RNA–Protein interactions for RNA: ENST00000508238.5

UBE2D3-222, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-222ENST00000508238 AEBP2Q6ZN18 517 aaPredicted RBP22.36■■□□□ 1.17
UBE2D3-222ENST00000508238 CHIC1Q5VXU3 224 aa22.03■■□□□ 1.12
UBE2D3-222ENST00000508238 NISCHQ9Y2I1 1504 aa19.66■□□□□ 0.74
UBE2D3-222ENST00000508238 PHF23Q9BUL5 403 aaPredicted RBP19.43■□□□□ 0.7
UBE2D3-222ENST00000508238 SENP3Q9H4L4 574 aaPredicted RBP19.04■□□□□ 0.64
UBE2D3-222ENST00000508238 PLPPR3Q6T4P5 718 aa17.99■□□□□ 0.47
UBE2D3-222ENST00000508238 FOXD1Q16676 465 aa17.76■□□□□ 0.43
UBE2D3-222ENST00000508238 CCDC180Q9P1Z9 1646 aa17.55■□□□□ 0.4
UBE2D3-222ENST00000508238 ABCC9O60706 1549 aa17.36■□□□□ 0.37
UBE2D3-222ENST00000508238 ADRA2BP18089 450 aa17.09■□□□□ 0.33
UBE2D3-222ENST00000508238 PPP6R1Q9UPN7 881 aa17.08■□□□□ 0.32
UBE2D3-222ENST00000508238 POTEDQ86YR6 584 aa16.83■□□□□ 0.28
UBE2D3-222ENST00000508238 MSH5O43196 834 aa16.75■□□□□ 0.27
UBE2D3-222ENST00000508238 RB1CC1Q8TDY2 1594 aa16.63■□□□□ 0.25
UBE2D3-222ENST00000508238 PIAS4Q8N2W9 510 aaPredicted RBP16.6■□□□□ 0.25
UBE2D3-222ENST00000508238 NACADO15069 1562 aa16.6■□□□□ 0.25
UBE2D3-222ENST00000508238 DCAF8L2P0C7V8 631 aa16.48■□□□□ 0.23
UBE2D3-222ENST00000508238 MYO15BQ96JP2 1530 aa16.47■□□□□ 0.23
UBE2D3-222ENST00000508238 ZCCHC6Q5VYS8 1495 aaKnown RBP16.32■□□□□ 0.2
UBE2D3-222ENST00000508238 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
UBE2D3-222ENST00000508238 UNC13AQ9UPW8 1703 aa16.22■□□□□ 0.19
UBE2D3-222ENST00000508238 PABPN1Q86U42 306 aaKnown RBP eCLIP16.21■□□□□ 0.19
UBE2D3-222ENST00000508238 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
UBE2D3-222ENST00000508238 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.17
UBE2D3-222ENST00000508238 SHROOM4Q9ULL8 1493 aa16■□□□□ 0.15
UBE2D3-222ENST00000508238 SCRIBQ14160 1630 aa15.94■□□□□ 0.14
UBE2D3-222ENST00000508238 PPP4R3CPQ6ZMV5 832 aa15.9■□□□□ 0.14
UBE2D3-222ENST00000508238 KCNA4P22459 653 aa15.79■□□□□ 0.12
UBE2D3-222ENST00000508238 EIF4G1Q04637 1599 aaKnown RBP15.72■□□□□ 0.11
UBE2D3-222ENST00000508238 CC2D2AQ9P2K1 1620 aa15.71■□□□□ 0.11
UBE2D3-222ENST00000508238 CECR2Q9BXF3 1484 aa15.65■□□□□ 0.1
UBE2D3-222ENST00000508238 SCAF1Q9H7N4 1312 aaKnown RBP15.59■□□□□ 0.09
UBE2D3-222ENST00000508238 NCBP3Q53F19 620 aaKnown RBP15.54■□□□□ 0.08
UBE2D3-222ENST00000508238 MAPK8IP2Q13387 824 aaPredicted RBP15.45■□□□□ 0.06
UBE2D3-222ENST00000508238 CNKSR2Q8WXI2 1034 aa15.39■□□□□ 0.05
UBE2D3-222ENST00000508238 NCAPD3P42695 1498 aa15.34■□□□□ 0.05
UBE2D3-222ENST00000508238 NPM3O75607 178 aaKnown RBP15.32■□□□□ 0.04
UBE2D3-222ENST00000508238 ATAD2BQ9ULI0 1458 aa15.28■□□□□ 0.04
UBE2D3-222ENST00000508238 SMARCA4P51532 1647 aa15.27■□□□□ 0.03
UBE2D3-222ENST00000508238 SMARCA2P51531 1590 aa15.24■□□□□ 0.03
UBE2D3-222ENST00000508238 BAZ1AQ9NRL2 1556 aaPredicted RBP15.24■□□□□ 0.03
UBE2D3-222ENST00000508238 HMGXB3Q12766 1538 aa15.2■□□□□ 0.02
UBE2D3-222ENST00000508238 PEG3Q9GZU2 1588 aa15.18■□□□□ 0.02
UBE2D3-222ENST00000508238 MROH2BQ7Z745 1585 aa15.13■□□□□ 0.01
UBE2D3-222ENST00000508238 DMRT2Q9Y5R5 561 aa15.13■□□□□ 0.01
UBE2D3-222ENST00000508238 BAZ1BQ9UIG0 1483 aaKnown RBP15.11■□□□□ 0.01
UBE2D3-222ENST00000508238 SLC4A1APQ9BWU0 796 aaKnown RBP15.08■□□□□ 0
UBE2D3-222ENST00000508238 RNF216Q9NWF9 866 aaPredicted RBP15.03■□□□□ -0
UBE2D3-222ENST00000508238 ERCC6Q03468 1493 aa14.98□□□□□ -0.01
UBE2D3-222ENST00000508238 NESP48681 1621 aa14.96□□□□□ -0.01
UBE2D3-222ENST00000508238 CUX2O14529 1486 aa14.95□□□□□ -0.02
UBE2D3-222ENST00000508238 EHMT2Q96KQ7 1210 aa14.93□□□□□ -0.02
UBE2D3-222ENST00000508238 WIZO95785 1651 aa14.93□□□□□ -0.02
UBE2D3-222ENST00000508238 LAMC3Q9Y6N6 1575 aa14.92□□□□□ -0.02
UBE2D3-222ENST00000508238 RSF1Q96T23 1441 aaPredicted RBP14.92□□□□□ -0.02
UBE2D3-222ENST00000508238 HOXD11P31277 338 aaPredicted RBP14.9□□□□□ -0.02
UBE2D3-222ENST00000508238 CADPSQ9ULU8 1353 aa14.86□□□□□ -0.03
UBE2D3-222ENST00000508238 PDS5BQ9NTI5 1447 aa14.85□□□□□ -0.03
UBE2D3-222ENST00000508238 DNAJC5Q9H3Z4 198 aa14.8□□□□□ -0.04
UBE2D3-222ENST00000508238 TOP2AP11388 1531 aaKnown RBP14.78□□□□□ -0.04
UBE2D3-222ENST00000508238 THOC2Q8NI27 1593 aaKnown RBP14.77□□□□□ -0.04
UBE2D3-222ENST00000508238 KIF21AQ7Z4S6 1674 aa14.75□□□□□ -0.05
UBE2D3-222ENST00000508238 CFTRP13569 1480 aa14.73□□□□□ -0.05
UBE2D3-222ENST00000508238 MRC2Q9UBG0 1479 aa14.69□□□□□ -0.06
UBE2D3-222ENST00000508238 FANCD2Q9BXW9 1451 aa14.66□□□□□ -0.06
UBE2D3-222ENST00000508238 WDR62O43379 1518 aa14.65□□□□□ -0.06
UBE2D3-222ENST00000508238 CEP164Q9UPV0 1460 aa14.64□□□□□ -0.07
UBE2D3-222ENST00000508238 CSRNP3Q8WYN3 585 aa14.64□□□□□ -0.07
UBE2D3-222ENST00000508238 CCDC88BA6NC98 1476 aa14.63□□□□□ -0.07
UBE2D3-222ENST00000508238 CACNB1Q02641 598 aaPredicted RBP14.58□□□□□ -0.08
UBE2D3-222ENST00000508238 ZBTB22O15209 634 aa14.54□□□□□ -0.08
UBE2D3-222ENST00000508238 PRDM2Q13029 1718 aa14.53□□□□□ -0.08
UBE2D3-222ENST00000508238 URB2Q14146 1524 aaKnown RBP14.52□□□□□ -0.08
UBE2D3-222ENST00000508238 DCAF8L1A6NGE4 600 aa14.52□□□□□ -0.09
UBE2D3-222ENST00000508238 FOXD4L1Q9NU39 408 aa14.45□□□□□ -0.1
UBE2D3-222ENST00000508238 ABCC8Q09428 1581 aa14.43□□□□□ -0.1
UBE2D3-222ENST00000508238 SLC4A2P04920 1241 aa14.42□□□□□ -0.1
UBE2D3-222ENST00000508238 TOPBP1Q92547 1522 aa14.4□□□□□ -0.1
UBE2D3-222ENST00000508238 IFT140Q96RY7 1462 aa14.38□□□□□ -0.11
UBE2D3-222ENST00000508238 DNMBPQ6XZF7 1577 aa14.35□□□□□ -0.11
UBE2D3-222ENST00000508238 OSCARQ8IYS5 282 aa14.33□□□□□ -0.12
UBE2D3-222ENST00000508238 SUPT5HO00267 1087 aaKnown RBP14.32□□□□□ -0.12
UBE2D3-222ENST00000508238 ZNF608Q9ULD9 1512 aaPredicted RBP14.31□□□□□ -0.12
UBE2D3-222ENST00000508238 POLA1P09884 1462 aaPredicted RBP14.26□□□□□ -0.13
UBE2D3-222ENST00000508238 TARBP1Q13395 1621 aaKnown RBP14.26□□□□□ -0.13
UBE2D3-222ENST00000508238 RNF39Q9H2S5 420 aa14.25□□□□□ -0.13
UBE2D3-222ENST00000508238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.24□□□□□ -0.13
UBE2D3-222ENST00000508238 SOGA1O94964 1423 aa14.22□□□□□ -0.13
UBE2D3-222ENST00000508238 AQRO60306 1485 aaKnown RBP eCLIP14.21□□□□□ -0.134e-14■■■■□ 25.1
UBE2D3-222ENST00000508238 EIF4G3O43432 1585 aaKnown RBP14.21□□□□□ -0.14
UBE2D3-222ENST00000508238 CUX1P39880 1505 aa14.2□□□□□ -0.14
UBE2D3-222ENST00000508238 RAD54L2Q9Y4B4 1467 aa14.19□□□□□ -0.14
UBE2D3-222ENST00000508238 FGD5Q6ZNL6 1462 aa14.18□□□□□ -0.14
UBE2D3-222ENST00000508238 TDRD9Q8NDG6 1382 aaKnown RBP14.16□□□□□ -0.14
UBE2D3-222ENST00000508238 WDR97A6NE52 1622 aa14.15□□□□□ -0.14
UBE2D3-222ENST00000508238 MYCNP04198 464 aaPredicted RBP14.13□□□□□ -0.15
UBE2D3-222ENST00000508238 TRIM41Q8WV44 630 aa14.11□□□□□ -0.15
UBE2D3-222ENST00000508238 GRIN2BQ13224 1484 aa14.07□□□□□ -0.16
UBE2D3-222ENST00000508238 CHD1O14646 1710 aa14.07□□□□□ -0.16
UBE2D3-222ENST00000508238 MAGI1Q96QZ7 1491 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms