829 aa13.27□□□□□ -0.29
CLK3-226ENST00000569406 SAFB2Q14151 953 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLK3-226ENST00000569406 EFCC1Q9HA90 598 aa13.27□□□□□ -0.29
CLK3-226ENST00000569406 CGNL1Q0VF96 1302 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 GOLIM4O00461 696 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 MORC1Q86VD1 984 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 SIRT1Q96EB6 747 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 PRAM1Q96QH2 718 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 TULP2O00295 520 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 PLEKHF1Q96S99 279 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 BCL2L12Q9HB09 334 aa13.26□□□□□ -0.29
CLK3-226ENST00000569406 FEZ2Q9UHY8 353 aaPredicted RBP13.26□□□□□ -0.29
CLK3-226ENST00000569406 IRF6O14896 467 aa13.25□□□□□ -0.29
CLK3-226ENST00000569406 HS1BP3Q53T59 392 aa13.25□□□□□ -0.29
CLK3-226ENST00000569406 FYB1O15117 783 aa13.25□□□□□ -0.29
CLK3-226ENST00000569406 HMGN5P82970 282 aaKnown RBP13.25□□□□□ -0.29
CLK3-226ENST00000569406 PNPLA6Q8IY17 1366 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 NINLQ9Y2I6 1382 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 GABPB1Q06547 395 aaPredicted RBP13.24□□□□□ -0.29
CLK3-226ENST00000569406 SMC4Q9NTJ3 1288 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 CEP83Q9Y592 693 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 KNDC1Q76NI1 1749 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 SLFN14P0C7P3 912 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 TCP11L2Q8N4U5 519 aa13.24□□□□□ -0.29
CLK3-226ENST00000569406 CDC42BPGQ6DT37 1551 aa13.23□□□□□ -0.29
CLK3-226ENST00000569406 SEMA3FQ13275 785 aa13.23□□□□□ -0.29
CLK3-226ENST00000569406 TPRNQ4KMQ1 711 aa13.23□□□□□ -0.29
CLK3-226ENST00000569406 RRP7AQ9Y3A4 280 aaKnown RBP13.23□□□□□ -0.29
CLK3-226ENST00000569406 OGFRQ9NZT2 677 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 UBR1Q8IWV7 1749 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 RUNDC1Q96C34 613 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 MINK1Q8N4C8 1332 aaPredicted RBP13.22□□□□□ -0.29
CLK3-226ENST00000569406 METP08581 1390 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 KIAA2012Q0VF49 1180 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 CCDC27Q2M243 656 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 PPP6R1Q9UPN7 881 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 RIMS2Q9UQ26 1411 aa13.22□□□□□ -0.29
CLK3-226ENST00000569406 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.21□□□□□ -0.29
CLK3-226ENST00000569406 PRIMPOLQ96LW4 560 aa13.21□□□□□ -0.29
CLK3-226ENST00000569406 MAP2P11137 1827 aaKnown RBP13.21□□□□□ -0.3
CLK3-226ENST00000569406 SKOR2Q2VWA4 1001 aaPredicted RBP13.21□□□□□ -0.3
CLK3-226ENST00000569406 NCAPGQ9BPX3 1015 aa13.21□□□□□ -0.3
CLK3-226ENST00000569406 HSP90AB3PQ58FF7 597 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 GBP4Q96PP9 640 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 FEZ1Q99689 392 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 TNNQ9UQP3 1299 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 ATAD2Q6PL18 1390 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 VIRMAQ69YN4 1812 aaKnown RBP13.2□□□□□ -0.3
CLK3-226ENST00000569406 CLSTN1O94985 981 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 CCDC172P0C7W6 258 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 WAPLQ7Z5K2 1190 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 GGNBP2Q9H3C7 697 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 SH3BP1Q9Y3L3 701 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 CPSF1Q10570 1443 aaKnown RBP13.2□□□□□ -0.3
CLK3-226ENST00000569406 MON2Q7Z3U7 1717 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 RNF217Q8TC41 542 aa13.2□□□□□ -0.3
CLK3-226ENST00000569406 ZBTB12Q9Y330 459 aaPredicted RBP13.19□□□□□ -0.3
CLK3-226ENST00000569406 MCM5P33992 734 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 SRPK2P78362 688 aaKnown RBP13.19□□□□□ -0.3
CLK3-226ENST00000569406 CDK19Q9BWU1 502 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 CCDC39Q9UFE4 941 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 AKAP12Q02952 1782 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 IGHDP01880 384 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 RBM25P49756 843 aaKnown RBP13.19□□□□□ -0.3
CLK3-226ENST00000569406 TRIM35Q9UPQ4 493 aa13.19□□□□□ -0.3
CLK3-226ENST00000569406 DDX49Q9Y6V7 483 aaKnown RBP13.19□□□□□ -0.3
CLK3-226ENST00000569406 RLBP1P12271 317 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 RARSP54136 660 aaKnown RBP13.18□□□□□ -0.3
CLK3-226ENST00000569406 TERF2Q15554 542 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 TECPR2O15040 1411 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 DHX16O60231 1041 aaKnown RBP13.18□□□□□ -0.3
CLK3-226ENST00000569406 BRPF1P55201 1214 aaPredicted RBP13.18□□□□□ -0.3
CLK3-226ENST00000569406 C3P01024 1663 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 CPS1P31327 1500 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 ZMYM3Q14202 1370 aa13.18□□□□□ -0.3
CLK3-226ENST00000569406 FBLN1P23142 703 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 SATB1Q01826 763 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 ATP7BP35670 1465 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 DNAJC21Q5F1R6 531 aaKnown RBP13.17□□□□□ -0.3
CLK3-226ENST00000569406 WDR63Q8IWG1 891 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 CABP1Q9NZU7 370 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 LRRC7Q96NW7 1537 aa13.17□□□□□ -0.3
CLK3-226ENST00000569406 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.17□□□□□ -0.3
CLK3-226ENST00000569406 TNPO1Q92973 898 aaKnown RBP13.17□□□□□ -0.3
CLK3-226ENST00000569406 GYS2P54840 703 aa13.16□□□□□ -0.3
CLK3-226ENST00000569406 NRKQ7Z2Y5 1582 aa13.16□□□□□ -0.3
CLK3-226ENST00000569406 RASSF4Q9H2L5 321 aa13.16□□□□□ -0.3
CLK3-226ENST00000569406 MFAP1P55081 439 aaKnown RBP13.15□□□□□ -0.3
CLK3-226ENST00000569406 RAD51AP2Q09MP3 1159 aa13.15□□□□□ -0.3
CLK3-226ENST00000569406 ICE2Q659A1 982 aa13.15□□□□□ -0.3
CLK3-226ENST00000569406 TOPAZ1Q8N9V7 1692 aa13.15□□□□□ -0.3
CLK3-226ENST00000569406 TDO2P48775 406 aa13.15□□□□□ -0.3
CLK3-226ENST00000569406 PANK1Q8TE04 598 aa13.15□□□□□ -0.3
CLK3-226ENST00000569406 NOP2P46087 812 aaKnown RBP13.14□□□□□ -0.31
CLK3-226ENST00000569406 HNRNPH2P55795 449 aaKnown RBP13.14□□□□□ -0.31
CLK3-226ENST00000569406 PDE3AQ14432 1141 aa13.14□□□□□ -0.31
CLK3-226ENST00000569406 ADAMTS13Q76LX8 1427 aa13.14□□□□□ -0.31
CLK3-226ENST00000569406 FAM212AQ96EL1 285 aa13.14□□□□□ -0.31
CLK3-226ENST00000569406 NCKAP5LQ9HCH0 1330 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms