RNA–Protein interactions for RNA: ENST00000225742.13

SMARCD2-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 1 (best) BASIC

Gene SMARCD2, Length 1,800 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-201ENST00000225742 RGS12O14924 1447 aa27.47■■□□□ 1.99
SMARCD2-201ENST00000225742 SNX21Q969T3 373 aa27.46■■□□□ 1.99
SMARCD2-201ENST00000225742 NGDNQ8NEJ9 315 aaKnown RBP27.46■■□□□ 1.99
SMARCD2-201ENST00000225742 DCTPP1Q9H773 170 aa27.46■■□□□ 1.99
SMARCD2-201ENST00000225742 MCM10Q7L590 875 aa27.45■■□□□ 1.98
SMARCD2-201ENST00000225742 HSCBQ8IWL3 235 aa27.45■■□□□ 1.98
SMARCD2-201ENST00000225742 RPAP2Q8IXW5 612 aaPredicted RBP27.45■■□□□ 1.98
SMARCD2-201ENST00000225742 PIK3C2AO00443 1686 aa27.45■■□□□ 1.98
SMARCD2-201ENST00000225742 HTATSF1O43719 755 aaKnown RBP27.44■■□□□ 1.98
SMARCD2-201ENST00000225742 RGPD8O14715 1765 aaPredicted RBP27.44■■□□□ 1.98
SMARCD2-201ENST00000225742 ANKRD44Q8N8A2 993 aa27.44■■□□□ 1.98
SMARCD2-201ENST00000225742 IGSF1Q8N6C5 1336 aa27.43■■□□□ 1.98
SMARCD2-201ENST00000225742 GAS2L2Q8NHY3 880 aa27.43■■□□□ 1.98
SMARCD2-201ENST00000225742 CHMP5Q9NZZ3 219 aa27.43■■□□□ 1.98
SMARCD2-201ENST00000225742 RTF1Q92541 710 aaKnown RBP27.42■■□□□ 1.98
SMARCD2-201ENST00000225742 AMPHP49418 695 aa27.4■■□□□ 1.98
SMARCD2-201ENST00000225742 ATP10DQ9P241 1426 aa27.39■■□□□ 1.98
SMARCD2-201ENST00000225742 MTHFSDQ2M296 383 aaKnown RBP27.39■■□□□ 1.97
SMARCD2-201ENST00000225742 NCOA3Q9Y6Q9 1424 aa27.39■■□□□ 1.97
SMARCD2-201ENST00000225742 CDC45O75419 566 aa27.38■■□□□ 1.97
SMARCD2-201ENST00000225742 LRRC37A3O60309 1634 aa27.37■■□□□ 1.97
SMARCD2-201ENST00000225742 SOS1Q07889 1333 aaPredicted RBP27.37■■□□□ 1.97
SMARCD2-201ENST00000225742 KRT24Q2M2I5 525 aa27.36■■□□□ 1.97
SMARCD2-201ENST00000225742 TBC1D9Q6ZT07 1266 aa27.36■■□□□ 1.97
SMARCD2-201ENST00000225742 EYA1Q99502 592 aa27.35■■□□□ 1.97
SMARCD2-201ENST00000225742 RTL1A6NKG5 1358 aa27.35■■□□□ 1.97
SMARCD2-201ENST00000225742 CEP170BQ9Y4F5 1589 aaPredicted RBP27.34■■□□□ 1.97
SMARCD2-201ENST00000225742 PLEKHM2Q8IWE5 1019 aa27.34■■□□□ 1.97
SMARCD2-201ENST00000225742 TSPYL4Q9UJ04 414 aa27.34■■□□□ 1.97
SMARCD2-201ENST00000225742 MARF1Q9Y4F3 1742 aaKnown RBP27.34■■□□□ 1.97
SMARCD2-201ENST00000225742 CEP85Q6P2H3 762 aa27.34■■□□□ 1.97
SMARCD2-201ENST00000225742 SOX12O15370 315 aa27.33■■□□□ 1.97
SMARCD2-201ENST00000225742 CCT4P50991 539 aaKnown RBP27.33■■□□□ 1.97
SMARCD2-201ENST00000225742 BABAM1Q9NWV8 329 aa27.33■■□□□ 1.97
SMARCD2-201ENST00000225742 MSH6P52701 1360 aa27.33■■□□□ 1.96
SMARCD2-201ENST00000225742 SLC4A2P04920 1241 aa27.32■■□□□ 1.96
SMARCD2-201ENST00000225742 NLRP6P59044 892 aa27.32■■□□□ 1.96
SMARCD2-201ENST00000225742 CIZ1Q9ULV3 898 aaPredicted RBP27.32■■□□□ 1.96
SMARCD2-201ENST00000225742 HMMRO75330 724 aa27.3■■□□□ 1.96
SMARCD2-201ENST00000225742 TTC22Q5TAA0 569 aa27.3■■□□□ 1.96
SMARCD2-201ENST00000225742 FOXO3O43524 673 aa27.3■■□□□ 1.96
SMARCD2-201ENST00000225742 MCM4P33991 863 aa27.3■■□□□ 1.96
SMARCD2-201ENST00000225742 CACNA1FO60840 1977 aa27.29■■□□□ 1.96
SMARCD2-201ENST00000225742 HOXC9P31274 260 aa27.28■■□□□ 1.96
SMARCD2-201ENST00000225742 DDIT3P35638 169 aa27.28■■□□□ 1.96
SMARCD2-201ENST00000225742 NWD1Q149M9 1564 aa27.28■■□□□ 1.96
SMARCD2-201ENST00000225742 KCNA6P17658 529 aa27.27■■□□□ 1.96
SMARCD2-201ENST00000225742 KIF2CQ99661 725 aa27.27■■□□□ 1.96
SMARCD2-201ENST00000225742 GNAT3A8MTJ3 354 aa27.27■■□□□ 1.96
SMARCD2-201ENST00000225742 GSPT1P15170 499 aaKnown RBP27.27■■□□□ 1.96
SMARCD2-201ENST00000225742 STK31Q9BXU1 1019 aa27.26■■□□□ 1.95
SMARCD2-201ENST00000225742 SPRYD3Q8NCJ5 442 aa27.25■■□□□ 1.95
SMARCD2-201ENST00000225742 MEIS3Q99687 375 aa27.25■■□□□ 1.95
SMARCD2-201ENST00000225742 FAM208AQ9UK61 1670 aaKnown RBP27.24■■□□□ 1.95
SMARCD2-201ENST00000225742 CCDC30Q5VVM6 783 aa27.24■■□□□ 1.95
SMARCD2-201ENST00000225742 MIS18AQ9NYP9 233 aa27.24■■□□□ 1.95
SMARCD2-201ENST00000225742 CHD2O14647 1828 aaKnown RBP27.24■■□□□ 1.95
SMARCD2-201ENST00000225742 MAP3K5Q99683 1374 aa27.23■■□□□ 1.95
SMARCD2-201ENST00000225742 HSP90AB1P08238 724 aaKnown RBP27.23■■□□□ 1.95
SMARCD2-201ENST00000225742 N4BP2Q86UW6 1770 aaPredicted RBP27.22■■□□□ 1.95
SMARCD2-201ENST00000225742 L1TD1Q5T7N2 865 aaKnown RBP27.22■■□□□ 1.95
SMARCD2-201ENST00000225742 DDX11L8A8MPP1 907 aa27.21■■□□□ 1.95
SMARCD2-201ENST00000225742 CASC1Q6TDU7 716 aa27.21■■□□□ 1.95
SMARCD2-201ENST00000225742 ABTB2Q8N961 1025 aa27.21■■□□□ 1.95
SMARCD2-201ENST00000225742 G2E3Q7L622 706 aa27.2■■□□□ 1.95
SMARCD2-201ENST00000225742 PLPPR3Q6T4P5 718 aa27.2■■□□□ 1.94
SMARCD2-201ENST00000225742 K7ELQ4 463 aaPredicted RBP27.19■■□□□ 1.94
SMARCD2-201ENST00000225742 GNAI2P04899 355 aa27.19■■□□□ 1.94
SMARCD2-201ENST00000225742 GNAI3P08754 354 aa27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 OSBPL3Q9H4L5 887 aa27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 PHF8Q9UPP1 1060 aa27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 PXDNLA1KZ92 1463 aa27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 RABEP1Q15276 862 aa27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 TAF7Q15545 349 aaPredicted RBP27.18■■□□□ 1.94
SMARCD2-201ENST00000225742 C16orf71Q8IYS4 520 aaPredicted RBP27.17■■□□□ 1.94
SMARCD2-201ENST00000225742 IL27Q8NEV9 243 aa27.17■■□□□ 1.94
SMARCD2-201ENST00000225742 ZNF142P52746 1687 aaPredicted RBP27.16■■□□□ 1.94
SMARCD2-201ENST00000225742 PTMSP20962 102 aa27.16■■□□□ 1.94
SMARCD2-201ENST00000225742 LTN1O94822 1766 aa27.16■■□□□ 1.94
SMARCD2-201ENST00000225742 FLIIQ13045 1269 aa27.16■■□□□ 1.94
SMARCD2-201ENST00000225742 SLC4A10Q6U841 1118 aa27.16■■□□□ 1.94
SMARCD2-201ENST00000225742 ANKLE2Q86XL3 938 aa27.15■■□□□ 1.94
SMARCD2-201ENST00000225742 BRPF3Q9ULD4 1205 aa27.15■■□□□ 1.94
SMARCD2-201ENST00000225742 IL17REQ8NFR9 667 aa27.14■■□□□ 1.94
SMARCD2-201ENST00000225742 USP26Q9BXU7 913 aa27.14■■□□□ 1.94
SMARCD2-201ENST00000225742 CHMP4AQ9BY43 222 aa27.14■■□□□ 1.94
SMARCD2-201ENST00000225742 F6X3S4 739 aa27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 IP6K1Q92551 441 aa27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 PHRF1Q9P1Y6 1649 aaKnown RBP27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 SDSP20132 328 aa27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 RAB3GAP1Q15042 981 aa27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 NFAT5O94916 1531 aa27.13■■□□□ 1.93
SMARCD2-201ENST00000225742 GBP4Q96PP9 640 aa27.12■■□□□ 1.93
SMARCD2-201ENST00000225742 NUTM2GQ5VZR2 741 aa27.11■■□□□ 1.93
SMARCD2-201ENST00000225742 OTUD7AQ8TE49 926 aaPredicted RBP27.11■■□□□ 1.93
SMARCD2-201ENST00000225742 SMARCA5O60264 1052 aaPredicted RBP27.11■■□□□ 1.93
SMARCD2-201ENST00000225742 TRAK2O60296 914 aa27.11■■□□□ 1.93
SMARCD2-201ENST00000225742 REC8O95072 547 aa27.1■■□□□ 1.93
SMARCD2-201ENST00000225742 HSP90AA1P07900 732 aaKnown RBP27.1■■□□□ 1.93
SMARCD2-201ENST00000225742 ATP8B2P98198 1209 aa27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 6.9 ms