RNA–Protein interactions for RNA: ENST00000498614.5

COL6A1-206, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL6A1, Length 2,358 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-206ENST00000498614 CFAP44Q96MT7 982 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 TMEM94Q12767 1356 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 ZBTB7BO15156 539 aaPredicted RBP20.46■□□□□ 0.87
COL6A1-206ENST00000498614 RBM25P49756 843 aaKnown RBP20.46■□□□□ 0.87
COL6A1-206ENST00000498614 NUCB1Q02818 461 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 AEBP1Q8IUX7 1158 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 ACEP12821 1306 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 TTC21BQ7Z4L5 1316 aa20.46■□□□□ 0.87
COL6A1-206ENST00000498614 NALCNQ8IZF0 1738 aa20.45■□□□□ 0.86
COL6A1-206ENST00000498614 CLCN1P35523 988 aa20.44■□□□□ 0.86
COL6A1-206ENST00000498614 EIF4A2Q14240 407 aaKnown RBP20.44■□□□□ 0.86
COL6A1-206ENST00000498614 ARHGAP45Q92619 1136 aa20.44■□□□□ 0.86
COL6A1-206ENST00000498614 RGPD8O14715 1765 aaPredicted RBP20.44■□□□□ 0.86
COL6A1-206ENST00000498614 SNX21Q969T3 373 aa20.44■□□□□ 0.86
COL6A1-206ENST00000498614 GRPEL1Q9HAV7 217 aa20.44■□□□□ 0.86
COL6A1-206ENST00000498614 SULT6B1Q6IMI4 303 aa20.43■□□□□ 0.86
COL6A1-206ENST00000498614 NWD1Q149M9 1564 aa20.43■□□□□ 0.86
COL6A1-206ENST00000498614 NRKQ7Z2Y5 1582 aa20.43■□□□□ 0.86
COL6A1-206ENST00000498614 CHD1LQ86WJ1 897 aa20.43■□□□□ 0.86
COL6A1-206ENST00000498614 TNPO1Q92973 898 aaKnown RBP20.42■□□□□ 0.86
COL6A1-206ENST00000498614 SOX12O15370 315 aa20.42■□□□□ 0.86
COL6A1-206ENST00000498614 ADGRL3Q9HAR2 1447 aa20.41■□□□□ 0.86
COL6A1-206ENST00000498614 TOPAZ1Q8N9V7 1692 aa20.41■□□□□ 0.86
COL6A1-206ENST00000498614 NAP1L5Q96NT1 182 aaPredicted RBP20.41■□□□□ 0.86
COL6A1-206ENST00000498614 ABCC4O15439 1325 aa20.41■□□□□ 0.86
COL6A1-206ENST00000498614 ESCO1Q5FWF5 840 aa20.4■□□□□ 0.86
COL6A1-206ENST00000498614 C19orf44Q9H6X5 657 aa20.4■□□□□ 0.86
COL6A1-206ENST00000498614 OVOS2A0A0J9YW53 1432 aa20.4■□□□□ 0.86
COL6A1-206ENST00000498614 OVOS2Q6IE36 1432 aa20.4■□□□□ 0.86
COL6A1-206ENST00000498614 ANKRD45Q5TZF3 282 aa20.39■□□□□ 0.86
COL6A1-206ENST00000498614 ORAI2Q96SN7 254 aa20.39■□□□□ 0.86
COL6A1-206ENST00000498614 USP6P35125 1406 aa20.39■□□□□ 0.85
COL6A1-206ENST00000498614 HSP90AB1P08238 724 aaKnown RBP20.39■□□□□ 0.85
COL6A1-206ENST00000498614 HSP90AB2PQ58FF8 381 aa20.39■□□□□ 0.85
COL6A1-206ENST00000498614 NGDNQ8NEJ9 315 aaKnown RBP20.39■□□□□ 0.85
COL6A1-206ENST00000498614 PLEKHG3A1L390 1219 aa20.38■□□□□ 0.85
COL6A1-206ENST00000498614 KIF2CQ99661 725 aa20.38■□□□□ 0.85
COL6A1-206ENST00000498614 CHMP4BQ9H444 224 aaKnown RBP20.38■□□□□ 0.85
COL6A1-206ENST00000498614 PEAK1Q9H792 1746 aa20.38■□□□□ 0.85
COL6A1-206ENST00000498614 KRT24Q2M2I5 525 aa20.37■□□□□ 0.85
COL6A1-206ENST00000498614 SIRT2Q8IXJ6 389 aa20.37■□□□□ 0.85
COL6A1-206ENST00000498614 BMP2KLQ5H9B9 411 aa20.37■□□□□ 0.85
COL6A1-206ENST00000498614 MCM10Q7L590 875 aa20.37■□□□□ 0.85
COL6A1-206ENST00000498614 CIZ1Q9ULV3 898 aaPredicted RBP20.37■□□□□ 0.85
COL6A1-206ENST00000498614 CD2BP2O95400 341 aaKnown RBP20.36■□□□□ 0.85
COL6A1-206ENST00000498614 RAB3GAP1Q15042 981 aa20.36■□□□□ 0.85
COL6A1-206ENST00000498614 GAS2L3Q86XJ1 694 aa20.36■□□□□ 0.85
COL6A1-206ENST00000498614 GCC1Q96CN9 775 aa20.36■□□□□ 0.85
COL6A1-206ENST00000498614 API5Q9BZZ5 524 aaKnown RBP20.36■□□□□ 0.85
COL6A1-206ENST00000498614 ATF3P18847 181 aa20.36■□□□□ 0.85
COL6A1-206ENST00000498614 ISY1Q9ULR0 285 aaKnown RBP20.36■□□□□ 0.85
COL6A1-206ENST00000498614 ERBB4Q15303 1308 aa20.35■□□□□ 0.85
COL6A1-206ENST00000498614 FOXD4L1Q9NU39 408 aa20.35■□□□□ 0.85
COL6A1-206ENST00000498614 GBP4Q96PP9 640 aa20.35■□□□□ 0.85
COL6A1-206ENST00000498614 XPCQ01831 940 aaPredicted RBP20.34■□□□□ 0.85
COL6A1-206ENST00000498614 FMN2Q9NZ56 1722 aa20.34■□□□□ 0.85
COL6A1-206ENST00000498614 PHF8Q9UPP1 1060 aa20.33■□□□□ 0.85
COL6A1-206ENST00000498614 ESPNB1AK53 854 aa20.32■□□□□ 0.84
COL6A1-206ENST00000498614 FOXO3O43524 673 aa20.32■□□□□ 0.84
COL6A1-206ENST00000498614 DDX17Q92841 729 aaKnown RBP20.32■□□□□ 0.84
COL6A1-206ENST00000498614 USP31Q70CQ4 1352 aa20.32■□□□□ 0.84
COL6A1-206ENST00000498614 TBC1D9Q6ZT07 1266 aa20.31■□□□□ 0.84
COL6A1-206ENST00000498614 RBM42Q9BTD8 480 aaKnown RBP20.31■□□□□ 0.84
COL6A1-206ENST00000498614 RGPD1P0DJD0 1748 aa20.31■□□□□ 0.84
COL6A1-206ENST00000498614 CHL1O00533 1208 aa20.31■□□□□ 0.84
COL6A1-206ENST00000498614 SSH2Q76I76 1423 aa20.3■□□□□ 0.84
COL6A1-206ENST00000498614 PLEKHG5O94827 1062 aa20.3■□□□□ 0.84
COL6A1-206ENST00000498614 HSP90AA1P07900 732 aaKnown RBP20.3■□□□□ 0.84
COL6A1-206ENST00000498614 NUTM2GQ5VZR2 741 aa20.3■□□□□ 0.84
COL6A1-206ENST00000498614 MAP3K19Q56UN5 1328 aa20.3■□□□□ 0.84
COL6A1-206ENST00000498614 MSH6P52701 1360 aa20.3■□□□□ 0.84
COL6A1-206ENST00000498614 XIRP1Q702N8 1843 aaKnown RBP20.29■□□□□ 0.84
COL6A1-206ENST00000498614 ANKARQ7Z5J8 1434 aa20.29■□□□□ 0.84
COL6A1-206ENST00000498614 K7ELQ4 463 aaPredicted RBP20.29■□□□□ 0.84
COL6A1-206ENST00000498614 SKOR2Q2VWA4 1001 aaPredicted RBP20.29■□□□□ 0.84
COL6A1-206ENST00000498614 GAS2L2Q8NHY3 880 aa20.28■□□□□ 0.84
COL6A1-206ENST00000498614 MIS18AQ9NYP9 233 aa20.28■□□□□ 0.84
COL6A1-206ENST00000498614 SSFA2P28290 1259 aa20.27■□□□□ 0.84
COL6A1-206ENST00000498614 CADPS2Q86UW7 1296 aa20.27■□□□□ 0.84
COL6A1-206ENST00000498614 RGS12O14924 1447 aa20.27■□□□□ 0.84
COL6A1-206ENST00000498614 PSME1Q06323 249 aa20.27■□□□□ 0.83
COL6A1-206ENST00000498614 INTS3Q68E01 1043 aaKnown RBP20.27■□□□□ 0.83
COL6A1-206ENST00000498614 TTC21AQ8NDW8 1320 aa20.27■□□□□ 0.83
COL6A1-206ENST00000498614 C1orf167Q5SNV9 1468 aa20.27■□□□□ 0.83
COL6A1-206ENST00000498614 KIF24Q5T7B8 1368 aa20.26■□□□□ 0.83
COL6A1-206ENST00000498614 TRIM44Q96DX7 344 aaPredicted RBP20.26■□□□□ 0.83
COL6A1-206ENST00000498614 CRB1P82279 1406 aa20.26■□□□□ 0.83
COL6A1-206ENST00000498614 ARHGEF10O15013 1369 aa20.25■□□□□ 0.83
COL6A1-206ENST00000498614 KIAA0232Q92628 1395 aa20.25■□□□□ 0.83
COL6A1-206ENST00000498614 MTHFSDQ2M296 383 aaKnown RBP20.25■□□□□ 0.83
COL6A1-206ENST00000498614 MST1RQ04912 1400 aa20.25■□□□□ 0.83
COL6A1-206ENST00000498614 PTMSP20962 102 aa20.24■□□□□ 0.83
COL6A1-206ENST00000498614 HAP1P54257 671 aaPredicted RBP20.24■□□□□ 0.83
COL6A1-206ENST00000498614 FLT4P35916 1363 aa20.24■□□□□ 0.83
COL6A1-206ENST00000498614 AMPHP49418 695 aa20.23■□□□□ 0.83
COL6A1-206ENST00000498614 SBNO1A3KN83 1393 aa20.23■□□□□ 0.83
COL6A1-206ENST00000498614 RTF1Q92541 710 aaKnown RBP20.22■□□□□ 0.83
COL6A1-206ENST00000498614 DCTPP1Q9H773 170 aa20.22■□□□□ 0.83
COL6A1-206ENST00000498614 SLC4A2P04920 1241 aa20.22■□□□□ 0.83
COL6A1-206ENST00000498614 LMOD2Q6P5Q4 547 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms