RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 MYOM3Q5VTT5 1437 aa15.38■□□□□ 0.05
SS18-221ENST00000582448 GPR37O15354 613 aa15.38■□□□□ 0.05
SS18-221ENST00000582448 IDI1Q13907 227 aa15.38■□□□□ 0.05
SS18-221ENST00000582448 UBR1Q8IWV7 1749 aa15.37■□□□□ 0.05
SS18-221ENST00000582448 MAST1Q9Y2H9 1570 aa15.37■□□□□ 0.05
SS18-221ENST00000582448 KCNA6P17658 529 aa15.37■□□□□ 0.05
SS18-221ENST00000582448 DUOX2Q9NRD8 1548 aa15.37■□□□□ 0.05
SS18-221ENST00000582448 TMEM94Q12767 1356 aa15.36■□□□□ 0.05
SS18-221ENST00000582448 TMEM2Q9UHN6 1383 aa15.36■□□□□ 0.05
SS18-221ENST00000582448 MROH1Q8NDA8 1641 aa15.36■□□□□ 0.05
SS18-221ENST00000582448 KANK1Q14678 1352 aa15.36■□□□□ 0.05
SS18-221ENST00000582448 EIF2AK4Q9P2K8 1649 aaKnown RBP15.35■□□□□ 0.05
SS18-221ENST00000582448 ARHGAP23Q9P227 1491 aa15.35■□□□□ 0.05
SS18-221ENST00000582448 FAM135BQ49AJ0 1406 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 SLIT1O75093 1534 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 FAM161AQ3B820 660 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 SAMD7Q7Z3H4 446 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 EYA1Q99502 592 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 ARHGAP31Q2M1Z3 1444 aa15.34■□□□□ 0.05
SS18-221ENST00000582448 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.33■□□□□ 0.04
SS18-221ENST00000582448 MAP3K1Q13233 1512 aa15.33■□□□□ 0.04
SS18-221ENST00000582448 FECHP22830 423 aa15.32■□□□□ 0.04
SS18-221ENST00000582448 LRCH3Q96II8 777 aa15.32■□□□□ 0.04
SS18-221ENST00000582448 ABCC5O15440 1437 aa15.32■□□□□ 0.04
SS18-221ENST00000582448 HIC1Q14526 733 aa15.31■□□□□ 0.04
SS18-221ENST00000582448 ADGRG1Q9Y653 693 aa15.31■□□□□ 0.04
SS18-221ENST00000582448 PIK3C2BO00750 1634 aa15.3■□□□□ 0.04
SS18-221ENST00000582448 ERBINQ96RT1 1412 aa15.3■□□□□ 0.04
SS18-221ENST00000582448 WBP1LQ9NX94 342 aa15.3■□□□□ 0.04
SS18-221ENST00000582448 GPIHBP1Q8IV16 184 aa15.29■□□□□ 0.04
SS18-221ENST00000582448 SLAIN2Q9P270 581 aa15.29■□□□□ 0.04
SS18-221ENST00000582448 XIRP1Q702N8 1843 aaKnown RBP15.29■□□□□ 0.04
SS18-221ENST00000582448 GNPATO15228 680 aa15.28■□□□□ 0.04
SS18-221ENST00000582448 PPP1R15AO75807 674 aaPredicted RBP15.28■□□□□ 0.04
SS18-221ENST00000582448 HPS5Q9UPZ3 1129 aa15.28■□□□□ 0.04
SS18-221ENST00000582448 EFCAB6Q5THR3 1501 aa15.27■□□□□ 0.04
SS18-221ENST00000582448 MSH6P52701 1360 aa15.27■□□□□ 0.04
SS18-221ENST00000582448 C14orf37Q86TY3 774 aa15.27■□□□□ 0.04
SS18-221ENST00000582448 PRDM15P57071 1507 aaPredicted RBP15.27■□□□□ 0.03
SS18-221ENST00000582448 DAPK1P53355 1430 aa15.26■□□□□ 0.03
SS18-221ENST00000582448 ANKRD30AQ9BXX3 1397 aa15.26■□□□□ 0.03
SS18-221ENST00000582448 SWT1Q5T5J6 900 aaKnown RBP15.25■□□□□ 0.03
SS18-221ENST00000582448 MEX3CQ5U5Q3 659 aaKnown RBP15.25■□□□□ 0.03
SS18-221ENST00000582448 SLC52A1Q9NWF4 448 aa15.25■□□□□ 0.03
SS18-221ENST00000582448 PLA2G2EQ9NZK7 142 aa15.25■□□□□ 0.03
SS18-221ENST00000582448 TSR3Q9UJK0 312 aaKnown RBP15.25■□□□□ 0.03
SS18-221ENST00000582448 ROBO1Q9Y6N7 1651 aa15.25■□□□□ 0.03
SS18-221ENST00000582448 NUTM2DQ5VT03 806 aaPredicted RBP15.24■□□□□ 0.03
SS18-221ENST00000582448 PTPN23Q9H3S7 1636 aa15.24■□□□□ 0.03
SS18-221ENST00000582448 HDGFP51858 240 aaKnown RBP15.23■□□□□ 0.03
SS18-221ENST00000582448 FAM50AQ14320 339 aaKnown RBP15.23■□□□□ 0.03
SS18-221ENST00000582448 RBM46Q8TBY0 533 aaKnown RBP15.23■□□□□ 0.03
SS18-221ENST00000582448 JCADQ9P266 1359 aa15.23■□□□□ 0.03
SS18-221ENST00000582448 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.22■□□□□ 0.03
SS18-221ENST00000582448 TET3O43151 1660 aa15.22■□□□□ 0.03
SS18-221ENST00000582448 TULP1O00294 542 aaPredicted RBP15.21■□□□□ 0.03
SS18-221ENST00000582448 TRIM52Q96A61 297 aa15.21■□□□□ 0.03
SS18-221ENST00000582448 NOS1P29475 1434 aa15.2■□□□□ 0.02
SS18-221ENST00000582448 RCCD1A6NED2 376 aa15.2■□□□□ 0.02
SS18-221ENST00000582448 FGD6Q6ZV73 1430 aa15.19■□□□□ 0.02
SS18-221ENST00000582448 PPP4CP60510 307 aa15.19■□□□□ 0.02
SS18-221ENST00000582448 PXYLP1Q8TE99 480 aa15.19■□□□□ 0.02
SS18-221ENST00000582448 LMTK2Q8IWU2 1503 aa15.18■□□□□ 0.02
SS18-221ENST00000582448 ATF3P18847 181 aa15.18■□□□□ 0.02
SS18-221ENST00000582448 DNAJB2P25686 324 aa15.18■□□□□ 0.02
SS18-221ENST00000582448 NKTRP30414 1462 aaKnown RBP15.18■□□□□ 0.02
SS18-221ENST00000582448 CROCC2H7BZ55 1655 aa15.18■□□□□ 0.02
SS18-221ENST00000582448 RIMS2Q9UQ26 1411 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 ADGRB3O60242 1522 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 PHLPP1O60346 1717 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 PLEKHG1Q9ULL1 1385 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 NUTM2BA6NNL0 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-221ENST00000582448 NUTM2EB1AL46 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-221ENST00000582448 RNF40O75150 1001 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 NUTM2AQ8IVF1 878 aaPredicted RBP15.17■□□□□ 0.02
SS18-221ENST00000582448 TBX22Q9Y458 520 aa15.17■□□□□ 0.02
SS18-221ENST00000582448 SLC24A1O60721 1099 aa15.16■□□□□ 0.02
SS18-221ENST00000582448 ZNF772Q68DY9 489 aaPredicted RBP15.16■□□□□ 0.02
SS18-221ENST00000582448 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.16■□□□□ 0.02
SS18-221ENST00000582448 TMEM134Q9H6X4 195 aa15.16■□□□□ 0.02
SS18-221ENST00000582448 LMOD2Q6P5Q4 547 aa15.15■□□□□ 0.02
SS18-221ENST00000582448 NYAP1Q6ZVC0 841 aa15.15■□□□□ 0.02
SS18-221ENST00000582448 METTL3Q86U44 580 aaKnown RBP15.15■□□□□ 0.02
SS18-221ENST00000582448 KDM5AP29375 1690 aaKnown RBP15.14■□□□□ 0.01
SS18-221ENST00000582448 OATP04181 439 aa15.14■□□□□ 0.01
SS18-221ENST00000582448 C19orf44Q9H6X5 657 aa15.14■□□□□ 0.01
SS18-221ENST00000582448 SETD1AO15047 1707 aaKnown RBP15.14■□□□□ 0.01
SS18-221ENST00000582448 SPATA31A6Q5VVP1 1343 aa15.14■□□□□ 0.01
SS18-221ENST00000582448 NWD1Q149M9 1564 aa15.13■□□□□ 0.01
SS18-221ENST00000582448 ANKRD50Q9ULJ7 1429 aa15.13■□□□□ 0.01
SS18-221ENST00000582448 ZFYVE9O95405 1425 aa15.12■□□□□ 0.01
SS18-221ENST00000582448 RXRBP28702 533 aa15.12■□□□□ 0.01
SS18-221ENST00000582448 SLF2Q8IX21 1173 aa15.12■□□□□ 0.01
SS18-221ENST00000582448 AMOTL2Q9Y2J4 779 aa15.12■□□□□ 0.01
SS18-221ENST00000582448 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.11■□□□□ 0.01
SS18-221ENST00000582448 PHOX2BQ99453 314 aa15.11■□□□□ 0.01
SS18-221ENST00000582448 LRP6O75581 1613 aa15.1■□□□□ 0.01
SS18-221ENST00000582448 HRCP23327 699 aa15.1■□□□□ 0.01
SS18-221ENST00000582448 RRBP1Q9P2E9 1410 aaKnown RBP15.09■□□□□ 0.01
SS18-221ENST00000582448 APLP1P51693 650 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 165.7 ms