RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 SLC26A3P40879 764 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 GJA8P48165 433 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 ITGA1P56199 1179 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 TMEM198Q66K66 360 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 EPGNQ6UW88 154 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 FAM43BQ6ZT52 329 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 RBM4BQ9BQ04 359 aaKnown RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 RBM4Q9BWF3 364 aaKnown RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 SF3B1O75533 1304 aaKnown RBP eCLIP19.35■□□□□ 0.693e-6■■■■■ 49.3
USP48-201ENST00000308271 RGPD8O14715 1765 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 PIGRP01833 764 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 TAB1Q15750 504 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 DPYSL2Q16555 572 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 LDLRAP1Q5SW96 308 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 CLEC4DQ8WXI8 215 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 PRG3Q9Y2Y8 225 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 CASTOR2A6NHX0 329 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 SAGE2PA6NJ88 616 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 TSC22D2O75157 780 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 BCAS2O75934 225 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 T-ENOLP0DO92 83 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 GPD2P43304 727 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 HECTD2Q5U5R9 776 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 SH3BP5LQ7L8J4 393 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 ZBTB8BQ8NAP8 495 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 AZIN2Q96A70 460 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 DERAQ9Y315 318 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 COPG1Q9Y678 874 aaKnown RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 AMHP03971 560 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 CLCN2P51788 898 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 GJC2Q5T442 439 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 PLEKHM3Q6ZWE6 761 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 RIOX2Q8IUF8 465 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 MARVELD2Q8N4S9 558 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 DDX51Q8N8A6 666 aaKnown RBP eCLIP19.35■□□□□ 0.69
USP48-201ENST00000308271 TWIST2Q8WVJ9 160 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 STARD8Q92502 1023 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 PRRG3Q9BZD7 231 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 HIPK3Q9H422 1215 aa19.35■□□□□ 0.69
USP48-201ENST00000308271 GPC6Q9Y625 555 aaPredicted RBP19.35■□□□□ 0.69
USP48-201ENST00000308271 DNAJA2O60884 412 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 TULP3O75386 442 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 IRF1P10914 325 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ARF4P18085 180 aaPredicted RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 MTHFRP42898 656 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ASPAP45381 313 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 TMEM132BQ14DG7 1078 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 PPM1LQ5SGD2 360 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 CASP12Q6UXS9 341 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ANKS3Q6ZW76 656 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 TAMM41Q96BW9 452 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 HSPBAP1Q96EW2 488 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 SLC47A1Q96FL8 570 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 AGAP2Q99490 1192 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 FAM126AQ9BYI3 521 aaPredicted RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 TSPAN3O60637 253 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 FARP2O94887 1054 aaPredicted RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 BDNFP23560 247 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 RHOAP61586 193 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 RHDQ02161 417 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ACAP2Q15057 778 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 CNOT6Q9ULM6 557 aaKnown RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 MAFBQ9Y5Q3 323 aaPredicted RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 CBX4O00257 560 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 DHX15O43143 795 aaKnown RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 ARIH2O95376 493 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 MPP1Q00013 466 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 DEPDC4Q8N2C3 294 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ST13P5Q8NFI4 369 aaPredicted RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 NODALQ96S42 347 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ADGRE2Q9UHX3 823 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 IKZF3Q9UKT9 509 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 ULK1O75385 1050 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 RFPL1O75677 317 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 GJB1P08034 283 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 CDH18Q13634 790 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 SH3PXD2AQ5TCZ1 1133 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 HIPK1Q86Z02 1210 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 RAB42Q8N4Z0 105 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 CCDC185Q8N715 623 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 GNPTGQ9UJJ9 305 aa19.34■□□□□ 0.69
USP48-201ENST00000308271 TMA7Q9Y2S6 64 aaKnown RBP19.34■□□□□ 0.69
USP48-201ENST00000308271 A0A088AWK7 358 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 BUD23O43709 281 aaKnown RBP19.33■□□□□ 0.69
USP48-201ENST00000308271 UGT2B11O75310 529 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 OR6B1O95007 311 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 NUMBP49757 651 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 CA9Q16790 459 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 PTPRNQ16849 979 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 TYW3Q6IPR3 259 aaKnown RBP19.33■□□□□ 0.69
USP48-201ENST00000308271 SAPCD2Q86UD0 394 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 IGDCC3Q8IVU1 814 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 SLC44A2Q8IWA5 706 aaPredicted RBP19.33■□□□□ 0.69
USP48-201ENST00000308271 PDE10AQ9Y233 779 aa19.33■□□□□ 0.69
USP48-201ENST00000308271 ITGB6P18564 788 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 POLR2JP52435 117 aaKnown RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 RPL38P63173 70 aaKnown RBP19.33■□□□□ 0.68
USP48-201ENST00000308271 MFSD14CQ5VZR4 134 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 CLEC6AQ6EIG7 209 aa19.33■□□□□ 0.68
USP48-201ENST00000308271 PAOXQ6QHF9 649 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms