RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	YBR287W	P38355	427 aa		3.11	□□□□□ -1.91
CLN3	YAL040C	ARI1	P53111	347 aa	Known RBP	3.11	□□□□□ -1.91
CLN3	YAL040C	PUF6	Q04373	656 aa	Known RBP	3.11	□□□□□ -1.91
CLN3	YAL040C	MRP10	O75012	95 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	RSC6	P25632	483 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	CPS1	P27614	576 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	PGM1	P33401	570 aa	Known RBP	3.1	□□□□□ -1.91
CLN3	YAL040C	OMA1	P36163	345 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	TYS1	P36421	394 aa	Known RBP	3.1	□□□□□ -1.91
CLN3	YAL040C	ISW1	P38144	1129 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	BSD2	P38356	321 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	ALD4	P46367	519 aa	Known RBP	3.1	□□□□□ -1.91
CLN3	YAL040C	ALO1	P54783	526 aa	Known RBP	3.1	□□□□□ -1.91
CLN3	YAL040C	GAS5	Q08193	484 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	RAV1	P47104	1357 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	ISC10	P32645	267 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	PUN1	Q06991	263 aa		3.1	□□□□□ -1.91
CLN3	YAL040C	PUP1	P25043	261 aa		3.09	□□□□□ -1.91
CLN3	YAL040C	GIP2	P40036	548 aa		3.09	□□□□□ -1.91
CLN3	YAL040C	TED1	P40533	473 aa		3.09	□□□□□ -1.91
CLN3	YAL040C	NOP7	P53261	605 aa	Known RBP	3.09	□□□□□ -1.91
CLN3	YAL040C	TY4B-P	A0A0B7P3V8	1104 aa		3.08	□□□□□ -1.92
CLN3	YAL040C	SRS2	P12954	1174 aa		3.08	□□□□□ -1.92
CLN3	YAL040C	KAE1	P36132	386 aa		3.08	□□□□□ -1.92
CLN3	YAL040C	PPT1	P53043	513 aa		3.08	□□□□□ -1.92
CLN3	YAL040C	SOK2	P53438	785 aa	Predicted RBP	3.08	□□□□□ -1.92
CLN3	YAL040C	TY4A-H	Q6Q5P6	413 aa		3.08	□□□□□ -1.92
CLN3	YAL040C	TY3B-I	Q7LHG5	1498 aa	Known RBP	3.08	□□□□□ -1.92
CLN3	YAL040C	GLT1	Q12680	2145 aa	Known RBP	3.08	□□□□□ -1.92
CLN3	YAL040C	SSA1	P10591	642 aa	Known RBP	3.07	□□□□□ -1.92
CLN3	YAL040C	GEF1	P37020	779 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	IPL1	P38991	367 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	FIR1	P40020	876 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	YIL165C	P40446	119 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	YJL181W	P46987	611 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	INP52	P50942	1183 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	DSE4	P53753	1117 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	MED7	Q08278	222 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	RTC1	Q08281	1341 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	MSN1	P22148	382 aa		3.07	□□□□□ -1.92
CLN3	YAL040C	SSA4	P22202	642 aa	Known RBP	3.07	□□□□□ -1.92
CLN3	YAL040C	TY1A-NL1	Q12391	440 aa	Known RBP	3.07	□□□□□ -1.92
CLN3	YAL040C	PAF1	P38351	445 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	YAP3	P38749	330 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	LEM3	P42838	414 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	GUP1	P53154	560 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	YLR122C	Q12312	125 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	RAD9	P14737	1309 aa		3.06	□□□□□ -1.92
CLN3	YAL040C	YLR419W	Q06698	1435 aa	Known RBP	3.06	□□□□□ -1.92
CLN3	YAL040C	BCK1	Q01389	1478 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	RRN6	P32786	894 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	TAF5	P38129	798 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	SAF1	P38352	637 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	POL5	P39985	1022 aa	Known RBP	3.05	□□□□□ -1.92
CLN3	YAL040C	IRC24	P40580	263 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	HXT8	P40886	569 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	TY1B-NL2	Q99337	1749 aa	Known RBP	3.05	□□□□□ -1.92
CLN3	YAL040C	MLP1	Q02455	1875 aa	Known RBP	3.05	□□□□□ -1.92
CLN3	YAL040C	YKR073C	P36153	106 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	AIM46	P38885	310 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	INP51	P40559	946 aa	Known RBP	3.05	□□□□□ -1.92
CLN3	YAL040C	CWC15	Q03772	175 aa	Known RBP	3.05	□□□□□ -1.92
CLN3	YAL040C	SOG2	Q08817	791 aa		3.05	□□□□□ -1.92
CLN3	YAL040C	KRE5	P22023	1365 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	HAP1	P0CE41	1502 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	CHS2	P14180	963 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	LIP5	P32875	414 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	TOS1	P38288	455 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	PAN5	P38787	379 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	EMG1	Q06287	252 aa	Known RBP	3.04	□□□□□ -1.92
CLN3	YAL040C	REC8	Q12188	680 aa		3.04	□□□□□ -1.92
CLN3	YAL040C	TY4B-H	P0C2J7	1802 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	TY4B-J	P47024	1803 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	TRP3	P00937	484 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	FUS1	P11710	512 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	AKR1	P39010	764 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	SUT1	P53032	299 aa	Known RBP	3.03	□□□□□ -1.92
CLN3	YAL040C	KIP3	P53086	805 aa	Known RBP	3.03	□□□□□ -1.92
CLN3	YAL040C	BIO5	P53744	561 aa	Known RBP	3.03	□□□□□ -1.92
CLN3	YAL040C	ALD3	P54114	506 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	YML083C	Q04526	418 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	PNP1	Q05788	311 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	SUB2	Q07478	446 aa	Known RBP	3.03	□□□□□ -1.92
CLN3	YAL040C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.03	□□□□□ -1.92	not detected
CLN3	YAL040C	SPT7	P35177	1332 aa		3.03	□□□□□ -1.92
CLN3	YAL040C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	3.02	□□□□□ -1.93	RIP-Chip
CLN3	YAL040C	SMC1	P32908	1225 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	MAE1	P36013	669 aa	Known RBP	3.02	□□□□□ -1.93
CLN3	YAL040C	NTA1	P40354	457 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	SPO71	Q03868	1245 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	YIL177C	P40434	1758 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	YJL225C	P40889	1758 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	TFA2	P36145	328 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	RAD55	P38953	406 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	RGD2	P43556	714 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	MHP1	P43638	1398 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	YGR130C	P53278	816 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	APC11	Q12157	165 aa		3.02	□□□□□ -1.93
CLN3	YAL040C	MSB1	P21339	1137 aa	Known RBP	3.01	□□□□□ -1.93
CLN3	YAL040C	NAM7	P30771	971 aa	Known RBP	3.01	□□□□□ -1.93

Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms