RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHM2	YLR058C	TIF4631	P39935	952 aa	Known RBP	12	□□□□□ -0.49
SHM2	YLR058C	ACA1	P39970	489 aa		12	□□□□□ -0.49
SHM2	YLR058C	FOL1	P53848	824 aa		12	□□□□□ -0.49
SHM2	YLR058C	VPS30	Q02948	557 aa		12	□□□□□ -0.49
SHM2	YLR058C	BIK1	P11709	440 aa		11.99	□□□□□ -0.49
SHM2	YLR058C	RNR3	P21672	869 aa	Known RBP	11.99	□□□□□ -0.49
SHM2	YLR058C	TTI1	P36097	1038 aa		11.99	□□□□□ -0.49
SHM2	YLR058C	PES4	P39684	611 aa		11.99	□□□□□ -0.49
SHM2	YLR058C	BUD6	P41697	788 aa		11.99	□□□□□ -0.49
SHM2	YLR058C	ELG1	Q12050	791 aa		11.99	□□□□□ -0.49
SHM2	YLR058C	CPA2	P03965	1118 aa	Known RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	NUC1	P08466	329 aa		11.98	□□□□□ -0.49
SHM2	YLR058C	SAM2	P19358	384 aa	Known RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	HCA4	P20448	770 aa	Known RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	SPB4	P25808	606 aa	Predicted RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	BMH2	P34730	273 aa	Known RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	HRQ1	Q05549	1077 aa		11.98	□□□□□ -0.49
SHM2	YLR058C	YPL150W	Q12152	901 aa		11.98	□□□□□ -0.49
SHM2	YLR058C	CLF1	Q12309	687 aa	Predicted RBP	11.98	□□□□□ -0.49
SHM2	YLR058C	KRS1	P15180	591 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	SRP54	P20424	541 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	SWI4	P25302	1093 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	PRX1	P34227	261 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	RPN10	P38886	268 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	YGL081W	P53156	320 aa		11.97	□□□□□ -0.49
SHM2	YLR058C	TYW1	Q08960	810 aa	Known RBP	11.97	□□□□□ -0.49
SHM2	YLR058C	GIN4	Q12263	1142 aa		11.97	□□□□□ -0.49
SHM2	YLR058C	UBP9	P39967	754 aa		11.96	□□□□□ -0.49
SHM2	YLR058C	RRT6	P53117	311 aa	Predicted RBP	11.96	□□□□□ -0.49
SHM2	YLR058C	PEX29	Q03370	554 aa		11.96	□□□□□ -0.49
SHM2	YLR058C	CBP3	P21560	335 aa		11.95	□□□□□ -0.5
SHM2	YLR058C	DIT2	P21595	489 aa		11.95	□□□□□ -0.5
SHM2	YLR058C	DJP1	P40564	432 aa		11.95	□□□□□ -0.5
SHM2	YLR058C	DSE3	Q08729	430 aa		11.95	□□□□□ -0.5
SHM2	YLR058C	ERG12	P07277	443 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	RFC5	P38251	354 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	RXT2	P38255	430 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	BDH2	P39713	417 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	PCI8	P40512	444 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	MDM1	Q01846	1127 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	YDR341C	Q05506	607 aa	Known RBP	11.94	□□□□□ -0.5
SHM2	YLR058C	MET6	P05694	767 aa	Known RBP	11.94	□□□□□ -0.5
SHM2	YLR058C	VPS45	P38932	577 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	PEX14	P53112	341 aa		11.94	□□□□□ -0.5
SHM2	YLR058C	SUB2	Q07478	446 aa	Known RBP	11.94	□□□□□ -0.5
SHM2	YLR058C	HSP82	P02829	709 aa	Known RBP	11.93	□□□□□ -0.5
SHM2	YLR058C	PCS60	P38137	543 aa	Known RBP RIP-Chip data	11.93	□□□□□ -0.5	not detected
SHM2	YLR058C	TOM71	P38825	639 aa	Known RBP	11.93	□□□□□ -0.5
SHM2	YLR058C	GDE1	Q02979	1223 aa		11.93	□□□□□ -0.5
SHM2	YLR058C	CIT1	P00890	479 aa		11.92	□□□□□ -0.5
SHM2	YLR058C	CDC6	P09119	513 aa		11.92	□□□□□ -0.5
SHM2	YLR058C	OCT1	P35999	772 aa		11.92	□□□□□ -0.5
SHM2	YLR058C	MAL33	P38157	468 aa		11.92	□□□□□ -0.5
SHM2	YLR058C	HST1	P53685	503 aa		11.92	□□□□□ -0.5
SHM2	YLR058C	FBP1	P09201	348 aa		11.91	□□□□□ -0.5
SHM2	YLR058C	STI1	P15705	589 aa	Known RBP RIP-Chip data	11.91	□□□□□ -0.5	not detected
SHM2	YLR058C	VPS1	P21576	704 aa	Known RBP	11.91	□□□□□ -0.5
SHM2	YLR058C	SOL4	P53315	255 aa		11.91	□□□□□ -0.5
SHM2	YLR058C	SUE1	Q06524	206 aa		11.91	□□□□□ -0.5
SHM2	YLR058C	MBR1	P23493	339 aa		11.9	□□□□□ -0.5
SHM2	YLR058C	YDJ1	P25491	409 aa	Known RBP	11.9	□□□□□ -0.5
SHM2	YLR058C	RDS1	P25611	832 aa		11.9	□□□□□ -0.5
SHM2	YLR058C	MYO1	P08964	1928 aa		11.89	□□□□□ -0.51
SHM2	YLR058C	HYR1	P40581	163 aa	Known RBP	11.89	□□□□□ -0.51
SHM2	YLR058C	LYS14	P40971	790 aa		11.89	□□□□□ -0.51
SHM2	YLR058C	YJL007C	P47080	104 aa		11.89	□□□□□ -0.51
SHM2	YLR058C	YML037C	Q03703	340 aa		11.89	□□□□□ -0.51
SHM2	YLR058C	UTP4	Q06679	776 aa	Known RBP	11.89	□□□□□ -0.51
SHM2	YLR058C	DCS2	Q12123	353 aa		11.89	□□□□□ -0.51
SHM2	YLR058C	HVG1	P0CE11	249 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	PGI1	P12709	554 aa	Known RBP	11.88	□□□□□ -0.51
SHM2	YLR058C	MSP1	P28737	362 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	YGL138C	P53122	345 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	PIL1	P53252	339 aa	Known RBP	11.88	□□□□□ -0.51
SHM2	YLR058C	LSB1	P53281	241 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	EAF7	P53911	425 aa	Known RBP	11.88	□□□□□ -0.51
SHM2	YLR058C	GIS4	Q04233	774 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	PEX19	Q07418	342 aa		11.88	□□□□□ -0.51
SHM2	YLR058C	CCT3	P39077	534 aa	Known RBP	11.87	□□□□□ -0.51
SHM2	YLR058C	ASE1	P50275	885 aa		11.87	□□□□□ -0.51
SHM2	YLR058C	HAP5	Q02516	242 aa		11.87	□□□□□ -0.51
SHM2	YLR058C	VIP1	Q06685	1146 aa	Known RBP	11.87	□□□□□ -0.51
SHM2	YLR058C	GET3	Q12154	354 aa	Known RBP	11.87	□□□□□ -0.51
SHM2	YLR058C	MAK11	P20484	414 aa	Known RBP	11.86	□□□□□ -0.51
SHM2	YLR058C	ASF1	P32447	279 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	BSD2	P38356	321 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	CIR1	P42940	261 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	NAF1	P53919	492 aa	Known RBP	11.86	□□□□□ -0.51
SHM2	YLR058C	CEX1	Q12453	761 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	RAD18	P10862	487 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	RPL8A	P17076	256 aa	Known RBP	11.86	□□□□□ -0.51
SHM2	YLR058C	PER1	P25625	357 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	SEC20	P28791	383 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	PHO88	P38264	188 aa	Predicted RBP	11.86	□□□□□ -0.51
SHM2	YLR058C	VAB2	P40003	282 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	TPM2	P40414	161 aa		11.86	□□□□□ -0.51
SHM2	YLR058C	NET1	P47035	1189 aa		11.85	□□□□□ -0.51
SHM2	YLR058C	UBX5	Q06682	500 aa		11.85	□□□□□ -0.51
SHM2	YLR058C	ARP8	Q12386	881 aa	Known RBP RIP-Chip data	11.85	□□□□□ -0.51	not detected
SHM2	YLR058C	ETP1	P38748	585 aa	Known RBP	11.84	□□□□□ -0.51

Retrieved 100 of 5,963 RNA–protein pairs in 51.6 ms