RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 KCNC4Q03721 635 aa8.66□□□□□ -1.02
HMGB1-207ENST00000468384 PLEKHH2Q8IVE3 1493 aa8.65□□□□□ -1.02
HMGB1-207ENST00000468384 ADAMTS13Q76LX8 1427 aa8.65□□□□□ -1.02
HMGB1-207ENST00000468384 FXR1P51114 621 aaKnown RBP eCLIP8.65□□□□□ -1.02
HMGB1-207ENST00000468384 HAP1P54257 671 aaPredicted RBP8.65□□□□□ -1.02
HMGB1-207ENST00000468384 PTPN23Q9H3S7 1636 aa8.65□□□□□ -1.03
HMGB1-207ENST00000468384 FYCO1Q9BQS8 1478 aa8.64□□□□□ -1.03
HMGB1-207ENST00000468384 CDC42BPAQ5VT25 1732 aa8.64□□□□□ -1.03
HMGB1-207ENST00000468384 HSPA8P11142 646 aaKnown RBP8.64□□□□□ -1.03
HMGB1-207ENST00000468384 SMC1BQ8NDV3 1235 aa8.64□□□□□ -1.03
HMGB1-207ENST00000468384 PRXQ9BXM0 1461 aa8.64□□□□□ -1.03
HMGB1-207ENST00000468384 RGPD3A6NKT7 1758 aaPredicted RBP8.63□□□□□ -1.03
HMGB1-207ENST00000468384 RGPD4Q7Z3J3 1758 aa8.63□□□□□ -1.03
HMGB1-207ENST00000468384 PDE3BQ13370 1112 aa8.63□□□□□ -1.03
HMGB1-207ENST00000468384 BTG4Q9NY30 223 aa8.63□□□□□ -1.03
HMGB1-207ENST00000468384 EHBP1L1Q8N3D4 1523 aa8.63□□□□□ -1.03
HMGB1-207ENST00000468384 ZFYVE9O95405 1425 aa8.63□□□□□ -1.03
HMGB1-207ENST00000468384 MKRN1Q9UHC7 482 aaKnown RBP8.62□□□□□ -1.03
HMGB1-207ENST00000468384 MTUS2Q5JR59 1369 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 C2orf72A6NCS6 295 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 FOXO3O43524 673 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 CABLES1Q8TDN4 633 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 WBP1LQ9NX94 342 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 ARHGAP31Q2M1Z3 1444 aa8.61□□□□□ -1.03
HMGB1-207ENST00000468384 NRAPQ86VF7 1730 aa8.6□□□□□ -1.03
HMGB1-207ENST00000468384 WFS1O76024 890 aa8.6□□□□□ -1.03
HMGB1-207ENST00000468384 HDGFP51858 240 aaKnown RBP8.6□□□□□ -1.03
HMGB1-207ENST00000468384 MRPL50Q8N5N7 158 aaKnown RBP8.6□□□□□ -1.03
HMGB1-207ENST00000468384 PMFBP1Q8TBY8 1022 aa8.6□□□□□ -1.03
HMGB1-207ENST00000468384 SPATA31A3Q5VYP0 1347 aa8.59□□□□□ -1.03
HMGB1-207ENST00000468384 INSM1Q01101 510 aaPredicted RBP8.59□□□□□ -1.03
HMGB1-207ENST00000468384 PPP4R3BQ5MIZ7 849 aa8.59□□□□□ -1.03
HMGB1-207ENST00000468384 KRTAP4-8Q9BYQ9 185 aa8.59□□□□□ -1.03
HMGB1-207ENST00000468384 SZT2Q5T011 3432 aa8.59□□□□□ -1.03
HMGB1-207ENST00000468384 RIMS2Q9UQ26 1411 aa8.58□□□□□ -1.04
HMGB1-207ENST00000468384 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-207ENST00000468384 GSE1Q14687 1217 aa8.57□□□□□ -1.04
HMGB1-207ENST00000468384 TXNRD1Q16881 649 aa8.57□□□□□ -1.04
HMGB1-207ENST00000468384 CFDP1Q9UEE9 299 aaPredicted RBP8.57□□□□□ -1.04
HMGB1-207ENST00000468384 FBXO3Q9UK99 471 aa8.57□□□□□ -1.04
HMGB1-207ENST00000468384 SPATA31A1Q5TZJ5 1347 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 C10orf71Q711Q0 1435 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 WIPF1O43516 503 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 ESCO1Q5FWF5 840 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 PTF1AQ7RTS3 328 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 SLC16A10Q8TF71 515 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 SNX27Q96L92 541 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 MCOLN1Q9GZU1 580 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 NALCNQ8IZF0 1738 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 ABCA3Q99758 1704 aa8.56□□□□□ -1.04
HMGB1-207ENST00000468384 SOX10P56693 466 aa8.55□□□□□ -1.04
HMGB1-207ENST00000468384 MBD5Q9P267 1494 aa8.55□□□□□ -1.04
HMGB1-207ENST00000468384 RRBP1Q9P2E9 1410 aaKnown RBP8.54□□□□□ -1.04
HMGB1-207ENST00000468384 CEP152O94986 1710 aa8.54□□□□□ -1.04
HMGB1-207ENST00000468384 XRN1Q8IZH2 1706 aaKnown RBP8.54□□□□□ -1.04
HMGB1-207ENST00000468384 COL6A3P12111 3177 aa8.54□□□□□ -1.04
HMGB1-207ENST00000468384 PXDNLA1KZ92 1463 aa8.54□□□□□ -1.04
HMGB1-207ENST00000468384 LRPPRCP42704 1394 aaKnown RBP8.54□□□□□ -1.04
HMGB1-207ENST00000468384 C11orf95C9JLR9 678 aaPredicted RBP8.54□□□□□ -1.04
HMGB1-207ENST00000468384 BCAMP50895 628 aa8.54□□□□□ -1.04
HMGB1-207ENST00000468384 PLCB2Q00722 1185 aa8.53□□□□□ -1.04
HMGB1-207ENST00000468384 LCE2CQ5TA81 110 aa8.53□□□□□ -1.04
HMGB1-207ENST00000468384 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.53□□□□□ -1.04
HMGB1-207ENST00000468384 RRAGCQ9HB90 399 aa8.53□□□□□ -1.04
HMGB1-207ENST00000468384 CICQ96RK0 1608 aaPredicted RBP8.53□□□□□ -1.04
HMGB1-207ENST00000468384 MEGF6O75095 1541 aa8.53□□□□□ -1.04
HMGB1-207ENST00000468384 CNTNAP1P78357 1384 aa8.52□□□□□ -1.05
HMGB1-207ENST00000468384 PKD1L2Q7Z442 2459 aa8.52□□□□□ -1.05
HMGB1-207ENST00000468384 NBPF15Q8N660 670 aa8.52□□□□□ -1.05
HMGB1-207ENST00000468384 ZNF644Q9H582 1327 aaPredicted RBP8.52□□□□□ -1.05
HMGB1-207ENST00000468384 ADAMTS7Q9UKP4 1686 aa8.51□□□□□ -1.05
HMGB1-207ENST00000468384 SLC4A5Q9BY07 1137 aa8.51□□□□□ -1.05
HMGB1-207ENST00000468384 PHF8Q9UPP1 1060 aa8.51□□□□□ -1.05
HMGB1-207ENST00000468384 V9GY48 417 aaPredicted RBP8.51□□□□□ -1.05
HMGB1-207ENST00000468384 COL24A1Q17RW2 1714 aa8.51□□□□□ -1.05
HMGB1-207ENST00000468384 VEGFBP49765 207 aa8.5□□□□□ -1.05
HMGB1-207ENST00000468384 VASPP50552 380 aaPredicted RBP8.5□□□□□ -1.05
HMGB1-207ENST00000468384 BARGINQ6ZT62 677 aa8.5□□□□□ -1.05
HMGB1-207ENST00000468384 CD2APQ9Y5K6 639 aa8.5□□□□□ -1.05
HMGB1-207ENST00000468384 KDM2BQ8NHM5 1336 aa8.5□□□□□ -1.05
HMGB1-207ENST00000468384 TECPR2O15040 1411 aa8.49□□□□□ -1.05
HMGB1-207ENST00000468384 NFX1Q12986 1120 aaKnown RBP8.49□□□□□ -1.05
HMGB1-207ENST00000468384 KRTAP9-2Q9BYQ4 174 aa8.49□□□□□ -1.05
HMGB1-207ENST00000468384 SLC52A1Q9NWF4 448 aa8.49□□□□□ -1.05
HMGB1-207ENST00000468384 KIF15Q9NS87 1388 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 KRTAP9-6A0A140TA67 174 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 ZNF827Q17R98 1081 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 COL25A1Q9BXS0 654 aaPredicted RBP8.48□□□□□ -1.05
HMGB1-207ENST00000468384 PRDM6Q9NQX0 595 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 TOPAZ1Q8N9V7 1692 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 DUOX2Q9NRD8 1548 aa8.48□□□□□ -1.05
HMGB1-207ENST00000468384 OVOS2A0A0G2JMS6 1433 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 OVOS2A0A0J9YW53 1432 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 OVOS2Q6IE36 1432 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 PLA2G5P39877 138 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 XP32Q5T750 250 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 USP35Q9P2H5 1018 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 KCPQ6ZWJ8 1503 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 LMTK2Q8IWU2 1503 aa8.47□□□□□ -1.05
HMGB1-207ENST00000468384 COL9A1P20849 921 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms