RNA–Protein interactions for RNA: ENST00000216484.6

SPTLC2-201, Transcript of serine palmitoyltransferase long chain base subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC2, Length 8,170 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC2-201ENST00000216484 FSD2A1L4K1 749 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 SCLT1Q96NL6 688 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 ARL1P40616 181 aaPredicted RBP17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 RAB3IL1Q8TBN0 382 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 SPECC1LQ69YQ0 1117 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 VPS36Q86VN1 386 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 ZSCAN29Q8IWY8 852 aaPredicted RBP17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 TMX1Q9H3N1 280 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 SSX2IPQ9Y2D8 614 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 SEPT6Q14141 434 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 L3MBTL2Q969R5 705 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 RUNDC1Q96C34 613 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 MNAT1P51948 309 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 TSNARE1Q96NA8 513 aa17.05■□□□□ 0.32
SPTLC2-201ENST00000216484 KIF18AQ8NI77 898 aa17.04■□□□□ 0.32
SPTLC2-201ENST00000216484 CCDC144AA2RUR9 1427 aa17.04■□□□□ 0.32
SPTLC2-201ENST00000216484 CDKL5O76039 1030 aa17.04■□□□□ 0.32
SPTLC2-201ENST00000216484 CFAP58Q5T655 872 aa17.04■□□□□ 0.32
SPTLC2-201ENST00000216484 NUP62CLQ9H1M0 184 aa17.04■□□□□ 0.32
SPTLC2-201ENST00000216484 FERMT2Q96AC1 680 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 GNAI1P63096 354 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 HNRNPMP52272 730 aaKnown RBP eCLIP17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 KLHL10Q6JEL2 608 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 PPP4R3AQ6IN85 833 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 FMN1Q68DA7 1419 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 FKBP4Q02790 459 aaKnown RBP eCLIP17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 CAMK4Q16566 473 aa17.03■□□□□ 0.32
SPTLC2-201ENST00000216484 KIF4BQ2VIQ3 1234 aa17.02■□□□□ 0.32
SPTLC2-201ENST00000216484 LMAN1P49257 510 aa17.02■□□□□ 0.32
SPTLC2-201ENST00000216484 FBF1Q8TES7 1133 aa17.02■□□□□ 0.32
SPTLC2-201ENST00000216484 PSMC4P43686 418 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 FKBP15Q5T1M5 1219 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 MYCNP04198 464 aaPredicted RBP17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 UBA5Q9GZZ9 404 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 IKBKGQ9Y6K9 419 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 A0A1W2PRG0 241 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 MXRA7P84157 204 aa17.02■□□□□ 0.31
SPTLC2-201ENST00000216484 PAIP2Q9BPZ3 127 aaKnown RBP17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 SIL1Q9H173 461 aa17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 URI1O94763 535 aaPredicted RBP17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 GTF2A1P52655 376 aaPredicted RBP17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 PRPF4BQ13523 1007 aaKnown RBP17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 CCDC6Q16204 474 aa17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 ZSCAN12O43309 604 aa17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 SREK1Q8WXA9 508 aaKnown RBP17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 C1orf115Q9H7X2 142 aa17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 CEP131Q9UPN4 1083 aa17.01■□□□□ 0.31
SPTLC2-201ENST00000216484 TDO2P48775 406 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 TNIP1Q15025 636 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 CCDC30Q5VVM6 783 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 NUP88Q99567 741 aaPredicted RBP17■□□□□ 0.31
SPTLC2-201ENST00000216484 NOL12Q9UGY1 213 aaKnown RBP eCLIP17■□□□□ 0.31
SPTLC2-201ENST00000216484 V9GYY5 206 aaPredicted RBP17■□□□□ 0.31
SPTLC2-201ENST00000216484 GTF2F1P35269 517 aaKnown RBP eCLIP17■□□□□ 0.31
SPTLC2-201ENST00000216484 PAFAH1B1P43034 410 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 TSG101Q99816 390 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 UBAC1Q9BSL1 405 aa17■□□□□ 0.31
SPTLC2-201ENST00000216484 SFPQP23246 707 aaKnown RBP eCLIP16.99■□□□□ 0.31
SPTLC2-201ENST00000216484 DNAAF4Q8WXU2 420 aa16.99■□□□□ 0.31
SPTLC2-201ENST00000216484 SEC63Q9UGP8 760 aaKnown RBP16.99■□□□□ 0.31
SPTLC2-201ENST00000216484 MAATS1Q7Z4T9 603 aa16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 CCDC96Q2M329 555 aa16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 TTC36A6NLP5 189 aa16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 MAP3K11Q16584 847 aa16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 GNAI2P04899 355 aa16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 NAA15Q9BXJ9 866 aaKnown RBP16.98■□□□□ 0.31
SPTLC2-201ENST00000216484 EFCAB2Q5VUJ9 269 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 SMARCC1Q92922 1105 aaPredicted RBP16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 CARMIL2Q6F5E8 1435 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 NUTM2GQ5VZR2 741 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 DDX46Q7L014 1031 aaKnown RBP16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 SYCE3A1L190 88 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 KIF2AO00139 706 aaPredicted RBP16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 NOL3O60936 208 aaKnown RBP16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 ATP2C2O75185 946 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 K7ELQ4 463 aaPredicted RBP16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 USP47Q96K76 1375 aa16.97■□□□□ 0.31
SPTLC2-201ENST00000216484 FERMT1Q9BQL6 677 aa16.96■□□□□ 0.31
SPTLC2-201ENST00000216484 SPINK5Q9NQ38 1064 aaPredicted RBP16.96■□□□□ 0.31
SPTLC2-201ENST00000216484 USO1O60763 962 aaKnown RBP16.96■□□□□ 0.31
SPTLC2-201ENST00000216484 MPHOSPH8Q99549 860 aa16.96■□□□□ 0.31
SPTLC2-201ENST00000216484 FGFR1OPO95684 399 aaKnown RBP16.96■□□□□ 0.31
SPTLC2-201ENST00000216484 ESPNB1AK53 854 aa16.96■□□□□ 0.3
SPTLC2-201ENST00000216484 ZHX1Q9UKY1 873 aaPredicted RBP16.96■□□□□ 0.3
SPTLC2-201ENST00000216484 HSPA4P34932 840 aa16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 BBXQ8WY36 941 aaPredicted RBP16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 KIF3CO14782 793 aa16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 TDRD12Q587J7 1177 aaKnown RBP16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 GNAI3P08754 354 aa16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 TPD52P55327 224 aaPredicted RBP16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 NLRP2Q9NX02 1062 aa16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 TOP1P11387 765 aaKnown RBP16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 ATF3P18847 181 aa16.95■□□□□ 0.3
SPTLC2-201ENST00000216484 RBM42Q9BTD8 480 aaKnown RBP16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 CEP112Q8N8E3 955 aa16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 NOP2P46087 812 aaKnown RBP16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 MAP7D1Q3KQU3 841 aa16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 ZSCAN25Q6NSZ9 544 aa16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 BLOC1S2Q6QNY1 142 aa16.94■□□□□ 0.3
SPTLC2-201ENST00000216484 PLCD3Q8N3E9 789 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms