RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC4	YFL005W	COB	P00163	385 aa		5.08	□□□□□ -1.6
SEC4	YFL005W	YCR015C	P25616	317 aa		5.08	□□□□□ -1.6
SEC4	YFL005W	VPS35	P34110	944 aa		5.08	□□□□□ -1.6
SEC4	YFL005W	PAM1	P37304	830 aa	Known RBP	5.08	□□□□□ -1.6
SEC4	YFL005W	SEA4	P38164	1038 aa		5.08	□□□□□ -1.6
SEC4	YFL005W	YJR107W	P47145	328 aa		5.08	□□□□□ -1.6
SEC4	YFL005W	PYC2	P32327	1180 aa	Known RBP	5.07	□□□□□ -1.6
SEC4	YFL005W	SEC8	P32855	1065 aa		5.07	□□□□□ -1.6
SEC4	YFL005W	DUR3	P33413	735 aa		5.07	□□□□□ -1.6
SEC4	YFL005W	POL12	P38121	705 aa	Predicted RBP	5.07	□□□□□ -1.6
SEC4	YFL005W	SDH1	Q00711	640 aa		5.07	□□□□□ -1.6
SEC4	YFL005W	BSC2	Q05611	235 aa		5.07	□□□□□ -1.6
SEC4	YFL005W	ELG1	Q12050	791 aa		5.07	□□□□□ -1.6
SEC4	YFL005W	TFA2	P36145	328 aa		5.06	□□□□□ -1.6
SEC4	YFL005W	DAK2	P43550	591 aa		5.06	□□□□□ -1.6
SEC4	YFL005W	ALD3	P54114	506 aa		5.06	□□□□□ -1.6
SEC4	YFL005W	OYE2	Q03558	400 aa	Known RBP	5.06	□□□□□ -1.6
SEC4	YFL005W	DFG16	Q99234	619 aa		5.06	□□□□□ -1.6
SEC4	YFL005W	RPT1	P33299	467 aa	Known RBP	5.05	□□□□□ -1.6
SEC4	YFL005W	YKL222C	P35995	705 aa		5.05	□□□□□ -1.6
SEC4	YFL005W	CIC1	P38779	376 aa	Known RBP	5.05	□□□□□ -1.6
SEC4	YFL005W	SVF1	Q05515	481 aa		5.05	□□□□□ -1.6
SEC4	YFL005W	NOC3	Q07896	663 aa	Predicted RBP	5.05	□□□□□ -1.6
SEC4	YFL005W	GCD1	P09032	578 aa	Predicted RBP	5.04	□□□□□ -1.6
SEC4	YFL005W	FUS1	P11710	512 aa		5.04	□□□□□ -1.6
SEC4	YFL005W	MET10	P39692	1035 aa		5.04	□□□□□ -1.6
SEC4	YFL005W	PRP43	P53131	767 aa	Known RBP	5.04	□□□□□ -1.6
SEC4	YFL005W	TOS4	Q06266	489 aa		5.04	□□□□□ -1.6
SEC4	YFL005W	KIP3	P53086	805 aa	Known RBP	5.03	□□□□□ -1.6
SEC4	YFL005W	INP54	Q08227	384 aa	Known RBP	5.03	□□□□□ -1.6
SEC4	YFL005W	OXR1	Q08952	273 aa		5.03	□□□□□ -1.6
SEC4	YFL005W	FLP1	P03870	423 aa		5.02	□□□□□ -1.61
SEC4	YFL005W	NEO1	P40527	1151 aa		5.02	□□□□□ -1.61
SEC4	YFL005W	ESC8	Q08119	714 aa		5.02	□□□□□ -1.61
SEC4	YFL005W	NSI1	Q12457	570 aa		5.02	□□□□□ -1.61
SEC4	YFL005W	ERS1	P17261	260 aa		5.01	□□□□□ -1.61
SEC4	YFL005W	YHL008C	P38750	627 aa		5.01	□□□□□ -1.61
SEC4	YFL005W	FAR11	P53917	953 aa		5.01	□□□□□ -1.61
SEC4	YFL005W	GLO4	Q12320	285 aa		5.01	□□□□□ -1.61
SEC4	YFL005W	NAP1	P25293	417 aa	Known RBP	5	□□□□□ -1.61
SEC4	YFL005W	MCM2	P29469	868 aa		5	□□□□□ -1.61
SEC4	YFL005W	ECM2	P38241	364 aa	Known RBP	5	□□□□□ -1.61
SEC4	YFL005W	FYV10	P40492	516 aa		5	□□□□□ -1.61
SEC4	YFL005W	MMM1	P41800	426 aa		5	□□□□□ -1.61
SEC4	YFL005W	YNR065C	P53751	1116 aa		5	□□□□□ -1.61
SEC4	YFL005W	RMD1	Q03441	430 aa		5	□□□□□ -1.61
SEC4	YFL005W	YCS4	Q06156	1176 aa		5	□□□□□ -1.61
SEC4	YFL005W	HVG1	P0CE11	249 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	GAS1	P22146	559 aa	Known RBP	4.99	□□□□□ -1.61
SEC4	YFL005W	RIM11	P38615	370 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	CIT3	P43635	486 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	YJR124C	P47159	448 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	MON1	P53129	644 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	YGR122W	P53272	402 aa		4.99	□□□□□ -1.61
SEC4	YFL005W	HXK1	P04806	485 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	UGA4	P32837	571 aa		4.98	□□□□□ -1.61
SEC4	YFL005W	RPS26A	P39938	119 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	RPS26B	P39939	119 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	HAS1	Q03532	505 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	MSH6	Q03834	1242 aa		4.98	□□□□□ -1.61
SEC4	YFL005W	SPR28	Q04921	423 aa		4.98	□□□□□ -1.61
SEC4	YFL005W	YOR059C	Q08448	450 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	CMR1	Q12510	522 aa	Known RBP	4.98	□□□□□ -1.61
SEC4	YFL005W	CYC8	P14922	966 aa		4.97	□□□□□ -1.61
SEC4	YFL005W	KAR2	P16474	682 aa	Known RBP	4.97	□□□□□ -1.61
SEC4	YFL005W	PRP40	P33203	583 aa	Known RBP	4.97	□□□□□ -1.61
SEC4	YFL005W	NUT1	P53114	1132 aa		4.97	□□□□□ -1.61
SEC4	YFL005W	DAL4	Q04895	635 aa		4.97	□□□□□ -1.61
SEC4	YFL005W	YOR223W	Q12015	292 aa		4.97	□□□□□ -1.61
SEC4	YFL005W	NPR1	P22211	790 aa		4.96	□□□□□ -1.62
SEC4	YFL005W	PEP7	P32609	515 aa		4.96	□□□□□ -1.62
SEC4	YFL005W	RVS167	P39743	482 aa	Known RBP	4.96	□□□□□ -1.62
SEC4	YFL005W	TAF1	P46677	1066 aa		4.96	□□□□□ -1.62
SEC4	YFL005W	RCM1	P53972	490 aa		4.96	□□□□□ -1.62
SEC4	YFL005W	ESF1	Q06344	628 aa	Known RBP	4.96	□□□□□ -1.62
SEC4	YFL005W	RAD2	P07276	1031 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	HSP78	P33416	811 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	WHI3	P34761	661 aa	Known RBP	4.95	□□□□□ -1.62
SEC4	YFL005W	FAA3	P39002	694 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	GIP4	P39732	760 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	MRPS18	P42847	217 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	SAP155	P43612	1002 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	JIP5	Q06214	492 aa	Predicted RBP	4.95	□□□□□ -1.62
SEC4	YFL005W	CDA2	Q06703	312 aa		4.95	□□□□□ -1.62
SEC4	YFL005W	PRP5	P21372	849 aa	Predicted RBP	4.94	□□□□□ -1.62
SEC4	YFL005W	TSA1	P34760	196 aa	Known RBP	4.94	□□□□□ -1.62
SEC4	YFL005W	PMT7	Q06644	662 aa		4.94	□□□□□ -1.62
SEC4	YFL005W	MCD1	Q12158	566 aa		4.94	□□□□□ -1.62
SEC4	YFL005W	YLL054C	Q12244	843 aa		4.94	□□□□□ -1.62
SEC4	YFL005W	PRE9	P23638	258 aa	Known RBP	4.93	□□□□□ -1.62
SEC4	YFL005W	GPT2	P36148	743 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	FET4	P40988	552 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	YAF9	P53930	226 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	ULP1	Q02724	621 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	YPL109C	Q02981	657 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	YMR074C	Q04773	145 aa		4.93	□□□□□ -1.62
SEC4	YFL005W	MCM5	P29496	775 aa	Known RBP	4.92	□□□□□ -1.62
SEC4	YFL005W	THI80	P35202	319 aa		4.92	□□□□□ -1.62
SEC4	YFL005W	MNR2	P35724	969 aa		4.92	□□□□□ -1.62
SEC4	YFL005W	ADI1	Q03677	179 aa		4.92	□□□□□ -1.62

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