RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 GDPD2Q9HCC8 539 aa17.97■□□□□ 0.47
CCNF-201ENST00000293968 BRPF1P55201 1214 aaPredicted RBP17.97■□□□□ 0.47
CCNF-201ENST00000293968 RPAP2Q8IXW5 612 aaPredicted RBP17.97■□□□□ 0.47
CCNF-201ENST00000293968 ZNF445P59923 1031 aa17.96■□□□□ 0.47
CCNF-201ENST00000293968 YTHDC2Q9H6S0 1430 aaKnown RBP17.96■□□□□ 0.47
CCNF-201ENST00000293968 NEURL4Q96JN8 1562 aa17.96■□□□□ 0.46
CCNF-201ENST00000293968 LRRC7Q96NW7 1537 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 UQCRHLA0A096LP55 91 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 UQCRHP07919 91 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 MCCP23508 829 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 TXNDC2Q86VQ3 553 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 NSFL1CQ9UNZ2 370 aaKnown RBP17.95■□□□□ 0.46
CCNF-201ENST00000293968 UPF3BQ9BZI7 483 aaKnown RBP17.95■□□□□ 0.46
CCNF-201ENST00000293968 TMEM63CQ9P1W3 806 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 FAM135BQ49AJ0 1406 aa17.95■□□□□ 0.46
CCNF-201ENST00000293968 CFAP74Q9C0B2 1584 aa17.94■□□□□ 0.46
CCNF-201ENST00000293968 PDCL3Q9H2J4 239 aa17.94■□□□□ 0.46
CCNF-201ENST00000293968 PTCH1Q13635 1447 aa17.94■□□□□ 0.46
CCNF-201ENST00000293968 TMX3Q96JJ7 454 aa17.94■□□□□ 0.46
CCNF-201ENST00000293968 PNPLA6Q8IY17 1366 aa17.93■□□□□ 0.46
CCNF-201ENST00000293968 ZFYVE9O95405 1425 aa17.93■□□□□ 0.46
CCNF-201ENST00000293968 ZNF853P0CG23 659 aa17.93■□□□□ 0.46
CCNF-201ENST00000293968 HAP1P54257 671 aaPredicted RBP17.93■□□□□ 0.46
CCNF-201ENST00000293968 MSH6P52701 1360 aa17.93■□□□□ 0.46
CCNF-201ENST00000293968 AK9Q5TCS8 1911 aa17.93■□□□□ 0.46
CCNF-201ENST00000293968 IFT172Q9UG01 1749 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 USP32Q8NFA0 1604 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 CAMSAP1Q5T5Y3 1602 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 RTF1Q92541 710 aaKnown RBP17.92■□□□□ 0.46
CCNF-201ENST00000293968 MED14O60244 1454 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 ABCA9Q8IUA7 1624 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 KIDINS220Q9ULH0 1771 aa17.92■□□□□ 0.46
CCNF-201ENST00000293968 LRSAM1Q6UWE0 723 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 ZDHHC9Q9Y397 364 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 PPLO60437 1756 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 LMTK2Q8IWU2 1503 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 RIMS2Q9UQ26 1411 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 CCDC39Q9UFE4 941 aa17.91■□□□□ 0.46
CCNF-201ENST00000293968 NOL7Q9UMY1 257 aaKnown RBP17.91■□□□□ 0.46
CCNF-201ENST00000293968 POGZQ7Z3K3 1410 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 CLEC17AQ6ZS10 378 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 TSPYL4Q9UJ04 414 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 ABCC3O15438 1527 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 PDE1AP54750 535 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 TSPY26PQ9H489 355 aa17.9■□□□□ 0.46
CCNF-201ENST00000293968 MAP4K4O95819 1239 aaPredicted RBP17.89■□□□□ 0.45
CCNF-201ENST00000293968 NUDT16Q96DE0 195 aaKnown RBP17.89■□□□□ 0.45
CCNF-201ENST00000293968 MBD3O95983 291 aa17.89■□□□□ 0.45
CCNF-201ENST00000293968 LARP6Q9BRS8 491 aaKnown RBP17.89■□□□□ 0.45
CCNF-201ENST00000293968 PIK3R4Q99570 1358 aa17.89■□□□□ 0.45
CCNF-201ENST00000293968 ZC3H13Q5T200 1668 aaKnown RBP17.89■□□□□ 0.45
CCNF-201ENST00000293968 G2E3Q7L622 706 aa17.89■□□□□ 0.45
CCNF-201ENST00000293968 SYAP1Q96A49 352 aaPredicted RBP17.89■□□□□ 0.45
CCNF-201ENST00000293968 ZKSCAN5Q9Y2L8 839 aa17.89■□□□□ 0.45
CCNF-201ENST00000293968 FKBP5Q13451 457 aaPredicted RBP17.88■□□□□ 0.45
CCNF-201ENST00000293968 STK31Q9BXU1 1019 aa17.88■□□□□ 0.45
CCNF-201ENST00000293968 CYP2E1P05181 493 aaPredicted RBP17.88■□□□□ 0.45
CCNF-201ENST00000293968 CD163L1Q9NR16 1453 aa17.88■□□□□ 0.45
CCNF-201ENST00000293968 IBTKQ9P2D0 1353 aaPredicted RBP17.87■□□□□ 0.45
CCNF-201ENST00000293968 ZNF830Q96NB3 372 aaPredicted RBP17.87■□□□□ 0.45
CCNF-201ENST00000293968 DTNBO60941 627 aa17.87■□□□□ 0.45
CCNF-201ENST00000293968 PALD1Q9ULE6 856 aa17.87■□□□□ 0.45
CCNF-201ENST00000293968 WASLO00401 505 aaPredicted RBP17.86■□□□□ 0.45
CCNF-201ENST00000293968 CSPP1Q1MSJ5 1256 aa17.86■□□□□ 0.45
CCNF-201ENST00000293968 IL1RAPL2Q9NP60 686 aa17.86■□□□□ 0.45
CCNF-201ENST00000293968 ARHGEF28Q8N1W1 1705 aaKnown RBP17.86■□□□□ 0.45
CCNF-201ENST00000293968 RTL1A6NKG5 1358 aa17.86■□□□□ 0.45
CCNF-201ENST00000293968 FOXO3O43524 673 aa17.86■□□□□ 0.45
CCNF-201ENST00000293968 GNAI2P04899 355 aa17.86■□□□□ 0.45
CCNF-201ENST00000293968 NEXMIFQ5QGS0 1516 aa17.85■□□□□ 0.45
CCNF-201ENST00000293968 LRRCC1Q9C099 1032 aa17.85■□□□□ 0.45
CCNF-201ENST00000293968 EIF4A2Q14240 407 aaKnown RBP17.85■□□□□ 0.45
CCNF-201ENST00000293968 HSP90AB2PQ58FF8 381 aa17.84■□□□□ 0.45
CCNF-201ENST00000293968 MX1P20591 662 aa17.84■□□□□ 0.45
CCNF-201ENST00000293968 KIAA2012Q0VF49 1180 aa17.84■□□□□ 0.45
CCNF-201ENST00000293968 PTPRMP28827 1452 aa17.84■□□□□ 0.45
CCNF-201ENST00000293968 ESYT1Q9BSJ8 1104 aa17.84■□□□□ 0.45
CCNF-201ENST00000293968 HS1BP3Q53T59 392 aa17.83■□□□□ 0.45
CCNF-201ENST00000293968 GADD45BO75293 160 aaPredicted RBP17.83■□□□□ 0.45
CCNF-201ENST00000293968 CCDC61Q9Y6R9 512 aa17.83■□□□□ 0.44
CCNF-201ENST00000293968 USP25Q9UHP3 1055 aa17.83■□□□□ 0.44
CCNF-201ENST00000293968 NUTM1Q86Y26 1132 aa17.82■□□□□ 0.44
CCNF-201ENST00000293968 PTPRCP08575 1304 aa17.82■□□□□ 0.44
CCNF-201ENST00000293968 PHF14O94880 888 aa17.82■□□□□ 0.44
CCNF-201ENST00000293968 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.82■□□□□ 0.44
CCNF-201ENST00000293968 CHL1O00533 1208 aa17.81■□□□□ 0.44
CCNF-201ENST00000293968 MCM2P49736 904 aa17.81■□□□□ 0.44
CCNF-201ENST00000293968 CCT4P50991 539 aaKnown RBP17.81■□□□□ 0.44
CCNF-201ENST00000293968 PLPPR3Q6T4P5 718 aa17.81■□□□□ 0.44
CCNF-201ENST00000293968 PDLIM2Q96JY6 352 aa17.81■□□□□ 0.44
CCNF-201ENST00000293968 ZNF500O60304 480 aaPredicted RBP17.81■□□□□ 0.44
CCNF-201ENST00000293968 FIBPO43427 364 aa17.8■□□□□ 0.44
CCNF-201ENST00000293968 USP48Q86UV5 1035 aa17.8■□□□□ 0.44
CCNF-201ENST00000293968 ESF1Q9H501 851 aaKnown RBP17.8■□□□□ 0.44
CCNF-201ENST00000293968 MLH3Q9UHC1 1453 aa17.8■□□□□ 0.44
CCNF-201ENST00000293968 PRDM10Q9NQV6 1147 aa17.8■□□□□ 0.44
CCNF-201ENST00000293968 CHMP3Q9Y3E7 222 aa17.8■□□□□ 0.44
CCNF-201ENST00000293968 C17orf53Q8N3J3 647 aaPredicted RBP17.8■□□□□ 0.44
CCNF-201ENST00000293968 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP17.8■□□□□ 0.44
CCNF-201ENST00000293968 FRMPD1Q5SYB0 1578 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms