RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 FCHSD2O94868 740 aa14.14□□□□□ -0.15
CUX1-218ENST00000560541 LRRC7Q96NW7 1537 aa14.13□□□□□ -0.15
CUX1-218ENST00000560541 ALDH1L2Q3SY69 923 aa14.13□□□□□ -0.15
CUX1-218ENST00000560541 ZRANB1Q9UGI0 708 aa14.12□□□□□ -0.15
CUX1-218ENST00000560541 VGLL3A8MV65 326 aa14.12□□□□□ -0.15
CUX1-218ENST00000560541 HSP90AB1P08238 724 aaKnown RBP14.12□□□□□ -0.15
CUX1-218ENST00000560541 ZNF692Q9BU19 519 aaPredicted RBP14.12□□□□□ -0.15
CUX1-218ENST00000560541 CFAP74Q9C0B2 1584 aa14.12□□□□□ -0.15
CUX1-218ENST00000560541 PNPLA6Q8IY17 1366 aa14.12□□□□□ -0.15
CUX1-218ENST00000560541 ZBTB7BO15156 539 aaPredicted RBP14.12□□□□□ -0.15
CUX1-218ENST00000560541 PPIP5K1Q6PFW1 1433 aa14.11□□□□□ -0.15
CUX1-218ENST00000560541 DIP2CQ9Y2E4 1556 aa14.11□□□□□ -0.15
CUX1-218ENST00000560541 VAMP4O75379 141 aa14.11□□□□□ -0.15
CUX1-218ENST00000560541 CD2BP2O95400 341 aaKnown RBP14.11□□□□□ -0.15
CUX1-218ENST00000560541 RBM42Q9BTD8 480 aaKnown RBP14.11□□□□□ -0.15
CUX1-218ENST00000560541 NFE2L2Q16236 605 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 MRPL50Q8N5N7 158 aaKnown RBP14.1□□□□□ -0.15
CUX1-218ENST00000560541 FAM83GA6ND36 823 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 RBM25P49756 843 aaKnown RBP14.1□□□□□ -0.15
CUX1-218ENST00000560541 MBIPQ9NS73 344 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 FSD2A1L4K1 749 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 DCTN1Q14203 1278 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 NME9Q86XW9 330 aa14.1□□□□□ -0.15
CUX1-218ENST00000560541 ZFYVE9O95405 1425 aa14.09□□□□□ -0.15
CUX1-218ENST00000560541 SIRT2Q8IXJ6 389 aa14.09□□□□□ -0.15
CUX1-218ENST00000560541 FAM135BQ49AJ0 1406 aa14.09□□□□□ -0.15
CUX1-218ENST00000560541 BMP2KLQ5H9B9 411 aa14.09□□□□□ -0.15
CUX1-218ENST00000560541 TNPO1Q92973 898 aaKnown RBP14.09□□□□□ -0.15
CUX1-218ENST00000560541 NCKAP5LQ9HCH0 1330 aa14.09□□□□□ -0.15
CUX1-218ENST00000560541 RRS1Q15050 365 aaKnown RBP14.08□□□□□ -0.15
CUX1-218ENST00000560541 TBC1D9Q6ZT07 1266 aa14.08□□□□□ -0.15
CUX1-218ENST00000560541 ARHGAP31Q2M1Z3 1444 aa14.08□□□□□ -0.16
CUX1-218ENST00000560541 MED14O60244 1454 aa14.08□□□□□ -0.16
CUX1-218ENST00000560541 OSCARQ8IYS5 282 aa14.08□□□□□ -0.16
CUX1-218ENST00000560541 TWISTNBQ3B726 338 aaPredicted RBP14.08□□□□□ -0.16
CUX1-218ENST00000560541 C8orf58Q8NAV2 365 aa14.08□□□□□ -0.16
CUX1-218ENST00000560541 KIF2CQ99661 725 aa14.08□□□□□ -0.16
CUX1-218ENST00000560541 ARHGEF40Q8TER5 1519 aa14.07□□□□□ -0.16
CUX1-218ENST00000560541 ANKRD26Q9UPS8 1709 aa14.07□□□□□ -0.16
CUX1-218ENST00000560541 TMEM131LA2VDJ0 1609 aa14.07□□□□□ -0.16
CUX1-218ENST00000560541 DDX11L8A8MPP1 907 aa14.07□□□□□ -0.16
CUX1-218ENST00000560541 FAM13BQ9NYF5 915 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 GNAI1P63096 354 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 DHX37Q8IY37 1157 aaKnown RBP14.06□□□□□ -0.16
CUX1-218ENST00000560541 GCC1Q96CN9 775 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 ALKQ9UM73 1620 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 DDIT3P35638 169 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 SNX21Q969T3 373 aa14.06□□□□□ -0.16
CUX1-218ENST00000560541 APBB1O00213 710 aa14.05□□□□□ -0.16
CUX1-218ENST00000560541 IL13P35225 146 aa14.05□□□□□ -0.16
CUX1-218ENST00000560541 NCOA3Q9Y6Q9 1424 aa14.05□□□□□ -0.16
CUX1-218ENST00000560541 NEO1Q92859 1461 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 KRT24Q2M2I5 525 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 IFT57Q9NWB7 429 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 PREX1Q8TCU6 1659 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 MAPK8IP2Q13387 824 aaPredicted RBP14.04□□□□□ -0.16
CUX1-218ENST00000560541 MLECQ14165 292 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 KIF20BQ96Q89 1820 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 GRPEL1Q9HAV7 217 aa14.04□□□□□ -0.16
CUX1-218ENST00000560541 IPO4Q8TEX9 1081 aaKnown RBP14.03□□□□□ -0.16
CUX1-218ENST00000560541 ZNF428Q96B54 188 aa14.03□□□□□ -0.16
CUX1-218ENST00000560541 MAP2P11137 1827 aaKnown RBP14.03□□□□□ -0.16
CUX1-218ENST00000560541 CLTCQ00610 1675 aaKnown RBP14.03□□□□□ -0.16
CUX1-218ENST00000560541 ABCC4O15439 1325 aa14.03□□□□□ -0.16
CUX1-218ENST00000560541 BRPF1P55201 1214 aaPredicted RBP14.03□□□□□ -0.16
CUX1-218ENST00000560541 C16orf71Q8IYS4 520 aaPredicted RBP14.03□□□□□ -0.16
CUX1-218ENST00000560541 PTCH1Q13635 1447 aa14.02□□□□□ -0.16
CUX1-218ENST00000560541 GSPT1P15170 499 aaKnown RBP14.02□□□□□ -0.16
CUX1-218ENST00000560541 MRE11P49959 708 aa14.02□□□□□ -0.16
CUX1-218ENST00000560541 ARHGAP45Q92619 1136 aa14.02□□□□□ -0.16
CUX1-218ENST00000560541 K7ELQ4 463 aaPredicted RBP14.02□□□□□ -0.17
CUX1-218ENST00000560541 TXNDC2Q86VQ3 553 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 GAS2L2Q8NHY3 880 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 ZNF853P0CG23 659 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 SSFA2P28290 1259 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 RAB3GAP1Q15042 981 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 GAS2L3Q86XJ1 694 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 GBP4Q96PP9 640 aa14.02□□□□□ -0.17
CUX1-218ENST00000560541 TPM2P07951 284 aa14.01□□□□□ -0.17
CUX1-218ENST00000560541 KIAA1211Q6ZU35 1233 aa14.01□□□□□ -0.17
CUX1-218ENST00000560541 AEBP1Q8IUX7 1158 aa14.01□□□□□ -0.17
CUX1-218ENST00000560541 CFAP44Q96MT7 982 aa14.01□□□□□ -0.17
CUX1-218ENST00000560541 OTUD7AQ8TE49 926 aaPredicted RBP14.01□□□□□ -0.17
CUX1-218ENST00000560541 CDC45O75419 566 aa14□□□□□ -0.17
CUX1-218ENST00000560541 ZNF830Q96NB3 372 aaPredicted RBP14□□□□□ -0.17
CUX1-218ENST00000560541 PIK3R4Q99570 1358 aa14□□□□□ -0.17
CUX1-218ENST00000560541 ERBB4Q15303 1308 aa14□□□□□ -0.17
CUX1-218ENST00000560541 ESPNB1AK53 854 aa14□□□□□ -0.17
CUX1-218ENST00000560541 COG3Q96JB2 828 aa14□□□□□ -0.17
CUX1-218ENST00000560541 CDC42BPGQ6DT37 1551 aa14□□□□□ -0.17
CUX1-218ENST00000560541 SOX12O15370 315 aa13.99□□□□□ -0.17
CUX1-218ENST00000560541 RICTORQ6R327 1708 aa13.99□□□□□ -0.17
CUX1-218ENST00000560541 WASLO00401 505 aaPredicted RBP13.99□□□□□ -0.17
CUX1-218ENST00000560541 PLEKHM2Q8IWE5 1019 aa13.99□□□□□ -0.17
CUX1-218ENST00000560541 API5Q9BZZ5 524 aaKnown RBP13.99□□□□□ -0.17
CUX1-218ENST00000560541 NUTM2FA1L443 756 aa13.99□□□□□ -0.17
CUX1-218ENST00000560541 SMARCA5O60264 1052 aaPredicted RBP13.99□□□□□ -0.17
CUX1-218ENST00000560541 CIZ1Q9ULV3 898 aaPredicted RBP13.99□□□□□ -0.17
CUX1-218ENST00000560541 RIMS2Q9UQ26 1411 aa13.98□□□□□ -0.17
CUX1-218ENST00000560541 NUDT16Q96DE0 195 aaKnown RBP13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms