RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 CLCN1P35523 988 aa14.31□□□□□ -0.12
GTF2A1-204ENST00000556268 CLTCQ00610 1675 aaKnown RBP14.3□□□□□ -0.12
GTF2A1-204ENST00000556268 CD46P15529 392 aa14.29□□□□□ -0.12
GTF2A1-204ENST00000556268 GCGRP47871 477 aa14.29□□□□□ -0.12
GTF2A1-204ENST00000556268 TMUB1Q9BVT8 246 aa14.29□□□□□ -0.12
GTF2A1-204ENST00000556268 A2ML1A8K2U0 1454 aa14.28□□□□□ -0.12
GTF2A1-204ENST00000556268 TIAM1Q13009 1591 aa14.28□□□□□ -0.12
GTF2A1-204ENST00000556268 AMHR2Q16671 573 aa14.28□□□□□ -0.12
GTF2A1-204ENST00000556268 REPIN1Q9BWE0 567 aaKnown RBP14.28□□□□□ -0.12
GTF2A1-204ENST00000556268 CEP170BQ9Y4F5 1589 aaPredicted RBP14.28□□□□□ -0.12
GTF2A1-204ENST00000556268 WASHC2CQ9Y4E1 1318 aa14.27□□□□□ -0.12
GTF2A1-204ENST00000556268 ZPR1O75312 459 aa14.27□□□□□ -0.13
GTF2A1-204ENST00000556268 FAM217BQ9NTX9 383 aaPredicted RBP14.27□□□□□ -0.13
GTF2A1-204ENST00000556268 ADGBQ8N7X0 1667 aa14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 FUT2Q10981 343 aa14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 TTLL12Q14166 644 aaPredicted RBP14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 PUS10Q3MIT2 529 aaKnown RBP14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 THEMISQ8N1K5 641 aaPredicted RBP14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 NKX2-3Q8TAU0 364 aa14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 AK7Q96M32 723 aa14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 SLC24A3Q9HC58 644 aa14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 ZNF142P52746 1687 aaPredicted RBP14.26□□□□□ -0.13
GTF2A1-204ENST00000556268 EHBP1L1Q8N3D4 1523 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 TNRQ92752 1358 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 TSPY4P0CV99 314 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 TSPY10P0CW01 314 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 ANKLE2Q86XL3 938 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 MYO3AQ8NEV4 1616 aa14.25□□□□□ -0.13
GTF2A1-204ENST00000556268 MIA2Q96PC5 1412 aa14.24□□□□□ -0.13
GTF2A1-204ENST00000556268 DNMT1P26358 1616 aaKnown RBP14.24□□□□□ -0.13
GTF2A1-204ENST00000556268 TRIM66O15016 1216 aa14.24□□□□□ -0.13
GTF2A1-204ENST00000556268 TLL1O43897 1013 aa14.24□□□□□ -0.13
GTF2A1-204ENST00000556268 PZPP20742 1482 aa14.23□□□□□ -0.13
GTF2A1-204ENST00000556268 NCOA2Q15596 1464 aa14.23□□□□□ -0.13
GTF2A1-204ENST00000556268 CCDC141Q6ZP82 1450 aa14.22□□□□□ -0.13
GTF2A1-204ENST00000556268 FAM135AQ9P2D6 1515 aa14.21□□□□□ -0.13
GTF2A1-204ENST00000556268 TOM1O60784 492 aa14.21□□□□□ -0.13
GTF2A1-204ENST00000556268 NR1I2O75469 434 aa14.21□□□□□ -0.13
GTF2A1-204ENST00000556268 SHANK2Q9UPX8 1470 aa14.2□□□□□ -0.14
GTF2A1-204ENST00000556268 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.2□□□□□ -0.14
GTF2A1-204ENST00000556268 CAMSAP2Q08AD1 1489 aa14.19□□□□□ -0.14
GTF2A1-204ENST00000556268 ATP6V1AP38606 617 aa14.19□□□□□ -0.14
GTF2A1-204ENST00000556268 MORN1Q5T089 497 aa14.19□□□□□ -0.14
GTF2A1-204ENST00000556268 GIGYF2Q6Y7W6 1299 aaKnown RBP14.19□□□□□ -0.14
GTF2A1-204ENST00000556268 PARP9Q8IXQ6 854 aa14.19□□□□□ -0.14
GTF2A1-204ENST00000556268 MED14O60244 1454 aa14.18□□□□□ -0.14
GTF2A1-204ENST00000556268 SPATA31D1Q6ZQQ2 1576 aa14.18□□□□□ -0.14
GTF2A1-204ENST00000556268 HSPA1LP34931 641 aa14.18□□□□□ -0.14
GTF2A1-204ENST00000556268 SCUBE3Q8IX30 993 aa14.18□□□□□ -0.14
GTF2A1-204ENST00000556268 NLRP1Q9C000 1473 aa14.18□□□□□ -0.14
GTF2A1-204ENST00000556268 KDM5DQ9BY66 1539 aa14.17□□□□□ -0.14
GTF2A1-204ENST00000556268 SSTR3P32745 418 aaPredicted RBP14.17□□□□□ -0.14
GTF2A1-204ENST00000556268 PPP1R18Q6NYC8 613 aa14.17□□□□□ -0.14
GTF2A1-204ENST00000556268 ARHGEF5Q12774 1597 aa14.17□□□□□ -0.14
GTF2A1-204ENST00000556268 NEURL4Q96JN8 1562 aa14.17□□□□□ -0.14
GTF2A1-204ENST00000556268 CPS1P31327 1500 aa14.16□□□□□ -0.14
GTF2A1-204ENST00000556268 KDM4AO75164 1064 aa14.16□□□□□ -0.14
GTF2A1-204ENST00000556268 KANK4Q5T7N3 995 aaPredicted RBP14.16□□□□□ -0.14
GTF2A1-204ENST00000556268 LOC105371045A0A1W2PR82 267 aa14.15□□□□□ -0.14
GTF2A1-204ENST00000556268 PIP4K2BP78356 416 aa14.15□□□□□ -0.14
GTF2A1-204ENST00000556268 LRRC9Q6ZRR7 1453 aa14.14□□□□□ -0.15
GTF2A1-204ENST00000556268 SLC27A5Q9Y2P5 690 aa14.14□□□□□ -0.15
GTF2A1-204ENST00000556268 NPHP4O75161 1426 aaPredicted RBP14.14□□□□□ -0.15
GTF2A1-204ENST00000556268 ADH1BP00325 375 aa14.13□□□□□ -0.15
GTF2A1-204ENST00000556268 PDE4DQ08499 809 aa14.13□□□□□ -0.15
GTF2A1-204ENST00000556268 GRIPAP1Q4V328 841 aa14.13□□□□□ -0.15
GTF2A1-204ENST00000556268 VWDEQ8N2E2 1590 aa14.13□□□□□ -0.15
GTF2A1-204ENST00000556268 UGGT1Q9NYU2 1555 aa14.13□□□□□ -0.15
GTF2A1-204ENST00000556268 RGS20O76081 388 aa14.12□□□□□ -0.15
GTF2A1-204ENST00000556268 USP46P62068 366 aa14.11□□□□□ -0.15
GTF2A1-204ENST00000556268 VPS8Q8N3P4 1428 aa14.11□□□□□ -0.15
GTF2A1-204ENST00000556268 HLA-CQ95604 372 aa14.11□□□□□ -0.15
GTF2A1-204ENST00000556268 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.11□□□□□ -0.15
GTF2A1-204ENST00000556268 ABCC3O15438 1527 aa14.1□□□□□ -0.15
GTF2A1-204ENST00000556268 HOXA2O43364 376 aa14.1□□□□□ -0.15
GTF2A1-204ENST00000556268 DEPDC5O75140 1603 aa14.1□□□□□ -0.15
GTF2A1-204ENST00000556268 MAP3K1Q13233 1512 aa14.1□□□□□ -0.15
GTF2A1-204ENST00000556268 MAST1Q9Y2H9 1570 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 MS4A1P11836 297 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 LTKP29376 864 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 GGCXP38435 758 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 NUTM1Q86Y26 1132 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 THAP11Q96EK4 314 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 SPSB2Q99619 263 aa14.09□□□□□ -0.15
GTF2A1-204ENST00000556268 RNF17Q9BXT8 1623 aaKnown RBP14.08□□□□□ -0.15
GTF2A1-204ENST00000556268 MYOM3Q5VTT5 1437 aa14.08□□□□□ -0.15
GTF2A1-204ENST00000556268 POLR1AO95602 1720 aaPredicted RBP14.08□□□□□ -0.16
GTF2A1-204ENST00000556268 S1PR4O95977 384 aa14.08□□□□□ -0.16
GTF2A1-204ENST00000556268 ALKQ9UM73 1620 aa14.08□□□□□ -0.16
GTF2A1-204ENST00000556268 ERVK-7P63135 1459 aa14.07□□□□□ -0.16
GTF2A1-204ENST00000556268 TXNDC2Q86VQ3 553 aa14.07□□□□□ -0.16
GTF2A1-204ENST00000556268 ARHGAP31Q2M1Z3 1444 aa14.07□□□□□ -0.16
GTF2A1-204ENST00000556268 LRRC7Q96NW7 1537 aa14.06□□□□□ -0.16
GTF2A1-204ENST00000556268 RNF19BQ6ZMZ0 732 aa14.06□□□□□ -0.16
GTF2A1-204ENST00000556268 BEGAINQ9BUH8 593 aa14.06□□□□□ -0.16
GTF2A1-204ENST00000556268 FMNL1O95466 1100 aaPredicted RBP14.05□□□□□ -0.16
GTF2A1-204ENST00000556268 GUCA2AQ02747 115 aa14.05□□□□□ -0.16
GTF2A1-204ENST00000556268 SLC6A16Q9GZN6 736 aa14.05□□□□□ -0.16
GTF2A1-204ENST00000556268 RNF223E7ERA6 249 aa14.04□□□□□ -0.16
GTF2A1-204ENST00000556268 SPIRE2Q8WWL2 714 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms