RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	RPN12	P32496	274 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	MET1	P36150	593 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	UBP12	P39538	1254 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	BOL3	P39724	118 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	YER156C	P40093	338 aa	Known RBP	4.95	□□□□□ -1.62
UBP6	YFR010W	THI12	P42883	340 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	THI5	P43534	340 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	YJR142W	P47173	342 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	THI11	P47183	340 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	TLG1	Q03322	224 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	THI13	Q07748	340 aa		4.95	□□□□□ -1.62
UBP6	YFR010W	MCX1	P38323	520 aa	Predicted RBP	4.94	□□□□□ -1.62
UBP6	YFR010W	MNN1	P39106	762 aa		4.94	□□□□□ -1.62
UBP6	YFR010W	APC11	Q12157	165 aa		4.94	□□□□□ -1.62
UBP6	YFR010W	SNU66	Q12420	587 aa	Predicted RBP	4.94	□□□□□ -1.62
UBP6	YFR010W	MRP10	O75012	95 aa		4.93	□□□□□ -1.62
UBP6	YFR010W	DPB3	P27344	201 aa		4.93	□□□□□ -1.62
UBP6	YFR010W	GRS1	P38088	690 aa	Known RBP	4.93	□□□□□ -1.62
UBP6	YFR010W	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
UBP6	YFR010W	GLO3	P38682	493 aa	Known RBP	4.93	□□□□□ -1.62
UBP6	YFR010W	YJR107W	P47145	328 aa		4.93	□□□□□ -1.62
UBP6	YFR010W	ATG1	P53104	897 aa		4.93	□□□□□ -1.62
UBP6	YFR010W	ALD6	P54115	500 aa	Known RBP	4.93	□□□□□ -1.62
UBP6	YFR010W	TY4B-P	A0A0B7P3V8	1104 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	FUR4	P05316	633 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	TRL1	P09880	827 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.92	□□□□□ -1.62	not detected
UBP6	YFR010W	NAR1	P23503	491 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	PGM2	P37012	569 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	MAL31	P38156	614 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	NMD3	P38861	518 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	HXT8	P40886	569 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	YJL049W	P47048	450 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	SUT1	P53032	299 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	GIS4	Q04233	774 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	LSO1	Q3E827	93 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	TY4A-H	Q6Q5P6	413 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	ALG14	P38242	237 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	YEN1	P40028	759 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	FAF1	P40546	346 aa	Predicted RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	MDJ2	P42834	146 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	YDR215C	Q12240	137 aa		4.92	□□□□□ -1.62
UBP6	YFR010W	GLT1	Q12680	2145 aa	Known RBP	4.92	□□□□□ -1.62
UBP6	YFR010W	YCK2	P23292	546 aa	Known RBP	4.91	□□□□□ -1.62
UBP6	YFR010W	VMS1	Q04311	632 aa	Known RBP	4.91	□□□□□ -1.62
UBP6	YFR010W	UTP14	Q04500	899 aa	Known RBP	4.91	□□□□□ -1.62
UBP6	YFR010W	MUM2	P38236	366 aa		4.9	□□□□□ -1.63
UBP6	YFR010W	YIL165C	P40446	119 aa		4.9	□□□□□ -1.63
UBP6	YFR010W	MSH4	P40965	878 aa	Predicted RBP	4.9	□□□□□ -1.63
UBP6	YFR010W	RGD2	P43556	714 aa		4.9	□□□□□ -1.63
UBP6	YFR010W	PPT1	P53043	513 aa		4.9	□□□□□ -1.63
UBP6	YFR010W	MNL2	Q12205	849 aa		4.9	□□□□□ -1.63
UBP6	YFR010W	MET6	P05694	767 aa	Known RBP	4.89	□□□□□ -1.63
UBP6	YFR010W	FIR1	P40020	876 aa		4.89	□□□□□ -1.63
UBP6	YFR010W	ACF4	P47129	309 aa		4.89	□□□□□ -1.63
UBP6	YFR010W	MDM1	Q01846	1127 aa		4.89	□□□□□ -1.63
UBP6	YFR010W	EMG1	Q06287	252 aa	Known RBP	4.89	□□□□□ -1.63
UBP6	YFR010W	CDC53	Q12018	815 aa	Known RBP	4.89	□□□□□ -1.63
UBP6	YFR010W	SLN1	P39928	1220 aa	Predicted RBP	4.88	□□□□□ -1.63
UBP6	YFR010W	VPS16	Q03308	798 aa		4.88	□□□□□ -1.63
UBP6	YFR010W	RSC2	Q06488	889 aa		4.88	□□□□□ -1.63
UBP6	YFR010W	BDF2	Q07442	638 aa		4.88	□□□□□ -1.63
UBP6	YFR010W	MRC1	P25588	1096 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	RAD27	P26793	382 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	PAF1	P38351	445 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	RAD55	P38953	406 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	NTA1	P40354	457 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	DAK2	P43550	591 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	YJL181W	P46987	611 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	YOR378W	Q08902	515 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	PIN2	Q12057	282 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	YOR131C	Q12486	218 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	SWI3	P32591	825 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	AIM46	P38885	310 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	FYV10	P40492	516 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	PRY1	P47032	299 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	YGR021W	P53212	290 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	PEX8	P53248	589 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	PKH1	Q03407	766 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	ATG16	Q03818	150 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	WRS1	Q12109	432 aa	Known RBP	4.87	□□□□□ -1.63
UBP6	YFR010W	TIF6	Q12522	245 aa	Known RBP	4.87	□□□□□ -1.63
UBP6	YFR010W	VPS5	Q92331	675 aa		4.87	□□□□□ -1.63
UBP6	YFR010W	SMC1	P32908	1225 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	AMN1	P38285	549 aa	Predicted RBP	4.86	□□□□□ -1.63
UBP6	YFR010W	YBR287W	P38355	427 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	SNF7	P39929	240 aa	Known RBP	4.86	□□□□□ -1.63
UBP6	YFR010W	QDR1	P40475	563 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	MAD1	P40957	749 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	FOL1	P53848	824 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	GDE1	Q02979	1223 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	SPO20	Q04359	397 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	ESF1	Q06344	628 aa	Known RBP	4.86	□□□□□ -1.63
UBP6	YFR010W	IMH1	Q06704	911 aa	Known RBP	4.86	□□□□□ -1.63
UBP6	YFR010W	MCA1	Q08601	432 aa		4.86	□□□□□ -1.63
UBP6	YFR010W	TY1B-A	O13527	1196 aa	Known RBP	4.85	□□□□□ -1.63
UBP6	YFR010W	CLN2	P20438	545 aa		4.85	□□□□□ -1.63
UBP6	YFR010W	CDC11	P32458	415 aa		4.85	□□□□□ -1.63
UBP6	YFR010W	TFC3	P34111	1160 aa		4.85	□□□□□ -1.63
UBP6	YFR010W	RMD1	Q03441	430 aa		4.85	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 13 ms