RNA–Protein interactions for RNA: ENST00000565832.5

CHD9-217, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 2,169 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-217ENST00000565832 CPS1P31327 1500 aa8.28□□□□□ -1.08
CHD9-217ENST00000565832 NINLQ9Y2I6 1382 aa8.27□□□□□ -1.09
CHD9-217ENST00000565832 APAF1O14727 1248 aa8.27□□□□□ -1.09
CHD9-217ENST00000565832 KNDC1Q76NI1 1749 aa8.27□□□□□ -1.09
CHD9-217ENST00000565832 CPSF1Q10570 1443 aaKnown RBP8.27□□□□□ -1.09
CHD9-217ENST00000565832 RGPD8O14715 1765 aaPredicted RBP8.27□□□□□ -1.09
CHD9-217ENST00000565832 NEUROD2Q15784 382 aa8.26□□□□□ -1.09
CHD9-217ENST00000565832 ATP7BP35670 1465 aa8.26□□□□□ -1.09
CHD9-217ENST00000565832 RRS1Q15050 365 aaKnown RBP8.25□□□□□ -1.09
CHD9-217ENST00000565832 RRP7AQ9Y3A4 280 aaKnown RBP8.25□□□□□ -1.09
CHD9-217ENST00000565832 POLR3AO14802 1390 aaPredicted RBP8.25□□□□□ -1.09
CHD9-217ENST00000565832 BLMP54132 1417 aaPredicted RBP8.25□□□□□ -1.09
CHD9-217ENST00000565832 E2F4Q16254 413 aa8.25□□□□□ -1.09
CHD9-217ENST00000565832 POLKQ9UBT6 870 aa8.25□□□□□ -1.09
CHD9-217ENST00000565832 NUDCQ9Y266 331 aa8.25□□□□□ -1.09
CHD9-217ENST00000565832 EMILIN1Q9Y6C2 1016 aa8.25□□□□□ -1.09
CHD9-217ENST00000565832 PLEKHG3A1L390 1219 aa8.24□□□□□ -1.09
CHD9-217ENST00000565832 U2AF1L5P0DN76 240 aaPredicted RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 U2AF1Q01081 240 aaKnown RBP eCLIP8.24□□□□□ -1.09
CHD9-217ENST00000565832 NUTM2GQ5VZR2 741 aa8.24□□□□□ -1.09
CHD9-217ENST00000565832 NGDNQ8NEJ9 315 aaKnown RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 NPHP4O75161 1426 aaPredicted RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 USP32Q8NFA0 1604 aa8.24□□□□□ -1.09
CHD9-217ENST00000565832 ZNF142P52746 1687 aaPredicted RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 U2SURPO15042 1029 aaKnown RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 MKRN3Q13064 507 aaKnown RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 C14orf37Q86TY3 774 aa8.24□□□□□ -1.09
CHD9-217ENST00000565832 CHD2O14647 1828 aaKnown RBP8.24□□□□□ -1.09
CHD9-217ENST00000565832 ARHGEF1Q92888 912 aaKnown RBP8.23□□□□□ -1.09
CHD9-217ENST00000565832 LARP6Q9BRS8 491 aaKnown RBP8.23□□□□□ -1.09
CHD9-217ENST00000565832 TTC21BQ7Z4L5 1316 aa8.23□□□□□ -1.09
CHD9-217ENST00000565832 NSD2O96028 1365 aa8.23□□□□□ -1.09
CHD9-217ENST00000565832 PTCH1Q13635 1447 aa8.23□□□□□ -1.09
CHD9-217ENST00000565832 SMG6Q86US8 1419 aaKnown RBP8.23□□□□□ -1.09
CHD9-217ENST00000565832 NKTRP30414 1462 aaKnown RBP8.23□□□□□ -1.09
CHD9-217ENST00000565832 MAP2P11137 1827 aaKnown RBP8.23□□□□□ -1.09
CHD9-217ENST00000565832 COG3Q96JB2 828 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 CFAP53Q96M91 514 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 XRN1Q8IZH2 1706 aaKnown RBP8.22□□□□□ -1.09
CHD9-217ENST00000565832 EDC4Q6P2E9 1401 aaKnown RBP8.22□□□□□ -1.09
CHD9-217ENST00000565832 TTLL13PA6NNM8 815 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 NEFLP07196 543 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 LMOD2Q6P5Q4 547 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.22□□□□□ -1.091e-6■■■□□ 16.2
CHD9-217ENST00000565832 PROSER2Q86WR7 435 aaPredicted RBP8.22□□□□□ -1.09
CHD9-217ENST00000565832 TCP11L2Q8N4U5 519 aa8.22□□□□□ -1.09
CHD9-217ENST00000565832 SHPRHQ149N8 1683 aa8.21□□□□□ -1.09
CHD9-217ENST00000565832 DIP2AQ14689 1571 aa8.21□□□□□ -1.09
CHD9-217ENST00000565832 PIK3R4Q99570 1358 aa8.21□□□□□ -1.09
CHD9-217ENST00000565832 XPCQ01831 940 aaPredicted RBP8.21□□□□□ -1.09
CHD9-217ENST00000565832 ESCO1Q5FWF5 840 aa8.21□□□□□ -1.09
CHD9-217ENST00000565832 ORAI2Q96SN7 254 aa8.21□□□□□ -1.09
CHD9-217ENST00000565832 CDC42BPGQ6DT37 1551 aa8.21□□□□□ -1.1
CHD9-217ENST00000565832 ZNF521Q96K83 1311 aa8.21□□□□□ -1.1
CHD9-217ENST00000565832 KIF20BQ96Q89 1820 aa8.21□□□□□ -1.1
CHD9-217ENST00000565832 TIE1P35590 1138 aa8.21□□□□□ -1.1
CHD9-217ENST00000565832 ADGRB2O60241 1585 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 DIAPH1O60610 1272 aaKnown RBP8.2□□□□□ -1.1
CHD9-217ENST00000565832 HMOX1P09601 288 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 PDE4AP27815 886 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 RUNDC1Q96C34 613 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 CRISPLD2Q9H0B8 497 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 USP6P35125 1406 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 FOXO3O43524 673 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 PLIN1O60240 522 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 WWC1Q8IX03 1113 aa8.2□□□□□ -1.1
CHD9-217ENST00000565832 BMP2KQ9NSY1 1161 aaPredicted RBP8.2□□□□□ -1.1
CHD9-217ENST00000565832 AKAP12Q02952 1782 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 PDE3BQ13370 1112 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 DUSP27Q5VZP5 1158 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 PLEKHF1Q96S99 279 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 MON2Q7Z3U7 1717 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 INSRP06213 1382 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 PNPLA6Q8IY17 1366 aa8.19□□□□□ -1.1
CHD9-217ENST00000565832 ITSN1Q15811 1721 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 ANKRD26Q9UPS8 1709 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 SEMA3EO15041 775 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 GALR2O43603 387 aaPredicted RBP8.18□□□□□ -1.1
CHD9-217ENST00000565832 MFSD10Q14728 455 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 HSP90AB2PQ58FF8 381 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 DDX17Q92841 729 aaKnown RBP8.18□□□□□ -1.1
CHD9-217ENST00000565832 PHACTR3Q96KR7 559 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 RCAN3Q9UKA8 241 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 SSH2Q76I76 1423 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 NALCNQ8IZF0 1738 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 TOPAZ1Q8N9V7 1692 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 COL3A1P02461 1466 aaPredicted RBP8.18□□□□□ -1.1
CHD9-217ENST00000565832 SLFN5Q08AF3 891 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 ABTB2Q8N961 1025 aa8.18□□□□□ -1.1
CHD9-217ENST00000565832 DDX27Q96GQ7 796 aaKnown RBP8.18□□□□□ -1.1
CHD9-217ENST00000565832 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.18□□□□□ -1.14e-7■■■■■ 28.7
CHD9-217ENST00000565832 IL13P35225 146 aa8.17□□□□□ -1.1
CHD9-217ENST00000565832 PSME1Q06323 249 aa8.17□□□□□ -1.1
CHD9-217ENST00000565832 ILDR1Q86SU0 546 aaPredicted RBP8.17□□□□□ -1.1
CHD9-217ENST00000565832 TRIM35Q9UPQ4 493 aa8.17□□□□□ -1.1
CHD9-217ENST00000565832 PRKAR2BP31323 418 aa8.16□□□□□ -1.1
CHD9-217ENST00000565832 C19orf44Q9H6X5 657 aa8.16□□□□□ -1.1
CHD9-217ENST00000565832 RNF123Q5XPI4 1314 aa8.16□□□□□ -1.1
CHD9-217ENST00000565832 STRCP1A6NGW2 1772 aa8.16□□□□□ -1.1
CHD9-217ENST00000565832 FMN2Q9NZ56 1722 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms