RNA–Protein interactions for RNA: YDL060W

TSR1, Transcript of Protein required for processing of 20S pre-rRNA in the cytoplasm, yeast

Gene TSR1, Length 2,367 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TSR1	YDL060W	MCM5	P29496	775 aa	Known RBP	4.93	□□□□□ -1.62
TSR1	YDL060W	NNF1	P47149	201 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	NUT1	P53114	1132 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	MON1	P53129	644 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	MSH6	Q03834	1242 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	HVG1	P0CE11	249 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	POL32	P47110	350 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	YCS4	Q06156	1176 aa		4.93	□□□□□ -1.62
TSR1	YDL060W	COB	P00163	385 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	RIM11	P38615	370 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	SHU2	P38957	223 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	AKR1	P39010	764 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	KIP3	P53086	805 aa	Known RBP	4.92	□□□□□ -1.62
TSR1	YDL060W	CMR1	Q12510	522 aa	Known RBP	4.92	□□□□□ -1.62
TSR1	YDL060W	ERS1	P17261	260 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	VPS35	P34110	944 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	YKL077W	P36081	392 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	KAE1	P36132	386 aa		4.92	□□□□□ -1.62
TSR1	YDL060W	NUG1	P40010	520 aa	Known RBP	4.92	□□□□□ -1.62
TSR1	YDL060W	HTS1	P07263	546 aa	Known RBP	4.91	□□□□□ -1.62
TSR1	YDL060W	NMD2	P38798	1089 aa	Known RBP	4.91	□□□□□ -1.62
TSR1	YDL060W	YOR223W	Q12015	292 aa		4.91	□□□□□ -1.62
TSR1	YDL060W	REC8	Q12188	680 aa		4.91	□□□□□ -1.62
TSR1	YDL060W	CHS2	P14180	963 aa		4.91	□□□□□ -1.62
TSR1	YDL060W	KAR2	P16474	682 aa	Known RBP	4.91	□□□□□ -1.62
TSR1	YDL060W	SAF1	P38352	637 aa		4.91	□□□□□ -1.62
TSR1	YDL060W	YJR008W	P47085	338 aa		4.91	□□□□□ -1.62
TSR1	YDL060W	UTP22	P53254	1237 aa	Predicted RBP	4.91	□□□□□ -1.62
TSR1	YDL060W	DUR3	P33413	735 aa		4.9	□□□□□ -1.62
TSR1	YDL060W	GCV1	P48015	400 aa		4.9	□□□□□ -1.62
TSR1	YDL060W	RTS3	P53289	263 aa		4.9	□□□□□ -1.62
TSR1	YDL060W	SVF1	Q05515	481 aa		4.9	□□□□□ -1.63
TSR1	YDL060W	WHI5	Q12416	295 aa		4.9	□□□□□ -1.63
TSR1	YDL060W	PRP5	P21372	849 aa	Predicted RBP	4.89	□□□□□ -1.63
TSR1	YDL060W	NAM7	P30771	971 aa	Known RBP	4.89	□□□□□ -1.63
TSR1	YDL060W	EBP2	P36049	427 aa	Known RBP	4.89	□□□□□ -1.63
TSR1	YDL060W	NCE103	P53615	221 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	GIC2	Q06648	383 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	YIG1	Q08956	461 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	SEC8	P32855	1065 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	MAC1	P35192	417 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	ATG14	P38270	344 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	RNH70	P53331	553 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	MEC3	Q02574	474 aa		4.89	□□□□□ -1.63
TSR1	YDL060W	OYE2	Q03558	400 aa	Known RBP	4.89	□□□□□ -1.63
TSR1	YDL060W	MAG2	Q06436	670 aa	Known RBP	4.89	□□□□□ -1.63
TSR1	YDL060W	PHO4	P07270	312 aa	Known RBP	4.88	□□□□□ -1.63
TSR1	YDL060W	REI1	P38344	393 aa	Predicted RBP	4.88	□□□□□ -1.63
TSR1	YDL060W	SAP155	P43612	1002 aa		4.88	□□□□□ -1.63
TSR1	YDL060W	DAL4	Q04895	635 aa		4.88	□□□□□ -1.63
TSR1	YDL060W	MET4	P32389	672 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	SQT1	P35184	431 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	RSM26	P47141	266 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	ALO1	P54783	526 aa	Known RBP	4.87	□□□□□ -1.63
TSR1	YDL060W	DOT1	Q04089	582 aa	Known RBP	4.87	□□□□□ -1.63
TSR1	YDL060W	JIP5	Q06214	492 aa	Predicted RBP	4.87	□□□□□ -1.63
TSR1	YDL060W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
TSR1	YDL060W	AVO1	Q08236	1176 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	PGM1	P33401	570 aa	Known RBP	4.87	□□□□□ -1.63
TSR1	YDL060W	MED7	Q08278	222 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	NSI1	Q12457	570 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	YOL098C	Q12496	1037 aa		4.87	□□□□□ -1.63
TSR1	YDL060W	SWE1	P32944	819 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	PRP40	P33203	583 aa	Known RBP	4.86	□□□□□ -1.63
TSR1	YDL060W	OMA1	P36163	345 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	DAK2	P43550	591 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	YLR122C	Q12312	125 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	RPT1	P33299	467 aa	Known RBP	4.86	□□□□□ -1.63
TSR1	YDL060W	MGE1	P38523	228 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	YGR130C	P53278	816 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	PEX13	P80667	386 aa		4.86	□□□□□ -1.63
TSR1	YDL060W	GPT2	P36148	743 aa		4.85	□□□□□ -1.63
TSR1	YDL060W	ALG6	Q12001	544 aa	Known RBP	4.85	□□□□□ -1.63
TSR1	YDL060W	MSB1	P21339	1137 aa	Known RBP	4.85	□□□□□ -1.63
TSR1	YDL060W	ARL1	P38116	183 aa	Known RBP	4.85	□□□□□ -1.63
TSR1	YDL060W	MTR4	P47047	1073 aa	Known RBP	4.85	□□□□□ -1.63
TSR1	YDL060W	PPG1	P32838	368 aa		4.84	□□□□□ -1.64
TSR1	YDL060W	YRB30	P53107	440 aa	Predicted RBP	4.84	□□□□□ -1.64
TSR1	YDL060W	MMM1	P41800	426 aa		4.83	□□□□□ -1.64
TSR1	YDL060W	LIP5	P32875	414 aa		4.83	□□□□□ -1.64
TSR1	YDL060W	SPO74	P45819	413 aa		4.83	□□□□□ -1.64
TSR1	YDL060W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
TSR1	YDL060W	ULP1	Q02724	621 aa		4.83	□□□□□ -1.64
TSR1	YDL060W	CYC7	P00045	113 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	VAC8	P39968	578 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	YJR107W	P47145	328 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	ELA1	P53861	379 aa	Predicted RBP	4.82	□□□□□ -1.64
TSR1	YDL060W	UBX5	Q06682	500 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	TRP3	P00937	484 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	MSH3	P25336	1018 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	TOS1	P38288	455 aa		4.82	□□□□□ -1.64
TSR1	YDL060W	SUB1	P54000	292 aa	Known RBP	4.82	□□□□□ -1.64
TSR1	YDL060W	NOG1	Q02892	647 aa	Known RBP	4.82	□□□□□ -1.64
TSR1	YDL060W	YOR059C	Q08448	450 aa	Known RBP	4.82	□□□□□ -1.64
TSR1	YDL060W	PRE9	P23638	258 aa	Known RBP	4.81	□□□□□ -1.64
TSR1	YDL060W	EXO5	P38289	585 aa		4.81	□□□□□ -1.64
TSR1	YDL060W	CIT3	P43635	486 aa		4.81	□□□□□ -1.64
TSR1	YDL060W	LAP2	Q10740	671 aa		4.81	□□□□□ -1.64
TSR1	YDL060W	SRP40	P32583	406 aa	Predicted RBP	4.8	□□□□□ -1.64
TSR1	YDL060W	TOM20	P35180	183 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 51.2 ms