RNA–Protein interactions for RNA: ENST00000430669.6

PTCH1-208, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 8,232 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-208ENST00000430669 PRDM11Q9NQV5 511 aa13.92□□□□□ -0.18
PTCH1-208ENST00000430669 ERCC6L2Q5T890 1561 aa13.92□□□□□ -0.18
PTCH1-208ENST00000430669 ANO8Q9HCE9 1232 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-208ENST00000430669 ACEP12821 1306 aa13.92□□□□□ -0.18
PTCH1-208ENST00000430669 SOS1Q07889 1333 aaPredicted RBP13.92□□□□□ -0.18
PTCH1-208ENST00000430669 CADPS2Q86UW7 1296 aa13.92□□□□□ -0.18
PTCH1-208ENST00000430669 PTPRTO14522 1441 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 TBC1D2BQ9UPU7 963 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 HYPKQ9NX55 129 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.91□□□□□ -0.18
PTCH1-208ENST00000430669 FOXD4L1Q9NU39 408 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 PPLO60437 1756 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 TOMM22Q9NS69 142 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 A0A1W2PP64 1363 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 RALYLQ86SE5 291 aaKnown RBP13.91□□□□□ -0.18
PTCH1-208ENST00000430669 TMEM57Q8N5G2 664 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 CPLX1O14810 134 aa13.91□□□□□ -0.18
PTCH1-208ENST00000430669 APPP05067 770 aa13.9□□□□□ -0.18
PTCH1-208ENST00000430669 LETM1O95202 739 aaPredicted RBP13.9□□□□□ -0.18
PTCH1-208ENST00000430669 IQGAP1P46940 1657 aa13.9□□□□□ -0.18
PTCH1-208ENST00000430669 GOLGA6L19H0YKK7 550 aa13.9□□□□□ -0.18
PTCH1-208ENST00000430669 NCBP3Q53F19 620 aaKnown RBP13.9□□□□□ -0.18
PTCH1-208ENST00000430669 ARHGAP45Q92619 1136 aa13.9□□□□□ -0.18
PTCH1-208ENST00000430669 SSH1Q8WYL5 1049 aa13.9□□□□□ -0.18
PTCH1-208ENST00000430669 DHX16O60231 1041 aaKnown RBP13.89□□□□□ -0.19
PTCH1-208ENST00000430669 STARD3NLO95772 234 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 ATP7BP35670 1465 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 FLT4P35916 1363 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 PLEKHH1Q9ULM0 1364 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 ZSCAN25Q6NSZ9 544 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 KIDINS220Q9ULH0 1771 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 ABCA6Q8N139 1617 aa13.89□□□□□ -0.19
PTCH1-208ENST00000430669 CCDC158Q5M9N0 1113 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 FSD1Q9BTV5 496 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 GNL3LQ9NVN8 582 aaKnown RBP13.88□□□□□ -0.19
PTCH1-208ENST00000430669 RBM33Q96EV2 1170 aaKnown RBP13.88□□□□□ -0.19
PTCH1-208ENST00000430669 STRN4Q9NRL3 753 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 PIK3R4Q99570 1358 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 FYB1O15117 783 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 LARP1Q6PKG0 1096 aaKnown RBP13.88□□□□□ -0.19
PTCH1-208ENST00000430669 TRIM34Q9BYJ4 488 aa13.88□□□□□ -0.19
PTCH1-208ENST00000430669 SART3Q15020 963 aaKnown RBP13.87□□□□□ -0.19
PTCH1-208ENST00000430669 NEUROD6Q96NK8 337 aa13.87□□□□□ -0.19
PTCH1-208ENST00000430669 C1orf115Q9H7X2 142 aa13.87□□□□□ -0.19
PTCH1-208ENST00000430669 RASSF8Q8NHQ8 419 aa13.87□□□□□ -0.19
PTCH1-208ENST00000430669 PPRC1Q5VV67 1664 aaKnown RBP13.87□□□□□ -0.19
PTCH1-208ENST00000430669 SLC3A2P08195 630 aaKnown RBP13.87□□□□□ -0.19
PTCH1-208ENST00000430669 XBP1P17861 261 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 SAFBQ15424 915 aaKnown RBP eCLIP13.86□□□□□ -0.19
PTCH1-208ENST00000430669 CACNA1FO60840 1977 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 KIF1BPQ96EK5 621 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 TPM3P06753 285 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 CCDC57Q2TAC2 916 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 PREX1Q8TCU6 1659 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 MCTP1Q6DN14 999 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
PTCH1-208ENST00000430669 NLRP1Q9C000 1473 aa13.86□□□□□ -0.19
PTCH1-208ENST00000430669 MBD3O95983 291 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 BRMS1Q9HCU9 246 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 EMILIN1Q9Y6C2 1016 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 SRGAP3O43295 1099 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 MCM10Q7L590 875 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 NFXL1Q6ZNB6 911 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 AEBP1Q8IUX7 1158 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 PLA2R1Q13018 1463 aa13.85□□□□□ -0.19
PTCH1-208ENST00000430669 TPM2P07951 284 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 DBF4Q9UBU7 674 aaPredicted RBP13.84□□□□□ -0.19
PTCH1-208ENST00000430669 DEPDC5O75140 1603 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 TTC39AQ5SRH9 613 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 ERVK-7P63135 1459 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 KRT32Q14532 448 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 ZNF652Q9Y2D9 606 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 TRIM27P14373 513 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 UGGT1Q9NYU2 1555 aa13.84□□□□□ -0.19
PTCH1-208ENST00000430669 NPHP3Q7Z494 1330 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 K7ELQ4 463 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-208ENST00000430669 HDAC1Q13547 482 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-208ENST00000430669 HSP90AB3PQ58FF7 597 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 MYL6BP14649 208 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 NAT10Q9H0A0 1025 aaKnown RBP13.83□□□□□ -0.2
PTCH1-208ENST00000430669 ADGRB3O60242 1522 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 WASHC4Q2M389 1173 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 TEX13AQ9BXU3 409 aaPredicted RBP13.83□□□□□ -0.2
PTCH1-208ENST00000430669 CNNM1Q9NRU3 951 aa13.83□□□□□ -0.2
PTCH1-208ENST00000430669 PER1O15534 1290 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-208ENST00000430669 SLC4A3P48751 1232 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 TPM1P09493 284 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 KRT28Q7Z3Y7 464 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 CEBPAP49715 358 aaPredicted RBP13.82□□□□□ -0.2
PTCH1-208ENST00000430669 AKAP2Q9Y2D5 859 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 CDC42BPGQ6DT37 1551 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 LMTK2Q8IWU2 1503 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 BECN2A8MW95 431 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 CYP46A1Q9Y6A2 500 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 TMOD3Q9NYL9 352 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 TBX22Q9Y458 520 aa13.82□□□□□ -0.2
PTCH1-208ENST00000430669 NFKBIBQ15653 356 aa13.81□□□□□ -0.2
PTCH1-208ENST00000430669 GLRX3O76003 335 aaKnown RBP13.81□□□□□ -0.2
PTCH1-208ENST00000430669 TULP1O00294 542 aaPredicted RBP13.81□□□□□ -0.2
PTCH1-208ENST00000430669 SIRT1Q96EB6 747 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms