RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-222	ENST00000508238	CD163L1	Q9NR16	1453 aa		11.21	□□□□□ -0.61
UBE2D3-222	ENST00000508238	USP31	Q70CQ4	1352 aa		11.21	□□□□□ -0.61
UBE2D3-222	ENST00000508238	SF3B2	Q13435	895 aa	Known RBP	11.21	□□□□□ -0.61
UBE2D3-222	ENST00000508238	SLC12A5	Q9H2X9	1139 aa		11.21	□□□□□ -0.61
UBE2D3-222	ENST00000508238	COL18A1	P39060	1754 aa		11.21	□□□□□ -0.62
UBE2D3-222	ENST00000508238	COL5A2	P05997	1499 aa	Predicted RBP	11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	NINL	Q9Y2I6	1382 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TIE1	P35590	1138 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	FAM196A	Q6ZSG2	479 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TMC1	Q8TDI8	760 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TERF2IP	Q9NYB0	399 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	MON2	Q7Z3U7	1717 aa		11.2	□□□□□ -0.62
UBE2D3-222	ENST00000508238	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	DEFB132	Q7Z7B7	95 aa		11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	MFRP	Q9BY79	579 aa		11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	USP35	Q9P2H5	1018 aa		11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	AXIN2	Q9Y2T1	843 aa		11.19	□□□□□ -0.62
UBE2D3-222	ENST00000508238	CRB1	P82279	1406 aa		11.18	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TTLL13P	A6NNM8	815 aa		11.18	□□□□□ -0.62
UBE2D3-222	ENST00000508238	GOLGA2	Q08379	1002 aa		11.18	□□□□□ -0.62
UBE2D3-222	ENST00000508238	VSIG10	Q8N0Z9	540 aa		11.18	□□□□□ -0.62
UBE2D3-222	ENST00000508238	EDC4	Q6P2E9	1401 aa	Known RBP	11.18	□□□□□ -0.62
UBE2D3-222	ENST00000508238	WDR17	Q8IZU2	1322 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	C11orf95	C9JLR9	678 aa	Predicted RBP	11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	SOX12	O15370	315 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	BAG6	P46379	1132 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	PDE3B	Q13370	1112 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	FAM182B	Q5T319	152 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	NFAT5	O94916	1531 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	USP54	Q70EL1	1684 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238	DISP2	A7MBM2	1401 aa		11.17	□□□□□ -0.62
UBE2D3-222	ENST00000508238		A0A1W2PP64	1363 aa		11.16	□□□□□ -0.62
UBE2D3-222	ENST00000508238	ABCC6	O95255	1503 aa		11.16	□□□□□ -0.62
UBE2D3-222	ENST00000508238	NME9	Q86XW9	330 aa		11.16	□□□□□ -0.62
UBE2D3-222	ENST00000508238	CDCA7	Q9BWT1	371 aa	Predicted RBP	11.16	□□□□□ -0.62
UBE2D3-222	ENST00000508238	USP47	Q96K76	1375 aa		11.16	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TMF1	P82094	1093 aa		11.15	□□□□□ -0.62
UBE2D3-222	ENST00000508238	TOM1L2	Q6ZVM7	507 aa		11.15	□□□□□ -0.62
UBE2D3-222	ENST00000508238	CARD10	Q9BWT7	1032 aa		11.15	□□□□□ -0.62
UBE2D3-222	ENST00000508238	PCGF6	Q9BYE7	350 aa		11.15	□□□□□ -0.62
UBE2D3-222	ENST00000508238	RGPD1	P0DJD0	1748 aa		11.15	□□□□□ -0.63
UBE2D3-222	ENST00000508238	ZBTB7C	A1YPR0	619 aa		11.14	□□□□□ -0.63
UBE2D3-222	ENST00000508238	CDCA8	Q53HL2	280 aa		11.14	□□□□□ -0.63
UBE2D3-222	ENST00000508238	PARP4	Q9UKK3	1724 aa	Known RBP	11.14	□□□□□ -0.63
UBE2D3-222	ENST00000508238	RGPD5	Q99666	1765 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	OVOS2	A0A0J9YW53	1432 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	OVOS2	Q6IE36	1432 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	TRIM37	O94972	964 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	EN1	Q05925	392 aa	Predicted RBP	11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	MKRN3	Q13064	507 aa	Known RBP	11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	CAMKK2	Q96RR4	588 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	ANKRD36B	Q8N2N9	1353 aa		11.13	□□□□□ -0.63
UBE2D3-222	ENST00000508238	DDB1	Q16531	1140 aa		11.12	□□□□□ -0.63
UBE2D3-222	ENST00000508238	FBXO22	Q8NEZ5	403 aa		11.12	□□□□□ -0.63
UBE2D3-222	ENST00000508238	PARD3	Q8TEW0	1356 aa		11.12	□□□□□ -0.63
UBE2D3-222	ENST00000508238	BCL9	O00512	1426 aa		11.11	□□□□□ -0.63
UBE2D3-222	ENST00000508238	CSB-PGBD3	P0DP91	1061 aa		11.11	□□□□□ -0.63
UBE2D3-222	ENST00000508238	TRIM35	Q9UPQ4	493 aa		11.11	□□□□□ -0.63
UBE2D3-222	ENST00000508238	TNS1	Q9HBL0	1735 aa	Known RBP	11.11	□□□□□ -0.63
UBE2D3-222	ENST00000508238	CCDC7	Q96M83	1385 aa		11.11	□□□□□ -0.63
UBE2D3-222	ENST00000508238	ERBB3	P21860	1342 aa		11.1	□□□□□ -0.63
UBE2D3-222	ENST00000508238	APBA3	O96018	575 aa		11.1	□□□□□ -0.63
UBE2D3-222	ENST00000508238	IP6K1	Q92551	441 aa		11.1	□□□□□ -0.63
UBE2D3-222	ENST00000508238	COG3	Q96JB2	828 aa		11.1	□□□□□ -0.63
UBE2D3-222	ENST00000508238	OVOS2	A0A0G2JMS6	1433 aa		11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	PEAK1	Q9H792	1746 aa		11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	KAT6B	Q8WYB5	2073 aa		11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	LTN1	O94822	1766 aa		11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	FYB1	O15117	783 aa		11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	ATN1	P54259	1190 aa	Predicted RBP	11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	MARCH10	Q8NA82	808 aa	Predicted RBP	11.09	□□□□□ -0.63
UBE2D3-222	ENST00000508238	EXOC5	O00471	708 aa		11.08	□□□□□ -0.64
UBE2D3-222	ENST00000508238	ATMIN	O43313	823 aa	Predicted RBP	11.08	□□□□□ -0.64
UBE2D3-222	ENST00000508238	PPP1R37	O75864	691 aa		11.08	□□□□□ -0.64
UBE2D3-222	ENST00000508238	EZH2	Q15910	746 aa	Known RBP	11.08	□□□□□ -0.64
UBE2D3-222	ENST00000508238	LRRC37A3	O60309	1634 aa		11.08	□□□□□ -0.64
UBE2D3-222	ENST00000508238	SBF2	Q86WG5	1849 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	WNK3	Q9BYP7	1800 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	PLSCR1	O15162	318 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	CCER1	Q8TC90	406 aa	Predicted RBP	11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	ANKRD24	Q8TF21	1146 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	NLRP2	Q9NX02	1062 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	MAP3K19	Q56UN5	1328 aa		11.07	□□□□□ -0.64
UBE2D3-222	ENST00000508238	IL2RB	P14784	551 aa		11.06	□□□□□ -0.64
UBE2D3-222	ENST00000508238	ASTL	Q6HA08	431 aa	Predicted RBP	11.06	□□□□□ -0.64
UBE2D3-222	ENST00000508238	MS4A4A	Q96JQ5	239 aa		11.06	□□□□□ -0.64
UBE2D3-222	ENST00000508238	CARD14	Q9BXL6	1004 aa		11.06	□□□□□ -0.64
UBE2D3-222	ENST00000508238	HOXC9	P31274	260 aa		11.05	□□□□□ -0.64
UBE2D3-222	ENST00000508238	PSD	A5PKW4	1024 aa	Predicted RBP	11.04	□□□□□ -0.64
UBE2D3-222	ENST00000508238	AMPH	P49418	695 aa		11.04	□□□□□ -0.64
UBE2D3-222	ENST00000508238	EIF4G2	P78344	907 aa	Known RBP eCLIP	11.04	□□□□□ -0.64
UBE2D3-222	ENST00000508238	GGNBP2	Q9H3C7	697 aa		11.04	□□□□□ -0.64
UBE2D3-222	ENST00000508238	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	11.04	□□□□□ -0.64
UBE2D3-222	ENST00000508238	RTL1	A6NKG5	1358 aa		11.03	□□□□□ -0.64
UBE2D3-222	ENST00000508238	KIF24	Q5T7B8	1368 aa		11.03	□□□□□ -0.64
UBE2D3-222	ENST00000508238	TNS2	Q63HR2	1409 aa		11.03	□□□□□ -0.64
UBE2D3-222	ENST00000508238	FBLN1	P23142	703 aa		11.03	□□□□□ -0.64
UBE2D3-222	ENST00000508238	R3HDM1	Q15032	1099 aa	Known RBP	11.03	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms