RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 EMILIN1Q9Y6C2 1016 aa26.02■■□□□ 1.76
UPF3A-202ENST00000375299 PKP1Q13835 747 aa26.01■■□□□ 1.75
UPF3A-202ENST00000375299 ANKRD44Q8N8A2 993 aa26.01■■□□□ 1.75
UPF3A-202ENST00000375299 SETD1AO15047 1707 aaKnown RBP26■■□□□ 1.75
UPF3A-202ENST00000375299 ST18O60284 1047 aa26■■□□□ 1.75
UPF3A-202ENST00000375299 SPATA31D1Q6ZQQ2 1576 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 DIP2BQ9P265 1576 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 CASC1Q6TDU7 716 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 RBSNQ9H1K0 784 aa25.99■■□□□ 1.75
UPF3A-202ENST00000375299 PDLIM2Q96JY6 352 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3CA6NJZ7 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3BA6NNM3 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 RIMBP3Q9UFD9 1639 aa25.98■■□□□ 1.75
UPF3A-202ENST00000375299 SDSP20132 328 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 TERF1P54274 439 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 RPAP2Q8IXW5 612 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 OTUD7AQ8TE49 926 aaPredicted RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 CPSF1Q10570 1443 aaKnown RBP25.97■■□□□ 1.75
UPF3A-202ENST00000375299 PKNOX2Q96KN3 472 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 PDCL3Q9H2J4 239 aa25.97■■□□□ 1.75
UPF3A-202ENST00000375299 ZGPATQ8N5A5 531 aaKnown RBP25.96■■□□□ 1.75
UPF3A-202ENST00000375299 TSPOAP1O95153 1857 aa25.96■■□□□ 1.75
UPF3A-202ENST00000375299 RGS12O14924 1447 aa25.95■■□□□ 1.75
UPF3A-202ENST00000375299 FAM83GA6ND36 823 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 CEP85Q6P2H3 762 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 ZMYND15Q9H091 742 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 PRPF40AO75400 957 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 PRIM1P49642 420 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 GPT2Q8TD30 523 aa25.95■■□□□ 1.74
UPF3A-202ENST00000375299 NOL7Q9UMY1 257 aaKnown RBP25.95■■□□□ 1.74
UPF3A-202ENST00000375299 EDC4Q6P2E9 1401 aaKnown RBP25.94■■□□□ 1.74
UPF3A-202ENST00000375299 AATKQ6ZMQ8 1374 aa25.94■■□□□ 1.74
UPF3A-202ENST00000375299 ZDHHC9Q9Y397 364 aa25.93■■□□□ 1.74
UPF3A-202ENST00000375299 REC8O95072 547 aa25.93■■□□□ 1.74
UPF3A-202ENST00000375299 ZNF500O60304 480 aaPredicted RBP25.92■■□□□ 1.74
UPF3A-202ENST00000375299 RBM27Q9P2N5 1060 aaKnown RBP25.92■■□□□ 1.74
UPF3A-202ENST00000375299 DCTN1Q14203 1278 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 RTL1A6NKG5 1358 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 SMARCA5O60264 1052 aaPredicted RBP25.91■■□□□ 1.74
UPF3A-202ENST00000375299 MSH6P52701 1360 aa25.91■■□□□ 1.74
UPF3A-202ENST00000375299 NME9Q86XW9 330 aa25.9■■□□□ 1.74
UPF3A-202ENST00000375299 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.9■■□□□ 1.74
UPF3A-202ENST00000375299 NRXN3Q9Y4C0 1643 aa25.9■■□□□ 1.74
UPF3A-202ENST00000375299 HAP1P54257 671 aaPredicted RBP25.89■■□□□ 1.74
UPF3A-202ENST00000375299 LRSAM1Q6UWE0 723 aa25.89■■□□□ 1.74
UPF3A-202ENST00000375299 WASLO00401 505 aaPredicted RBP25.89■■□□□ 1.73
UPF3A-202ENST00000375299 ERC2O15083 957 aa25.89■■□□□ 1.73
UPF3A-202ENST00000375299 MLECQ14165 292 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 TMEM63CQ9P1W3 806 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 ZRANB1Q9UGI0 708 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 APBB1O00213 710 aa25.87■■□□□ 1.73
UPF3A-202ENST00000375299 METP08581 1390 aa25.86■■□□□ 1.73
UPF3A-202ENST00000375299 R3HCC1Q9Y3T6 440 aaKnown RBP25.86■■□□□ 1.73
UPF3A-202ENST00000375299 ZKSCAN5Q9Y2L8 839 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 PTPRCP08575 1304 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 MON2Q7Z3U7 1717 aa25.85■■□□□ 1.73
UPF3A-202ENST00000375299 MEIS3Q99687 375 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 SYCE3A1L190 88 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 NRKQ7Z2Y5 1582 aa25.84■■□□□ 1.73
UPF3A-202ENST00000375299 MBD3O95983 291 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 RRS1Q15050 365 aaKnown RBP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 KRT24Q2M2I5 525 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 COG3Q96JB2 828 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 MCM5P33992 734 aa25.83■■□□□ 1.73
UPF3A-202ENST00000375299 ABCF1Q8NE71 845 aaKnown RBP eCLIP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 NSFL1CQ9UNZ2 370 aaKnown RBP25.83■■□□□ 1.73
UPF3A-202ENST00000375299 KIAA0232Q92628 1395 aa25.83■■□□□ 1.72
UPF3A-202ENST00000375299 XPCQ01831 940 aaPredicted RBP25.82■■□□□ 1.72
UPF3A-202ENST00000375299 TXNDC2Q86VQ3 553 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 OSBPL3Q9H4L5 887 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CPS1P31327 1500 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CHAMP1Q96JM3 812 aa25.82■■□□□ 1.72
UPF3A-202ENST00000375299 CHL1O00533 1208 aa25.81■■□□□ 1.72
UPF3A-202ENST00000375299 NUDT16Q96DE0 195 aaKnown RBP25.81■■□□□ 1.72
UPF3A-202ENST00000375299 CCDC39Q9UFE4 941 aa25.81■■□□□ 1.72
UPF3A-202ENST00000375299 HMMRO75330 724 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 TMX3Q96JJ7 454 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 CSPP1Q1MSJ5 1256 aa25.8■■□□□ 1.72
UPF3A-202ENST00000375299 MCM2P49736 904 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 TUBGCP6Q96RT7 1819 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 C3P01024 1663 aa25.79■■□□□ 1.72
UPF3A-202ENST00000375299 NEK4P51957 841 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 PDE1AP54750 535 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 NCKAP5LQ9HCH0 1330 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 BRD1O95696 1058 aa25.78■■□□□ 1.72
UPF3A-202ENST00000375299 RBM10P98175 930 aaKnown RBP25.78■■□□□ 1.72
UPF3A-202ENST00000375299 AKAP12Q02952 1782 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 FOXD4L5Q5VV16 416 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-202ENST00000375299 FOXD4L4Q8WXT5 416 aaPredicted RBP25.77■■□□□ 1.72
UPF3A-202ENST00000375299 CCDC61Q9Y6R9 512 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 MAP7D2Q96T17 732 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 TECPR2O15040 1411 aa25.77■■□□□ 1.72
UPF3A-202ENST00000375299 SIRT1Q96EB6 747 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 UQCRHLA0A096LP55 91 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 UQCRHP07919 91 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 CUL4AQ13619 759 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 AEBP1Q8IUX7 1158 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 ITSN1Q15811 1721 aa25.76■■□□□ 1.71
UPF3A-202ENST00000375299 SULT6B1Q6IMI4 303 aa25.74■■□□□ 1.71
UPF3A-202ENST00000375299 MCM10Q7L590 875 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms