RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 USP16Q9Y5T5 823 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 LRRIQ1Q96JM4 1722 aa8.69□□□□□ -1.02
LIMCH1-207ENST00000508466 VIRMAQ69YN4 1812 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 VPS37CA5D8V6 355 aaPredicted RBP8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 SIRT1Q96EB6 747 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 TRAK1Q9UPV9 953 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 LRRFIP2Q9Y608 721 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 MX1P20591 662 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 PDE6BP35913 854 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 FOSBP53539 338 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 CEBPZQ03701 1054 aaKnown RBP8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 CCDC183Q5T5S1 534 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 PPIP5K1Q6PFW1 1433 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 GRIN2BQ13224 1484 aa8.68□□□□□ -1.02
LIMCH1-207ENST00000508466 ZSCAN25Q6NSZ9 544 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 CCDC144AA2RUR9 1427 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 PRAG1Q86YV5 1406 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 KIF14Q15058 1648 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 SMTNL1A8MU46 457 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 MYO1CO00159 1063 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 HAP1P54257 671 aaPredicted RBP8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 UHRF1BP1Q6BDS2 1440 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 ISM2Q6H9L7 571 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 RASSF4Q9H2L5 321 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 RABEP2Q9H5N1 569 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 FAM135AQ9P2D6 1515 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 POLKQ9UBT6 870 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 HMOX1P09601 288 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 CYP2C19P33261 490 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 INTS3Q68E01 1043 aaKnown RBP8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 WDR63Q8IWG1 891 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 GGNBP2Q9H3C7 697 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 ZSWIM4Q9H7M6 989 aa8.67□□□□□ -1.02
LIMCH1-207ENST00000508466 COL17A1Q9UMD9 1497 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 WDR7Q9Y4E6 1490 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 PDS5BQ9NTI5 1447 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 LIG1P18858 919 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 LMAN1P49257 510 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 DCTN1Q14203 1278 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 ANO6Q4KMQ2 910 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 TTC22Q5TAA0 569 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 CCAR2Q8N163 923 aaKnown RBP8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 ZNF397Q8NF99 534 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 DNAJC25Q9H1X3 360 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 TRIM35Q9UPQ4 493 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 ANKRD30AQ9BXX3 1397 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 PHF14O94880 888 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 FBLN2P98095 1184 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 CT47A1Q5JQC4 288 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 TMEM132EQ6IEE7 984 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 IL25Q9H293 177 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 CLIP2Q9UDT6 1046 aa8.66□□□□□ -1.02
LIMCH1-207ENST00000508466 TMPOP42166 694 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 PLA2G4AP47712 749 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 CLCN6P51797 869 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 DHX8Q14562 1220 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 PTPN14Q15678 1187 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 ARHGAP29Q52LW3 1261 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 ZKSCAN7Q9P0L1 754 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 GCC2Q8IWJ2 1684 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 ECM2O94769 699 aaPredicted RBP8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 NOP2P46087 812 aaKnown RBP8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 SLC4A10Q6U841 1118 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 NECAB1Q8N987 351 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 TCEANC2Q96MN5 208 aa8.65□□□□□ -1.02
LIMCH1-207ENST00000508466 IPO8O15397 1037 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 PHACTR2O75167 634 aa8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 TRHP20396 242 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 BMS1Q14692 1282 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 CWC27Q6UX04 472 aaKnown RBP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 FMNL2Q96PY5 1086 aa8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 RNF216Q9NWF9 866 aaPredicted RBP8.65□□□□□ -1.03
LIMCH1-207ENST00000508466 TCOF1Q13428 1488 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 ROCK1Q13464 1354 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 EHBP1L1Q8N3D4 1523 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 GOLGA6L6A8MZA4 724 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 IFIT2P09913 472 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 SKILP12757 684 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 GNL2Q13823 731 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 ZSCAN26Q16670 478 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 BANK1Q8NDB2 785 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 CBX8Q9HC52 389 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 FHOD1Q9Y613 1164 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 EPRSP07814 1512 aaKnown RBP8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 TCHHQ07283 1943 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 SYT1P21579 422 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 PPARDQ03181 441 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 GOLGA8FQ08AF8 430 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 GOLGA8DPQ0D2H9 430 aa8.64□□□□□ -1.03
LIMCH1-207ENST00000508466 PNMA6AP0CW24 399 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 CHRM1P11229 460 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 UNC5CLQ8IV45 518 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 CCDC83Q8IWF9 413 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 FAM83GA6ND36 823 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 LARGE1O95461 756 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 PSEN1P49768 467 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 LMOD3Q0VAK6 560 aa8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 COL9A3Q14050 684 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-207ENST00000508466 PACS2Q86VP3 889 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms